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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0258100 |
| Transcript ID | LotjaGi2g1v0258100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription factor protein; TAIR: AT3G28857.1 basic helix-loop-helix (bHLH) DNA-binding family protein; Swiss-Prot: sp|Q9LJX1|PRE5_ARATH Transcription factor PRE5; TrEMBL-Plants: tr|A0A0B2PV91|A0A0B2PV91_GLYSO Transcription factor bHLH135; Found in the gene: LotjaGi2g1v0258100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:72449369..72451240) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCTAGCAGAAGGTCGAGGCAGCAATCTTCATCTACGAGGATCTCCGATGACCAAATCATCGAACTTGTTTCGAAGTT GCGTCAACTTGTTCCTGAGATTCGAGATAGGCGTTCTGACAAGGTATTTAATTTCAAAACCTTAATTTCTCTCTTTATAA CTCAAATATTATAATAATATACATATACATATATATAGTTTCTAATGTACACACCATAATATGTAATTTATGTACATATT ACTATCATTTAATTTATGAGCTTTCACCTACTTTAGCTAACTATATACTCCTATTTTGCTTAAAAAAATTTAGAGCTGTT CCTTAACATAGATAGTTAGAATAAAATATACACATTAGTATATAGTTTCATGTGCCGCAATCAAAGAAAATAGGCACACC GGAATGTTGATGCCAAGTTTAATTAGAAGGGATGTGTAGGAATTAAGAAGCTATAGCTAGCTAGCTCGAGAAGCACATGT ATTTCATATTATAATAATGGTATGAAGTCAAGGATATATATATAGCCTGAAATTGACCCATATATTAAGGGAGTAGCTCC GCAACAGTTCTAAATCCTATGCAGATCTGTATACACGTCAAAGGATATGATTCACATTGACTCCTACATTTACTATCTAG TTTTTATTTTATTCTTAAGGATGATATCTCAGAATTGGTATATTTGAAACTAATTTCTTAACTCACGATTAGCGTATTAA GTTGTTGAAGGGTGACTGATGTACTTTTTTATACATATTCACAAGAGTGAGAATCGAACTCAACCATTTTTTTAAGAGAC AAATTGCTAAAATATAAGACGATAAATTAAGAGAAATGTTATTTCTACATTATTTGTATTGATTTTTTTTATATCCAATA AAAAATATATAGTTGAGTTTATATAAAATAAAAAAGTATGTAAATAGTATGAACTTTTTTTTTTCTGGAAATGATATTAC AAGATAATAAAAGTATCGCAGAGCCCCAGAAAGAAAATGACTATTAAGAGAATAAAGTTCTCTGCACCTTAACAGTCATG TGGTAAACTTGGACCAATTCGTGAAACAAGACTTCCTGTATGGTCTCTGAATGGGATTGCATAGTACATGTATAAATAGA GACTAGATAGTAGATATTGAGTGAGCATTGTTAGATACAATGAATTCAGAGTTTAAAATATACTATTAAGTGTTGATGAA AAATAAATTCAATTCTCGTTTAGCTCATATGAAAAACAAATCTATAGTGAGAATGTTGCAAGACCGAATGCTTTAAAGTT TTTGGACTAGATCACTCACACGACTAAAGCCTAAATATTATTCTCCGTAACCATCAAGCACCATTTTGGGTCTGCATGCT TCTAGTCTAACAATCATGAATAATAAAAATATCATGTTCACAAATTAAAATAGTTATCTTCTAAATTGATTTTAACATAT ATTGAATTACTTTTTATAACAGAAATTGCTCTTAATTAATATCATATTCGAATTTCGAAGTAAAAATTGTTCATGAATCA ATGAACTGGTGGGGTAATGTGGTGGTCATCAGCATTTGCCTCAGTGACCATGTGTGTGTGTTTGACTGGACTCTGATATA GGGATATGCTTCTTCCTTACATAACTCTGTCCCATTTTGTGACAAAGGACTACATCATATTCATATATATAGTAGAAGAA AATGACTTGTAGCTAATTGAGACATTGATTTTGCAGGTATCAGCATCTAAAGTCCTGCATGAGACCTGCAACTACATCAG AAGCTTGCACAGAGAGGTGGATGATTTAAGTGAAAGGTTGTCTCAGTTATTGGCCTCAATTGATGGTGATAGTCCTGAGG CTGCTATTATCAGGAGCCTAATTAACCAATAA
CDS sequence (LotjaGi2g1v0258100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTAGCAGAAGGTCGAGGCAGCAATCTTCATCTACGAGGATCTCCGATGACCAAATCATCGAACTTGTTTCGAAGTT GCGTCAACTTGTTCCTGAGATTCGAGATAGGCGTTCTGACAAGGTATCAGCATCTAAAGTCCTGCATGAGACCTGCAACT ACATCAGAAGCTTGCACAGAGAGGTGGATGATTTAAGTGAAAGGTTGTCTCAGTTATTGGCCTCAATTGATGGTGATAGT CCTGAGGCTGCTATTATCAGGAGCCTAATTAACCAATAA
Protein sequence (LotjaGi2g1v0258100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSRRSRQQSSSTRISDDQIIELVSKLRQLVPEIRDRRSDKVSASKVLHETCNYIRSLHREVDDLSERLSQLLASIDGDS PEAAIIRSLINQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 92 | 92 | 7.4E-55 | – | |
| PANTHER | 1 | 92 | 92 | 7.4E-55 | – | |
| ProSiteProfiles | 4 | 58 | 55 | 10.347 | ||
| Gene3D | 4 | 77 | 74 | 1.1E-8 | ||
| SUPERFAMILY | 20 | 77 | 58 | 4.84E-9 | ||
| Pfam | 22 | 59 | 38 | 7.0E-5 | ||
| Coils | 55 | 75 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi2g1v0258100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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