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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0256400 |
| Transcript ID | LotjaGi2g1v0256400.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Hypersensitive-induced response protein 1; TAIR: AT5G62740.1 SPFH/Band 7/PHB domain-containing membrane-associated protein family; Swiss-Prot: sp|Q9FM19|HIR1_ARATH Hypersensitive-induced response protein 1; TrEMBL-Plants: tr|I3SYV8|I3SYV8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0256400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:72275316..72281681) extracted from Lotus japonicus Gifu genome v1.2.
AAATAAAAAAAAAAAAACGAATAACAAATATGAAAATGCATTATAAAAACCCTAATTCTGTAATAAAGAAATCCAATCTT TGCGTCTCTCTCTCACTGTGCATCGAAAGGTGAGATTTCTCTTCTTCTCTGCTCGCTCGCTGAATCAACCACTTTCTTGT CCCTCTGTATCTTCTTCACTGTGCGTGTCACGTTCTTCAATTCAATTCTGTGTTTTCTGTTCAATGATTTCTGTTCCTTT TTGTGTTTTTGCTTTATTGAATCACCGCTAACTTGCTTCTTAAGAAAATTGTCTTTAGTTTGAACCTTTTTTTGCTTTGA TTTGGTTAATTTTCTGGGTTTCTGGATCCGGATATGTGATGTGATGGGCAATTCATGTTTAGCTGAGGTTTTTGAGTTCA TGGGTTTCTTATAATGGGTGCTTTTTTTTTCAGGAAAACAGAATTTGAACAATTGTGTGTTAGCTTTGTATACTGTTTGC TGTTGGGTGTGTGAATTTTCAATCCTAATGTGTATTTATGAAAATTCAATGTTTAGGGCAAGTAATTGAATTTTGTAACT AGTCAATTTTTTATTTCATGCATATTGTTCAGTTTTATTGCTCCTTCTGTTACTCTCTTTATAGTCAGAGATGCTTGAAA ATATGAACTTGGTGTTGCCTGAATTCTCATAGTCATACCCTTTCTTCTTAGACTTTTTACTGTTTCATTGAAATATTTGT GGTGCATTTTTTACATTGAGGGTTAATCATCCAAACTTTTTACTGTTAACTAATCCCCTGATAGTCTCACTGTTTCATTA TTCAGTATGCATATATCTTTCAATGGTTACCACCTACCAGTATTTGCAAACTATTGGCAAAATGTGAATTTTCATTATGT GTAATCTAATTCATGAGTAGTGCTACTCTACTGCAGAATTGAAAGATGGGTCAAGCATTGGGATGTGTTCAGGTGGATCA GTCAAATGTGGCTATCAAGGAGCATTTTGGAAAGTTTTCTGAGATTCTGGAACCTGGATGTCATTGCTTGCCTTGGTGTC TTGGGTACCAGATAGCTGGGGGACTTTCACTACGTGTGCAGCAACTTGATGTTCGCTGTGAGACAAAAACCAAGGTTTTT GCTGCTTCCTTTCCTCCACCTACCTTGTTTCATGGTGCTAGTTTTTTAGTTTCCCTGCCCCTGATCTGAAGTAATAATTT GTGTAATGAAAAAGATTACTTGGTTTTTTCTGTTAGTATGATTTCTAATGACTTTAATTAAAATTGTGAAAATGTTCTGT GTACTAAATATTAGCCAATTAATACATGGTTGATGGTGATTATTTTCCAACAAGGTGATAACAACTTTTTCTTAGTCAAT TTCCTTCTGTACCTCCAAGAAATCATTTTTACCTCAGGATTTCGAAAAGCTATTGTAAAATCTGTTCATTCTAATTATGG GTGAATATGCACCATGTGATTTATTATGATTGTTGTTTGAGTTTACTGTCATTAACAGGCCAGGATGATGATTTTGTCAC TGTGGTTGCATCTGTGCAATACTATGCTGTGGCTGAGAAAGCATCTGATGCTTTTTATATGATTTGTTGTTTGAGTTTAA