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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0256900 |
| Transcript ID | LotjaGi2g1v0256900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | AP2-like ethylene-responsive transcription factor; TAIR: AT3G54320.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|Q6X5Y6|WRI1_ARATH Ethylene-responsive transcription factor WRI1; TrEMBL-Plants: tr|K7LFS2|K7LFS2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0256900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:72305606..72311973) extracted from Lotus japonicus Gifu genome v1.2.
AACACATAAAAATTAATGGTTAGATGTCAACTGGATATGGTTAAGTTTTTTTTTTACAATTGAAAAGATTGTATGTATCT TTCTATATTTTCAAATGGCAGCTATATCTTAATTTTTACAACCAATAATATGTTCAAAACTCTGGGATTTCGGCTGGCAA AAAGGACAACACAAGTTTGCCCTCAAATTCCCCCTGTAATCATCGTCCCCTTGTTTTTAACTTCAATCATTTATGCAGTA AAAACAAAAGCATAACAAGGCCAAAACAAGCATGCATACTTTAAGAATATATACCTAGACACTCAACAAGTCAAGGACAC TTGTTGAGAAGGAAAAGAAGACACAGAAAATCACAATTAAAGAATGGAAATAGTGATAAAGCATGAAGAGAACAAGAGGA AGAGCTGGATGTCCATGGCGGAAGAAGTGTTTAAAGTAGCTCCGGGTGCCAAGAGACGGCGAAGAGAGCCTCCTCCAGCT GATAACAAAGGTCAAAAGCAACAGTTGCTGCCACAGCAACAAGTTGAACAAAATTCTACTACCAACACTACTACAAAGAG AAGTTCAAGATTTAGGGGTGTCAGCAGGTTATAGAGAAGGGGTTTCTTACTGCTTTAGTTTCAAATAGATGTTAAGCATC AACTTCTGTTATTCTTTTTCATTTGCTAATCATAGTTGGAACTTGAACAGACATAGATGGACGGGTAGATATGAAGCACA CTTATGGGACAAGCTCTCTTGGAACATGACCCAAAAGAAGAAAGGGAAGCAAGGTAGGATCACTTTCCTTAGGCTTTGGC ATCTGCTGTTTTGTTGCTTACTTTTTCTCATTCATTTGTGGATCCTGTCTTCTCTTGGAAAGCATTTGTTTATCCTTTCT AACATAGAAATGTGTTTTCATGTTCAAACCTTTGTCTTTGGAACATGGATTGGAATTGTCACTTGACACCAACAGTTTAC CTTGGTGAGTATCTTGGTCATCAAGCCTAGGTTTTTCTTCGATCTCTGTGATAATCACTAATACAAAGATAAACTATCAT TCAACTATCACAGGGGCTTATGATGAAGAAGAATCAGCAGCCAGAGCATATGATCTAGCTGCACTGAAGTACTGGGGAAC ATCAACTTTCACCAATTTTCCTGTATGATGATAGTTTTTATCTAAGAAATAATGGAATGCATCTTTACTTAAAGCTAAAA TGCAGATGAATCAACTAATGCTACTTGTACTTCCAACAGATTTCAGATTATGAGAAACAGATAGAGATAATGCAAACTAT GACAAAAGAGGAGTACTTGGCTACTCTAAGGAGGTAAGTAAGACTATTGATCTTGTCTTTGGTACTGATGAGAAGTACCT