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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0259200 |
Transcript ID | LotjaGi2g1v0259200.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | NAC domain-containing protein, putative; TAIR: AT1G26870.1 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein; Swiss-Prot: sp|Q9ZVH0|FEZ_ARATH Protein FEZ; TrEMBL-Plants: tr|A0A072U5H5|A0A072U5H5_MEDTR NAC domain class transcription factor; Found in the gene: LotjaGi2g1v0259200 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:72669474..72672853) extracted from Lotus japonicus Gifu genome v1.2.
GAAAATTTGGGGCAGGGAATTAATCAGCTTGAAAACTACATTAAGAGTATTATATTAAGAAAGTGGTCCATCCTATATCT TACAAAAGAACAATTCAAAATAGAATTGTTTAGTAATTAGAAAAATGAAGGAATGAGAAGCTTGCCTTGTCATTTTGTGC TTGTCTTTGATTTGTTGAAGGTTAAAGGAGAGGTTTGTGAGCATCAGCAAAGTGTGAAAATGGATTAATTACATTATAAA AACCCCAAGAAAGCTACTAATTTTGTAGTCTCTTCTGATCCTTAATTTGGTCATTCACAGAACAAATATATTAAGCTAAG TGGGGAAAGTGAGAAGATCCACTGAATGGGTTTTACTTTTGCTTGACTTGAGTGACATCTTCCTTGGATGGTGTTCTTAA GAAGCTCTTATAATCACAATCTCTTCTCATTAGAGGCATCCTGAAAGAGCGGCAAAAGCTTCGGAAACAGGCTCCTTCTT GGACTAAGGAATTTTGCACAGACTGTGAGTTAGCATAACTTGAAACTTCTTAAGTGCTTTTAGCTTCTATTGTGTCATTA AATTATACTTGAGAACAGCACCTTAATAATGGGTTTTGTTTGGTTTTCCAACATTTGCTAACTTCAACATGCTTGTGTTA TATGCAATATTAATTGTTACTTAACTTAATAGGTTCATGCTTCTTACAGATACTACCAGAGCAAGAATTGACATCTTTAA CTCTGTCTCTATAAAGAAGGTGAAAGAGGAGATGGAATTGGAAGTGAGGAGTGACATGGAAAAGATTGATGATGTGATGG TGATGCCTGGTTTTCGTTTTCATCCAACAGATGAGGAGCTTGTTGGTTATTACCTCAAGAGAAAAGTTCAGCAGAAGTCT CTTCCTGTTGACCTGATTAAACAAGTGGATATTTACAAATATGATCCATGGGACCTTCCAAGTAAGAAGAACTCTTCACA CATGTTTTTCTAGCTTTCTCTACTTTTGCAGTTTTGTTTTGGAAAATGATTTGTAGATTCACTATGTTGTATAGTGTAGA TATTCAACACACATCCAGAGTGAGAAAAAAGAAGAGAAAATAGAGAAGTGGTGAATGTGATATAGAATATAAAAGAGATG ATATAGAGACAAAAAAAAGTGTACGAGTGTCTGCACTATTTATATTTCTGAGTATCATTACTGTTTTGAGTAGTTATACT TAAACATCCAAACACTAGAAATGTCTTACAAACACCCCATTTTTTTCTCAATCTTTATCTTCACATCATATTCACTATAT TTATTTTCATTACTTCTTACAACATAACTCATTTCTAGTGACCAAAGAACAGTTTTTTATTTAAATTTTTGTTATCTTTT TATGTACATGAAGAACTGGCTAGTACTGGGGAGAAAGAATGGTATTTCTACTGCCCAAGGGACAGAAAATACAGAAACAG