CTGCTATTAACTTGTCAGGATAATGTTTTTGTCACTGTGGTTGCGTCTGTGCAATACCGAGCTGTGGCTGACAAAGCATC TGATGCCTTCTATAGGCTCACCAACACAAGGGAACAGATCCAATCATATGTTTTTGATGGTATGTAGAGTGAATTTTCTG CTTCGTTGTACTATTGAAATGCATACCTTTAATTGTCACATAAATTTTCTTGATTCCTTTGTAGTTATTCATCATTTGTG AAGCATTTTATTTTGCAAGTGTGTTATAATGTATTTGATAAATGTGTGGGGTTGATTCTTTATTTAACTGCTGGTATTTT CCAAATCTTCAGTTATCAGGGCCAGTGTGCCAAAGTTGGAGTTGGATTCTGTCTTTGAGCAGAAGAATGACATTGCCAAG TCTGTTGAAGAGGAGCTGGAGAAGGTGTTTATTCTTTTTTACAATCACTTTTGTTTCTCTTTTCCTTATTTATATAAAAT ATTACCTCAGTAGATCTTTGAAGGTTGTAATCAATTATCGACAATGTATCAGGCTATGTCAACCTACGGATATGAGATAG TCCAGACCCTCATTGTTGATATCGAGCCTGATGTTAATGTCAAGAGAGCCATGAACGAGATCAACGCAGGTAATATATTC TAGTTCCTATGGTGTGGACATTTGCTTTTGTTCATTAATATATTTATGTTGCAACTTGCTCTTTCAAATTGCTGTAAATT TGCATAAAGTATGCTTCAGATGTTGTGCCTCACTGTCAAGTTTTCTTATTTTGTGGTGAATTGTTTGCAATTTGCTCTTT CAAATTACCATTAGGTTTGCATGAAGTTAATTTTTGAAATGTGCATTTTTTAAAAAATCATAGTACTGTCTATGTTTGTG CTATTGCACTGAAGACAAACTTGTCTTGTAGAAAGTCTGTTAGGCCTTTTAGTATATTTTGTTTGATGATTGCGATTGTG ACCATACCCTTATCCATTTTGCTATGTTATCAACAGCTGCCAGAATGAGGTTAGCTGCAAATGAGAAGGCTGAAGCTGAA AAGATTCTGCAGATTAAGAAAGCTGAGGGAGAGGCAGAGTCCAAGTATCTGTCAGGACTCGGTATTGCTCGCCAGCGCCA GGCCATTGTGGATGGGCTGAGGGACAGTGTGCTTGCATTTTCTGAGAATGTGCCTGGGACATCAGCTAAAGATGTCATGG ACATGGTGCTGGTGACTCAATACTTTGACACCATGAAGGAGATTGGGGCATCTTCAAAGTCCTCATCTGTGTTCATTCCA CATGGCCCTGGTGCAGTTAGGGACATTGCTGTGCAGATCCGCGATGGTCTTCTTCAGGGCAATGCTGCACACATTTGAGA TGAAGGTTTTCTGGAATGTAGATAGCATATAGTATGAAACTATGAATGCTTGTCAGGTTTTCTTAAATTCTGGTGAATTG TCGATAATAGATAACAGAAGTACCTCTGCTGTTTAAATGATTGCATCTTTGCTCCTATTATACTGTGCAGCTGAACGCCT AGTTCTATATCATGAGTGCTATAGTTGCTATTTTGAACGTTCCTTTGGATTAGTCATTGTTTTTTGGACAAAGTTATTAG TCATATTATGAAAGGGTTGTTATTAATATCCCCAAAATACACTGCGTTATATGAAAATGTATTAATTCTTTGTTTTCCAT ATTATTTATTCAGTGCATACAGATTCTCCTCTCTTGGCTTCTTGAAAGAATTTTTTTAAACACGGCATTTAGAGAATGAA ATATGAAAACGATCCAAGTATTAGTATTTTATGAGTAATAATTCTTTCATCCAAATTCTTAAAGTTTTGTTTAAATTATT ACACACTCTTCCTTTTAGAAGAAGCTTAATTAATACTCTCTTGCCCTCTTATATTAAAACTTACACTCTCCCACCCGTAA ATGAAGCTTAAATTATAGTTTTCTCCTCTCTTATTTCAAAATTTACGCTCCCCTCCCGTAAGAGATAATAAATATGCATA TCAATCTTGAAGTTAATTGGCATAATTTGACACCTCCCATAAAATCGTCCTGTACTTTAGCCCCATGATTTTCCCTGTGA AGATTCTCCACATTCCACATTTGTTGGAGGACATTCCTTGTTCGACACAACCATTTTGTTGGAGGATATCCTGGCTCAAA TGATTGATATTTTTTATGAAAAGAAGGTGAATGATAGTCCTATAGAGCATGTCGAGCACAAAGCTCTCCATTGCTTTGGA