GAAAACTGTTTTCCTGATATTAGTGTCAGCAATACATAGGGCAGTCATCCATATGAAAGACTTAGGAACATTATCATGAC CACTTCACCCATACATGACTTTTTTTGTCCCATTTCTTGCAGAAAGAGTAGTGGCTTTTCAAGAGGTGCATCAAAGTATA GGGGTGTTGCAAGGTGATACTCCTAATGATGGTTGAATACTATATGTATTCTGAATCATTGTTGATGAAGATGAATTACT AAAAAATGGTTAATATATTGCAGGCACCATCACAATGGTAGATGGGAAGCAAGGATTGGGAGGGTTTTTGGAAACAAATA TCTCTACCTTGGCACCTATAGTAAGTTAAATCTCCATAGCCTATCATGGGACTGCAAAACATGCACAAACACACAAACAT ACCTATGCTTCTTTCATTCATTAACCTCTCAAGACATCTTGTTAACTAAATTTATGGATCTTCCTAAACATAGGGACCCA AGAGGAAGCTGCTCGTGCTTATGACATAGCGGCCATCGAGTGCAGAGGGATCAGTGCTGTGACCAATTTCGACTTGAGTA CTTACATAAGATGGTTAAATCTTTCAGCAGGAAATATCTCAGAAACAAAACTAGAACCAACAGTAGTACAGGAGTCTCAG ACAGTGGCAAACACAGAAGGGTACAAATCCTTGGCCATTAACAGCTCTACTTACAATTCGGAGTATCTGAATTCCCCTCA AAAGCATGAAGTGTTCGAGAACAAAACATACCAATTCTCCAGCCCTAACTCATCTTCTCCAACTGCACTTGGGCTCCTTC TTCGCTCTACAGTATTCAGAGAATTGGTTGAAAAGAATTTGAACATATCTGAGGATGAAACTGATGGGGAAGACACAAAA GATCAACAGCCGCATGCAGCTAGTGATGATGAGTTGGCTGGGATCTTTCATGATGGAACTGGTCATATATCACCTTTCTG TAATCCCAACAGAGACAACTTAGAAATGCAAGGAGACATGCAGTCCAGTTTATTAAAGAGAAGTGTCAGCCCTCAAAGTC AAGGTGCAAAAGTGCTAGATAATCCACACTACCATTGCTGAAGGAAACATGAAGATAACTAATTGTGCATTCCTATGAAA CACTGAATTTCTTGGGTGCGTAGATCTGAATTACTTCCAGTTTTGGACATCAAAATAATGATCCACTTAGTCGTTAAATT TATATGCTTGACTACCCCGGAATATGTATATGGAAGCCATAGTTAACAGATCTAGCCTGAGATGAAAGCACCTATAGCTT ATAAAAATCCCTTGGCTATGAGCATGTTTGGTAATAGATTATAGCTAGATTAAAGTTTATTTGACTAGATTATAAGTTTG TTTAACTAAAAATAAAGCTGTTTGGCAAAATAGAGTATATCACCAATTCACCACTAGCTTGTAATCTTTCAGAAAATTGA ACTTATAGCTTATCACTTTAATTCTCATATTTATCCTTATTATTTTAATTAACTTTCTCAATAACCTCTCCTTATTCAGA AAAGCATACTACGAGATACTTTTGTTTCATGTAACATTATAAGAAATCAGAAGGGAAACTCTGATTCCTGGAAAGTTACC GGTTCAAAGCAATTTTCTTAATTTCTAAGCCAGTTCCCACAGGAAGTGTAATAAGGAAAACTAGTACAAAATGTTATTTT TCAACCCAAAATTAAAAGCAGTTTTTTTTGTAATGAATGATCGTGTACTACTCAATGTTCCAATGATGAAAAGAAACAAG ACAAAATGAAATAAAATAAGATCCACTTTTCTAATAAAATCCAGGGACAGGCTGCTATGCAGGGAAGCCAGGTTAAAATG TTATCAGATACAATGAAAAATGAAGATTATTCACACAGGAAAGGAATTCACAAGAATGCAACTTTGTGTATGTCTTTACC TTTAGCCATAAACCTACTACATCTTTCAACTTCTCTAGACTAAAGAGGTCCAAATGCCTGCGGCTGCAAGCCTTTATCAA