TGCAAGGCCAAATAGAGTGACAAGAGCAGGGTTTTGGAAGGCCACTGGAACTGACAGGCCTATATACTCATCAGAAGGAA AATGCATTGGTTTGAAGAAGTCACTGGTGTTCTACAGAGGAAGAGCTGCCAAAGGGATGAAAACTGACTGGATGATGCAT GAATTTAGGCTACCTTGTATGCCATCAGACTCTGCAGCTCCTCCCAAGAAACTCTCAGATAAAAGCTTCTCTGCAACTGT GAGTATATATTGCACCAATTCCTTATAATATACATGTATACTTGAGATTCACTTAATCATATGGTTCCTACACCCACTTT GTGGGGCTCATTGTATATTGTAAAAATAAGAGATTATAAGTCCTTGTAGAAATTACTTTTAACCATAAAATTGAATCATT AAGTTCTATTTTTAAAAACACACATTTTGAAGTGTACTCACCTATGGGAGAGATAATAAGAAAGTAGAGATAGATGTAAT ATGTGATAAGAAAAGAAAGGTAAAGAAAAAAAATGAGGTGGATGTTAGTGTTGGGGGTGTTTAAAGATCATACTTGTTTC TCGCGCTCTCATTTGATATTATTTTTTTAGAAAAAAAAAGATTTATTCACACTCACTTTCTGTTTGGACATACGATAGAA AATCAGGGTGAAGTCAAAATCATGATGGACAGTTATAAAAGTAAAAAAAAAATTGCTTCTATCCACCATAAATTTGGTTT TACAGTGATTTTACACCGCATATGAAAAGATTGGTGGTGAATGATGTGTCTCTACTCTCTACTCTCTACTATAGGTGTGT ATTCCAATTCTGATAGTCACTGTAGTGAACTTGAACTAACTAAGTGGTTCATGTGTTTTCAGGATTCTTGGGCAATCTGC AGAATATTCAAGAAAACCAACTCCCTATCCATGGTACAGAAAGCTTTATCTCACCCTTGGATCTCTGAGTTACCAGGAGG CATGGTATCTGATTTACTCACACAGCAGGGTGCAAACTTCAACCAGTTCTGTTCTGAGAATATCACAACACCATCAGCCA TTCAATTTTGTGGTAATACCAAGCAGGAGCAACTACACCTAATCTCCAATGCTAATATCACTAACTTCTCAGTCTCAGCC TCAGCCTCAGATATTCCTGCTTATAAACCTATCATCAATAGCAACACAGTTACCAAATCCCAACAAATTCCTGTTTCAGA TGGAGACCTTGCTGATAACCTCATGTTCTACACACTTGAACCAACAGGCCCCACCAACCCTGACTATATAGGATTTGAAG AGCCAAGCCAGAATTATGGTGGCTTCTCAATTAGCCTCCCTCAGGACATGCAACCAAACATAACTCAAGTGCAGCTTAAT CAGTGGGAAAGTACTGTTGAGAGAACAATTGGGTTTCCCTTCAATTTGCCTTCAAATGAGGCTTGGAAGTCTGCTTTGGC ATCTTGGGACTCACCCCCTTGCTCCACTGAGATGTCCACCTCTTTTTAACAAATGCTACACTTAAACCAAATTGGGGACA TTCATGTGATGTGGGGTGATCAGCAATAGGCATCTAGTTAATTAGTATAGTTACCATTTTTACAATTAGTATATTTACCA CTAAAATCAATGCCAATTTGGGTATTGATTTTACTTGTAAATGTACAAGTGTTTGTTTCCCTGTTCATATTTGTATGTAC CCTGCCTAAAAGCCAATACCACAGGAAAAAGCCACAATTTTATAATTGGGGTGTTGGTATATTATATGACAAGGTAAAGT GATAAATTAATAGACTCTAAGGCCTTGTCAAATTTGTCAGAATTTGTATTGAAGTTTTTGTATATAGTTTTGTTTTGAAG TAAATGAGAGAAGATTCATATGAAATGGTCCATTCTCATATATATTTGTTGGTCGCTTTCTTATTCTTTGTTTTGCTTTA TTAGCTTATATGACATGAAC