TGCTGGAGCAGCTTTCAAAAGTGTGATGCTCTATTTTTTCATCAAATCACCTACACCAAGTGCTGATGATTACTGCCCTT TGGCCGAATGCCCCACTGGTCGTGGTGTCATCCGATCACCTACACCAAGTGTTGATGATTACTGCCCTTTGGCCGAATGC CCCACTGGTCGTGGTGTAGTTGTTAAGGGATGTCCTAGACTCTAATTTTCATGTATGAAGCATTCAAGATAGGTTTTCTG GGGTTGATATCATGTGTGACCCTTGCTTTTCTAAACGAGTTTTTCAACTATACAAATAACTCTCTACGTGTTTCTTTAGA CCCAACCCAACACTAGTATTTCTTTCATGTTTGGAAAGCTGGTTGCAAGACTTCCCATCAAGATATTCACAATCCCTTTC ACCAAATGCACTTTCAGTATGAACCTCTTGGGCCTTTCAATTCAAAAGAGCATGCTCTCATCTCAAACTTTGCAAGTTGT CGGTCTAGTGGAGTTTATGCGATCAATGTGTGACCCTTTCACTATGAACCCTAGGTCATTCAATATGTCGAGCTCATAGC TTCAGTAACTGATGATCCTAATGAGGGATCATTCACATTGAGGACAGGTTTTCTCGGGTTGTTATCATCTATGACCCTTG CTTTTCTGAACAAGTTTTTCAGCAACAAATAAACCTCTCTACGTGTTTCTTCAGACTCAACTCTAGTTGTTTCCTTCCTA TTTGGAAAGCTAGTGGCTGCAAGACTTCTCATCAAAATGTTCACAGTCCCTTTCATCAAATGGACTTTCACTTTGAACCC TGGGCAATTTAATAACATCACATCAAACTAAGAATGTCTAATTTCGATCCTCTGTACTAGTAACAGATATTTATTATATA GAGTTAATTTTTTTTTGGCAAATGTGAAGTTGTAAATCATAAATGAATATCATTTCATTCATTAATGAATAACAATTCAT TCATATTTATATTTCTCTTCCATCTTCCATATCATCTCCACACATTTCTCTTTCTATCTTTCTTTTAATATTCCTATCAG ATCATCTATTATTTCACTCATTTCTTCTTATCTCACAAGGTGGAGATGAATTTAAGTTCTCAACCAAATTGTTCATCATA ACTAGAGGCAGACATACACTTTGTATATAGGGAATAGGTTAAAACAGATGAATTATTTTGACTGAAGGGGAAATGGATTA CTCGGTTTTTGAATCTTTACTTTGCTGTGTAAAGCTTCTAACACAATTAGTTCAAAAAACTGTTAACTGGAGTAGTTATT TATTGTGATGCAGCCTTCATGAATTGATGACTACATATTTATCTCCATGCCTACAAAAAGATTCATATACAAGAGCGCAG CTCTCGAAGTGTTTGCCTAGCTTAGTATACAAGTGTATTAGCAGACAGAACAATCCATTTTCTGACCTCCACTTGCTAAA TTCAAAAGGATCCCAGAGATTTTTACTTACAGGAGTAGGGAGAAGGCATTTCAAAAGCAACATTCAACATTTTTCAAGTT TGAGGGCATTTTGGTACAAAGAGACAAGCCAACAGAATTAAAAGCAACATTCAACAGCCTTCATACAAATTACAGATCCT ACAAATAGTGAAAGTCATGCAATTTGTAAAGAATAATGAAGCATTTTTTGGCTGGATACTGCTTATAACAATTGAAATCA AAAGAAAATGAAAGCAACAAATATAAAGGTCATCATCACATGCAAAGAAATAAAAAAGGAGAATACTGCAGACACCAAAC AAATAGATTTCCAAAAGGCTGTGGGGATTCACAGAGTAACATTTGGTTTATAGAAATAATCCATTGCTTATTTATACAAC GTTGAATTGCTCAAATGCAACCAAAACATCATGAACACTTATGTCCAATAGAACCAGAACCAACCGCAAGAAAATTCAGT CTGAGAGACAACTATGTGCTTTGCTAATGCCTACCCCAATGCTCTTGCCATAATGGCTCAAAATTCCGACCCTCAAGGAT TGAGAGCCAATTACCTAACCCAATCTTCGTACTTTTCTCAATGGCCTTAGTGTCAACCTCACCAGAAATGGTGAAGAATG ACTTGGGAGTTGGGACGCCACTCATGCTGGATATATATGGTGGCAATGGTGCTGGTGACTCAATACTTTGACACCATGCA