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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0254000 |
Transcript ID | LotjaGi2g1v0254000.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | RNA-directed DNA polymerase (reverse transcriptase)-related family protein; TAIR: AT2G02520.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein; Swiss-Prot: sp|B6IQY9|KDPA_RHOCS Potassium-transporting ATPase potassium-binding subunit; TrEMBL-Plants: tr|A0A151SPY7|A0A151SPY7_CAJCA LINE-1 reverse transcriptase isogeny; Found in the gene: LotjaGi2g1v0254000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:71998357..71999546) extracted from Lotus japonicus Gifu genome v1.2.
AGATTAGAATCAAAGTATGATAGACTTTTCCAAGTGTCTGACCAAAAAACAAAGTGTATTGGGGACATAGGTGTTGGGGG GAAGTCGGGTGGGAATGGAGGTTGTTATGGAGGAGGTCTTTTTTTGAATGGGAAAAGAGGATCTACACTGATTTCATGCA GGAAATTGAAAGTGTTCATCTATTAAGAGGAACATGTGATAAATGGCATTGGACTCAAGAAGCATCAAAGGTATATACTG TCAAGTCAGCGTATGGTCTTATTTGGGCAGCAGGAAATTCATAAGCGGGAAATGAAGCTGCTGATCACAACAGATTTTTC AAGAAGATATGGTGCAGTTTGGTTCCTTCCAAGGTAGCAGCACTGGCTTGGAAAATTGGACTACAGAGATTGCCAACAAT GGATAATTTACTGAAAAGAAGGGTGACATTTTAGAACAATAATGGTGGTTTATGCTGGATGTGCAACGAGGAAGGGGAGA GTGGAGACCACGAATCACTTATTCTTCTCCTGCAGAGTTTCATATATGATCTGGGTGCAATGTAATAAATGGCTGGGTTT TGATAGCATTGTGCTTCCGCAGGATGGGATTCTCCAGCACGTGCAGTGGAGGCAAGGAAAAAGGATGGATGCGTTGTGGA AGGTTACTTGGTTTGCAACAATATGGAGTATTTGGCTCCTAAGGAACTCAATTATGTCCAGAGGAGGTCAGGTTGATCTG TTATCTGTTTTGGAACTGATTAAAATGCGCTCGTGGTGGTGGTTGAAAGCAAGAGCAAAAAATTTCAAAGCTACTTTCTA TGAGTGGGATGTGGATCCGGTTTATTGCTTGAGATTGTGCTCACAGGATGCTTGATCAAGATTGTACAGGTGCATGTTTT TTTATGCTTATTCACGTCAGCTTAGGGTGGAGCCCTTGGACACTTTCAAGTTTGATCTGCTATGGATTATGAAGACTCTA ATTTTCGAGGCTGTAATTGCTCACCTTCCATGGGCTATTTCTTACTCTCTTTTTTGGCTGATAGACTTATTGAGCTGAGT TGTATGATTACATTATGTCTAGGAGGGCTTTTGCTTTCATGAACCTTTAATTGTATCTTTTGTTGGGGCGAAGCACCCCT TGTGCTTCTTAATAAAAAAAAAATTGGCCTTTCAAAAAAAATAAACTATGAATGCACATGTGGGATAAAC
CDS sequence (LotjaGi2g1v0254000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGGTTTATGCTGGATGTGCAACGAGGAAGGGGAGAGTGGAGACCACGAATCACTTATTCTTCTCCTGCAGAGTTTC ATATATGATCTGGGTGCAATGTAATAAATGGCTGGGTTTTGATAGCATTGTGCTTCCGCAGGATGGGATTCTCCAGCACG TGCAGTGGAGGCAAGGAAAAAGGATGGATGCGTTGTGGAAGGTTACTTGGTTTGCAACAATATGGAGTATTTGGCTCCTA AGGAACTCAATTATGTCCAGAGGAGGTCAGGTTGATCTGTTATCTGTTTTGGAACTGATTAAAATGCGCTCGTGGTGGTG GTTGAAAGCAAGAGCAAAAAATTTCAAAGCTACTTTCTATGAGTGGGATGTGGATCCGGTTTATTGCTTGAGATTGTGCT CACAGGATGCTTGA
Protein sequence (LotjaGi2g1v0254000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVVYAGCATRKGRVETTNHLFFSCRVSYMIWVQCNKWLGFDSIVLPQDGILQHVQWRQGKRMDALWKVTWFATIWSIWLL RNSIMSRGGQVDLLSVLELIKMRSWWWLKARAKNFKATFYEWDVDPVYCLRLCSQDA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 83 | 83 | 5.2E-12 | – | |
Phobius | 1 | 63 | 63 | - | – | |
PANTHER | 1 | 83 | 83 | 5.2E-12 | – | |
Phobius | 64 | 80 | 17 | - | – | |
Phobius | 81 | 137 | 57 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0254000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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