CDS sequence (LotjaGi2g1v0259200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAATTGGAAGTGAGGAGTGACATGGAAAAGATTGATGATGTGATGGTGATGCCTGGTTTTCGTTTTCATCCAACAGA TGAGGAGCTTGTTGGTTATTACCTCAAGAGAAAAGTTCAGCAGAAGTCTCTTCCTGTTGACCTGATTAAACAAGTGGATA TTTACAAATATGATCCATGGGACCTTCCAAAACTGGCTAGTACTGGGGAGAAAGAATGGTATTTCTACTGCCCAAGGGAC AGAAAATACAGAAACAGTGCAAGGCCAAATAGAGTGACAAGAGCAGGGTTTTGGAAGGCCACTGGAACTGACAGGCCTAT ATACTCATCAGAAGGAAAATGCATTGGTTTGAAGAAGTCACTGGTGTTCTACAGAGGAAGAGCTGCCAAAGGGATGAAAA CTGACTGGATGATGCATGAATTTAGGCTACCTTGTATGCCATCAGACTCTGCAGCTCCTCCCAAGAAACTCTCAGATAAA AGCTTCTCTGCAACTGATTCTTGGGCAATCTGCAGAATATTCAAGAAAACCAACTCCCTATCCATGGTACAGAAAGCTTT ATCTCACCCTTGGATCTCTGAGTTACCAGGAGGCATGGTATCTGATTTACTCACACAGCAGGGTGCAAACTTCAACCAGT TCTGTTCTGAGAATATCACAACACCATCAGCCATTCAATTTTGTGGTAATACCAAGCAGGAGCAACTACACCTAATCTCC AATGCTAATATCACTAACTTCTCAGTCTCAGCCTCAGCCTCAGATATTCCTGCTTATAAACCTATCATCAATAGCAACAC AGTTACCAAATCCCAACAAATTCCTGTTTCAGATGGAGACCTTGCTGATAACCTCATGTTCTACACACTTGAACCAACAG GCCCCACCAACCCTGACTATATAGGATTTGAAGAGCCAAGCCAGAATTATGGTGGCTTCTCAATTAGCCTCCCTCAGGAC ATGCAACCAAACATAACTCAAGTGCAGCTTAATCAGTGGGAAAGTACTGTTGAGAGAACAATTGGGTTTCCCTTCAATTT GCCTTCAAATGAGGCTTGGAAGTCTGCTTTGGCATCTTGGGACTCACCCCCTTGCTCCACTGAGATGTCCACCTCTTTTT AA
Protein sequence (LotjaGi2g1v0259200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MELEVRSDMEKIDDVMVMPGFRFHPTDEELVGYYLKRKVQQKSLPVDLIKQVDIYKYDPWDLPKLASTGEKEWYFYCPRD RKYRNSARPNRVTRAGFWKATGTDRPIYSSEGKCIGLKKSLVFYRGRAAKGMKTDWMMHEFRLPCMPSDSAAPPKKLSDK SFSATDSWAICRIFKKTNSLSMVQKALSHPWISELPGGMVSDLLTQQGANFNQFCSENITTPSAIQFCGNTKQEQLHLIS NANITNFSVSASASDIPAYKPIINSNTVTKSQQIPVSDGDLADNLMFYTLEPTGPTNPDYIGFEEPSQNYGGFSISLPQD MQPNITQVQLNQWESTVERTIGFPFNLPSNEAWKSALASWDSPPCSTEMSTSF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 5 | 373 | 369 | 1.1E-134 | – | |
PANTHER | 5 | 373 | 369 | 1.1E-134 | – | |
SUPERFAMILY | 14 | 176 | 163 | 2.62E-57 | ||
ProSiteProfiles | 17 | 176 | 160 | 56.146 | ||
Pfam | 19 | 143 | 125 | 3.8E-38 | ||
Gene3D | 26 | 181 | 156 | 3.8E-61 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi2g1v0259200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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