GAAAATAATGAAGCATTAATTTGGACCACTCATCAATTCTGTATAGCAGAACAAAATTTAATCATTTAATTTAATTCAAA CATCAAGCACCAAGCTCGGAGAGGTGAAACTCAGGTAAATTGTTTATGCGACCATTGGTATAACATACTTTCCAAGCAAC TGCAAACCACACTTTTACTTTACTGAAATACCGAAGGTACTATCCACTTCTATTTACTTGATGCAAAATTAATGAACCAT TTGAAAATTGAAAGCACAAATAATGCAGGCCAAGGGGGTTTAATTAATAATTAAAGGTTGAATTGCTGCTTTAGCAACTT CAGCATAGTACTGTTCATAACAGTGTGACACACAGATATTTAACACTACCCAAAGCATGAACTCACTCAGGAATAAGAGA CCATTGGTTTTCAAGTTGATCCAGCTTTACTAAGTGGAGAGATCATAGGCAAGACAATTATCATCAGCTAATGGAATTTG TCATCTTGGATCAGGATTGAACTATCTTCAATTATGTTCAGACTTAATACTAGGATATCTGATATACTTGTGTTCTGCTA TTACTCATGCATATAGTAGTAATCAACTAATGTTATAATTCTAAAAAGGTAACATAAACCTGAGAAAACAGCCTAATCAC AGAGAATGAACAAGTAGGAAAACCGCAGGTCCAAGTGGTGTGTTAACAATTCAAGAAATCTCAATACCAAGTCCATCAGC ATACCTCTTGTACAATGATACATGTTTTGTGTTTTCTTAAAATCATACAAACATCTTCCTCTACTGAGACCATCAAAATT GCTTCCTTTTGTTTCTGAAAAGTTTATCCCGTTTTGCATAAACATAAGAGAGAGCAAGGAAAGCCGCTGCAGACATTGAA GCTGAAAACCAGGGAAATGCAGGGTCCTTAAAGCACACAAGGGATGCCTCAATTTCTTGAGAGGCGTGATACACGATGGA GTGAATGGCATACAGATCATGATCAGAAGACCTATAGTAAAACAAAGCCATCTCAAAATCCAGATGCGACAATGCAGATA CCGCCTTGTTGAGCTTGTACTTGAAGAGGTTCAATCTCTGGACAAACTCAGCATGCTGCTTTTGCTTGAGCAGTTTCCTG TCCCCACCGTGCGTTTCTATGGACTGAAGAACATCCATAGCACTCGATATGCTATAGTTCAAAGACGTCAACAGAACATT CCTCTTTGCTGCATCCTTCTGCACAAAAGACAGGGATGACAACTGGGAGAACGGCCCAAACGGGGTCTGCCCCATACTCC AAGTGTAGTCCACCAAAGTACTATTGTGCCTAGGGCTCCAAGACATATGTGTCGGCGACACCCCCCACATGCTCTGCAAA ATGGATCCAACCAGGGGCCGCTCAAGCTCCCTCGTGTGCGTGAACACATGCCGCCCATTACAGCTATAATCACTCACAGT CTGGGTGTTCCTGGTCCTAACCGCGATCACCATGTCCTTAAAAGCAACAGACTGATGATACCGGTCCAAAAGCAGCAGCG AGGTGTGATCCAAATCAAAGACATACACAGGAACAACCCTCCCAAAATCCTCCTCAGGCACCCCACCCATCTTCCTGACC TCATCAGCCGAATCTGACAGTATCTGATGCAACCGCTTGGAGTCCAAATACTCACTCACAATCAAAGTATAGTTATCAAA CAAGAACCTAGAAGTAAACGAATTCATCGCTCTAGAAACCGCGAACGAACAAACGGGGCACTCCGAGTACTTGATATCAT AAACATTGAAACTCAACTTCTGATCCCCTAAAAGAAGCCCATTCCCCTTACCCTCATCCCTGAAGCTCTTCTCAATTGCC TTCCAATCCAAACCACTCAAATCCTTATCTTTCTCCTCGCCGGAGTAAATATGAATAAACTGAACAACAAGGGTATTATC