TGAAGGAGATTGGGGCATCTTCAAAGTCCTCATCTGTGTTCATTCCACATGGCCCTGGTGCAGTTAGGGACATTGTTGTG GAGATCCGGGATGGTCTTCTTCAGGGCAGTGCTGCACACATTTGAGATGAAGGTTTTCTGGAATGTAGATAGCATATATA GTATGAATGCTTGTCTGTTTTTCATATTTTCTGGTGAATTGTCGATAATAGATCATGGAAGTACTTGTACTGTTTAAATG ATTGCGTCTATACTCCTCTAATATTGTGTAGCTGAACGTTCTAGTTCTATATCCTGAGTGCTATAGATGTTATTTTGACA AAGTTAGTAGTCATATTATGAAAGGATTATTATGAATTTCTCCAAA
CDS sequence (LotjaGi2g1v0256400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTCAAGCATTGGGATGTGTTCAGGTGGATCAGTCAAATGTGGCTATCAAGGAGCATTTTGGAAAGTTTTCTGAGAT TCTGGAACCTGGATGTCATTGCTTGCCTTGGTGTCTTGGGTACCAGATAGCTGGGGGACTTTCACTACGTGTGCAGCAAC TTGATGTTCGCTGTGAGACAAAAACCAAGGATAATGTTTTTGTCACTGTGGTTGCGTCTGTGCAATACCGAGCTGTGGCT GACAAAGCATCTGATGCCTTCTATAGGCTCACCAACACAAGGGAACAGATCCAATCATATGTTTTTGATGTTATCAGGGC CAGTGTGCCAAAGTTGGAGTTGGATTCTGTCTTTGAGCAGAAGAATGACATTGCCAAGTCTGTTGAAGAGGAGCTGGAGA AGGCTATGTCAACCTACGGATATGAGATAGTCCAGACCCTCATTGTTGATATCGAGCCTGATGTTAATGTCAAGAGAGCC ATGAACGAGATCAACGCAGCTGCCAGAATGAGGTTAGCTGCAAATGAGAAGGCTGAAGCTGAAAAGATTCTGCAGATTAA GAAAGCTGAGGGAGAGGCAGAGTCCAAGTATCTGTCAGGACTCGGTATTGCTCGCCAGCGCCAGGCCATTGTGGATGGGC TGAGGGACAGTGTGCTTGCATTTTCTGAGAATGTGCCTGGGACATCAGCTAAAGATGTCATGGACATGGTGCTGGTGACT CAATACTTTGACACCATGAAGGAGATTGGGGCATCTTCAAAGTCCTCATCTGTGTTCATTCCACATGGCCCTGGTGCAGT TAGGGACATTGCTGTGCAGATCCGCGATGGTCTTCTTCAGGGCAATGCTGCACACATTTGA
Protein sequence (LotjaGi2g1v0256400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGQALGCVQVDQSNVAIKEHFGKFSEILEPGCHCLPWCLGYQIAGGLSLRVQQLDVRCETKTKDNVFVTVVASVQYRAVA DKASDAFYRLTNTREQIQSYVFDVIRASVPKLELDSVFEQKNDIAKSVEEELEKAMSTYGYEIVQTLIVDIEPDVNVKRA MNEINAAARMRLAANEKAEAEKILQIKKAEGEAESKYLSGLGIARQRQAIVDGLRDSVLAFSENVPGTSAKDVMDMVLVT QYFDTMKEIGASSKSSSVFIPHGPGAVRDIAVQIRDGLLQGNAAHI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 282 | 282 | 1.2E-184 | – | |
| PANTHER | 1 | 282 | 282 | 1.2E-184 | – | |
| SMART | 5 | 165 | 161 | 4.4E-38 | ||
| Pfam | 9 | 182 | 174 | 1.1E-26 | ||
| CDD | 10 | 278 | 269 | 3.8624E-167 | – | |
| Gene3D | 44 | 167 | 124 | 2.2E-16 | – | |
| SUPERFAMILY | 47 | 171 | 125 | 8.11E-25 | ||
| Coils | 118 | 138 | 21 | - | – | |
| Coils | 170 | 190 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0256400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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