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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0253400 |
| Transcript ID | LotjaGi2g1v0253400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial; TAIR: AT3G28420.1 Putative membrane lipoprotein; Swiss-Prot: sp|Q9LY32|PMA7_ARATH ATPase 7, plasma membrane-type; TrEMBL-Plants: tr|G7KJZ7|G7KJZ7_MEDTR Transmembrane protein, putative; Found in the gene: LotjaGi2g1v0253400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:71938608..71939473) extracted from Lotus japonicus Gifu genome v1.2.
CACTACTTTACCCATCATTTTGGTTATACAGTCCCCCACATCACTAACAAGACCATCATTCTTGCTTGCACATGAGCCAC TTTCTCCTTGTGATTTAAATTCAGCTTCAACCTCAGCTCTAACCAACATCAAGATTCAACATGGAATTGAAAATGAGGGA ATGTGAGAGAGAAACCAAGGAGGATTGTATACACACTATTTTGTTCACAGCTGGTACATTTCTTCTAATGGTGTACCTAA AGAGCTTTCTAGTTGAGCAATGGCGTGCTTGGGTGTTCCTCATCCTCAATGTCATTTTATTAGCCATTCTATTCATGTCT ATGAGGCCGGTCTCTTGGGACCGAAGCGCGGAAAGCGAAAGCGATGTTGAAGAAGTAAAAGATGATGATAAAGAGAAGAG AAGGCCATGTGTGTGTTCTTCACAAGAAATTGAAGAAGGTAAAGAATGCCACAAAGATGTCCATGTTCTTCAGAGTGAGA CAGAAGAGGATGAGGAAGAAGAGGAGGAGGAGGAGGAGCAGGTTCCAATGTTGTCCAAAGAAGAATTGAATGCGAGAGTG GAAGCTTTCATAGCCATGTTTAGGCAGCATTTGATCTCGGATGTGAAACAAGCTGAAGATTTCAGGCTCAACAAACCAGC AAACTTGACTCCTAAGATTGAAGTTCCTTGCTGTTGAGGCTTAGGTTCTAAAGACAGCTACACATTTTTTTTCCTTTGTT TCTTCTAAATTGTTAAGGATGTCTACTACATTGTTTTGTTTGGATTGTTCCAATTTTCTGGCCCTTTGTTCACCTTATAT CTTGAAATTGAATCCTTTTAAATGACTACTGATAATCTCACCAGTGTTGAAAATGTTCATTCACAT
CDS sequence (LotjaGi2g1v0253400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAATTGAAAATGAGGGAATGTGAGAGAGAAACCAAGGAGGATTGTATACACACTATTTTGTTCACAGCTGGTACATT TCTTCTAATGGTGTACCTAAAGAGCTTTCTAGTTGAGCAATGGCGTGCTTGGGTGTTCCTCATCCTCAATGTCATTTTAT TAGCCATTCTATTCATGTCTATGAGGCCGGTCTCTTGGGACCGAAGCGCGGAAAGCGAAAGCGATGTTGAAGAAGTAAAA GATGATGATAAAGAGAAGAGAAGGCCATGTGTGTGTTCTTCACAAGAAATTGAAGAAGGTAAAGAATGCCACAAAGATGT CCATGTTCTTCAGAGTGAGACAGAAGAGGATGAGGAAGAAGAGGAGGAGGAGGAGGAGCAGGTTCCAATGTTGTCCAAAG AAGAATTGAATGCGAGAGTGGAAGCTTTCATAGCCATGTTTAGGCAGCATTTGATCTCGGATGTGAAACAAGCTGAAGAT TTCAGGCTCAACAAACCAGCAAACTTGACTCCTAAGATTGAAGTTCCTTGCTGTTGA
Protein sequence (LotjaGi2g1v0253400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MELKMRECERETKEDCIHTILFTAGTFLLMVYLKSFLVEQWRAWVFLILNVILLAILFMSMRPVSWDRSAESESDVEEVK DDDKEKRRPCVCSSQEIEEGKECHKDVHVLQSETEEDEEEEEEEEEQVPMLSKEELNARVEAFIAMFRQHLISDVKQAED FRLNKPANLTPKIEVPCC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | - | – | |
| PANTHER | 4 | 168 | 165 | 1.1E-54 | – | |
| PANTHER | 4 | 168 | 165 | 1.1E-54 | – | |
| TMHMM | 16 | 33 | 18 | - | – | |
| Phobius | 20 | 37 | 18 | - | – | |
| Phobius | 38 | 42 | 5 | - | – | |
| Phobius | 43 | 61 | 19 | - | – | |
| TMHMM | 43 | 60 | 18 | - | – | |
| Phobius | 62 | 178 | 117 | - | – | |
| MobiDBLite | 106 | 131 | 26 | - | – | |
| Coils | 107 | 127 | 21 | - | – | |
| MobiDBLite | 113 | 129 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0253400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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