AAAAACCACAGGGATTCTCAAAGAGGGCGCTAGAAAAACCTGGTAGGCACTGGAGATGAGTGAGGCGATGTCAGCAACGA GTGCCTTGTCAGACTTGGGGCGGAGGGAGTGGAGAGTAGCGAAGGGGTGAAACTCGCCGCGAGGGATGACACCGTCGCCG GAGATAGCAGGGCCGTAGTCGACAGGTCCGGCGGCGAGGTCGATCCAGAAGTAGCGTTGGTCGGAGGTCCAGAAGGTGCC GAGGCAGTTGGTGAAGGAGGGGGAGGAGTCTGCGGCGGAGGGGGAGTAGGTGTAAGCGTAGGGTTTGTGATCGGAGGGTT TGGGATCGGAGTTGGGGAGGTTGATGAGGTAGAGGTGGTGCTGGTTGTGGAGAGGTTCAGAGGAGAGGAAGTGTTGCTTG ATGATTTCGTCGATGGGGGAGAAGGGGATAGGGAGGAGGGTGGAGCGGAGGGAGGCGGTGGTGGAGTGGAGGAGGGAGCG GAGGGTTTGGGAGATTTGGGAGGAGAGAGGGGGGTGGTGGGTGACATGGAGGTGGAGGGTGTGTTGGAGGGAGAGGGAGT GGTCGAAGGGGGTGATGACGTGGAAGGAGGTGGCGGAGGAGGGGGAGAGGAAGGAGGAGAGGAGGGAGGAGGTGTCGGAG GGGAAGTCGCCGATGAGGTGGATGGAGAGGGAGATGGGGATGGGAGGGAGAGAGAGGGAGAGGGAGAGAGGTGATGGAGT AGAGAGGGATTTCTTGATGGAGGAAGGGAGGGAGAGGAAGGAATCGTTGGAGGCGCGAGGGTCGATGCGGGATTGGTGGG TCAGGAAGGAGTCTAGGCCGATGATGGGGGCGGCGGCGATGCTTAGAACAACCAGTGACAGCACCAGAAATAGGGTGGTG GTGGTGGTGGTGGTGGATGACATGGTGGTGCTGCGGCGGAGATTGGTTTTTGGAGAGATTTATGGGTCCGGAGTGTGAAA CATTTGGCCGTGAAAATGGGTTTAGGGAGGGAGGCAGTGAGTGATTTAGTTGCAGTTGCAGGAAGGTAGTGAAGTGATCG TAGTAGCAGCTAGTATTGGTGAGTCAACTAATTTTTTCTTCTTGGTTT
CDS sequence (LotjaGi2g1v0256900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAATAGTGATAAAGCATGAAGAGAACAAGAGGAAGAGCTGGATGTCCATGGCGGAAGAAGTGTTTAAAGTAGCTCC GGGTGCCAAGAGACGGCGAAGAGAGCCTCCTCCAGCTGATAACAAAGGTCAAAAGCAACAGTTGCTGCCACAGCAACAAG TTGAACAAAATTCTACTACCAACACTACTACAAAGAGAAGTTCAAGATTTAGGGGTGTCAGCAGACATAGATGGACGGGT AGATATGAAGCACACTTATGGGACAAGCTCTCTTGGAACATGACCCAAAAGAAGAAAGGGAAGCAAGTTTACCTTGGGGC TTATGATGAAGAAGAATCAGCAGCCAGAGCATATGATCTAGCTGCACTGAAGTACTGGGGAACATCAACTTTCACCAATT TTCCTATTTCAGATTATGAGAAACAGATAGAGATAATGCAAACTATGACAAAAGAGGAGTACTTGGCTACTCTAAGGAGA AAGAGTAGTGGCTTTTCAAGAGGTGCATCAAAGTATAGGGGTGTTGCAAGGCACCATCACAATGGTAGATGGGAAGCAAG GATTGGGAGGGTTTTTGGAAACAAATATCTCTACCTTGGCACCTATAGGACCCAAGAGGAAGCTGCTCGTGCTTATGACA TAGCGGCCATCGAGTGCAGAGGGATCAGTGCTGTGACCAATTTCGACTTGAGTACTTACATAAGATGGTTAAATCTTTCA GCAGGAAATATCTCAGAAACAAAACTAGAACCAACAGTAGTACAGGAGTCTCAGACAGTGGCAAACACAGAAGGGTACAA ATCCTTGGCCATTAACAGCTCTACTTACAATTCGGAGTATCTGAATTCCCCTCAAAAGCATGAAGTGTTCGAGAACAAAA CATACCAATTCTCCAGCCCTAACTCATCTTCTCCAACTGCACTTGGGCTCCTTCTTCGCTCTACAGTATTCAGAGAATTG GTTGAAAAGAATTTGAACATATCTGAGGATGAAACTGATGGGGAAGACACAAAAGATCAACAGCCGCATGCAGCTAGTGA TGATGAGTTGGCTGGGATCTTTCATGATGGAACTGGTCATATATCACCTTTCTGTAATCCCAACAGAGACAACTTAGAAA TGCAAGGAGACATGCAGTCCAGTTTATTAAAGAGAAGTGTCAGCCCTCAAAGTCAAGGTGCAAAAGTGCTAGATAATCCA CACTACCATTGCTGA
Protein sequence (LotjaGi2g1v0256900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEIVIKHEENKRKSWMSMAEEVFKVAPGAKRRRREPPPADNKGQKQQLLPQQQVEQNSTTNTTTKRSSRFRGVSRHRWTG RYEAHLWDKLSWNMTQKKKGKQVYLGAYDEEESAARAYDLAALKYWGTSTFTNFPISDYEKQIEIMQTMTKEEYLATLRR KSSGFSRGASKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYRTQEEAARAYDIAAIECRGISAVTNFDLSTYIRWLNLS AGNISETKLEPTVVQESQTVANTEGYKSLAINSSTYNSEYLNSPQKHEVFENKTYQFSSPNSSSPTALGLLLRSTVFREL VEKNLNISEDETDGEDTKDQQPHAASDDELAGIFHDGTGHISPFCNPNRDNLEMQGDMQSSLLKRSVSPQSQGAKVLDNP HYHC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 9 | 377 | 369 | 6.1E-161 | – | |
| PANTHER | 9 | 377 | 369 | 6.1E-161 | – | |
| MobiDBLite | 26 | 72 | 47 | - | – | |
| MobiDBLite | 26 | 40 | 15 | - | – | |
| MobiDBLite | 44 | 68 | 25 | - | – | |
| SUPERFAMILY | 68 | 137 | 70 | 1.9E-16 | ||
| CDD | 68 | 137 | 70 | 1.03023E-19 | ||
| Gene3D | 68 | 137 | 70 | 1.7E-20 | ||
| Pfam | 68 | 127 | 60 | 6.2E-12 | ||
| SMART | 69 | 141 | 73 | 8.2E-25 | ||
| ProSiteProfiles | 69 | 135 | 67 | 19.546 | ||
| PRINTS | 70 | 81 | 12 | 4.7E-5 | ||
| Gene3D | 170 | 231 | 62 | 4.3E-19 | ||
| SUPERFAMILY | 170 | 231 | 62 | 2.48E-17 | ||
| CDD | 170 | 231 | 62 | 6.76952E-25 | ||
| Pfam | 170 | 221 | 52 | 9.4E-11 | ||
| ProSiteProfiles | 171 | 229 | 59 | 18.004 | ||
| SMART | 171 | 235 | 65 | 3.4E-27 | ||
| PRINTS | 211 | 231 | 21 | 4.7E-5 | ||
| MobiDBLite | 378 | 395 | 18 | - | – | |
| MobiDBLite | 378 | 404 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi2g1v0256900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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