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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0260000 |
| Transcript ID | LotjaGi2g1v0260000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | BED zinc finger,hAT family dimerization domain, putative; TAIR: AT3G42170.1 BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER; Swiss-Prot: sp|Q9M2N5|DSLE_ARATH Zinc finger BED domain-containing protein DAYSLEEPER; TrEMBL-Plants: tr|A0A151RFC5|A0A151RFC5_CAJCA Putative AC transposase; Found in the gene: LotjaGi2g1v0260000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:72804251..72808141) extracted from Lotus japonicus Gifu genome v1.2.
CGATGTAAAAAAAAAAATTATCTTTAAAAAAATAAGTTCTTCAACCCGACAGTTATATTTCATCGGTTCGGGTCTTATCG TGCTAACCCGACGAAATGGGAAAAAATAAACAGCGGGAAACACCAAACCGAACGGAACCGAAGGGACTCCATAGAACCAT AACTAGAAGCTCACTATAAAAGCAAGAAACAACACGCATTTCACTCTCTCAGCTCTCGAAACCCTAACGCTGCCGCTGTT GCCTCCTTCACTCCGGTGGCTTCCCTCTCTCCCGTTCATCTCTGCGACTGCGACTGCGACTGCCACGGTTTCTCTCTCAA CATTTCTGCTTACAACTATTTTCCCCATTTTTTCGATTTCTATGCTGTGATGCGATTCACGTTTACGACTTTACTGTTAC TTACTTGCTCGTTGCAGGTTATCACTGATTGATTCGACGGAGGAAGATCGTATTGCAAGAAAGGGTTAGGTTCCTAAACT TGATTTACTGTTTCTTTTGCGTTTTGTTTGGGTGCTGTGTTATCTGCTTTATGAGTGATGATTGTGGAGTGTTTTTGCTG TATGACCTGGTTGTGTTCATTTCTTTACTCTTGTTGTTGGTGTTGGTGGTGGTTATTTATTAGGGATTTCGGTTTTGTTT TTTTGGTGATTGTTTCATTCAGAATGCAACTATGTTTTGTTTTGTTCTTAGCTTAGTAGTGCTAGCCTTGATAGAAGATA CTGAGCCTGTTTGGATACAGGTTTATTGGAGCTTATTTACTAGAAAACGCAACTTTGTTTTGTTTTGTTCTTAGCTTAGT TGTGCTCGCCTTGCTTGAAGATAAACTTGGTTTGAACCTGTGTTTTGATATGTACGTTATTCGGCAAATAAGTTGATACA TGTTGAGTATTAAATCCAGTAGTTAGTAGTTACTTTCTTTTTTCATTAGAATAGCAGGGTTGTGTTTCTGGTTTTAAGGA GCACTAGTAATCATAGTGTTGGAATCAGTCACCGATTGGCTTTTTTTATTAACTGTTTCTGTAGGAAGTTCTATATAATT CTCTGTAAGAATCAACAAGTTTTTCTTATTTTAATGGAACTCTTCATATATAAAAATCTTAATTTATCATATTATATAAC CATATCTATATATAAATCCCTCAGCTGCTCCTCCAACTCCCCGGAATAAGCCATGAAGAAAGAGGAAATTAAAAAAAATG GAGAGTTCTATTCGTACGACTTTAAATATCAATGCTGATTGATTATTCTTTACATGAATTGTTTGTTATAAATCCAGCAC TTGTTCATAATTGTACTGCACAATCTTCTATAGAAAAATGAATACCGAATTCACAACGGTAGAATTGCTAACAACGGAGT TAGAACTTGCAAAAGTATTTTATTCTTGGCTTTCTTCTTCAAGAAACTGCACAAAGAAAATCAATGATGACAAATAATTT CTGTAACAGATTTGAAAGCTTATATAAAGATCCCAGATAGTGAAGTTGATAAGAAGCAAACCATGGCAGTTGGAATTCAA TTTGAGGATGGTCTTGATACTATGGAGGATCTGGACTTTGAGGGTGATCTTGATATGGAGCCTGTGGAATTTGATCAAGA AAAATGCAGAGATGGTCTTTTAAAGATGATAATTATTGATGGACTGCCGTTCACGTCTGTTGAGAAACCTGGACTTCAAA ATTTACTGAAGGTTATGCAACCTCAATTTGAAATTCCTTCCGCGGAGGATGTTGAAAGAGATTGCATACAGTTGTTTGAA GAGGAGAAAGAAAAATTGAAATCTATGTTGTCTTCCAACCTTCAAATGGTTTCTTTGACAATTGATACTTGGACTTCAAT TGAAGACATGACTTATCTGTGTGTGACTGCTCATTTTATTGATGAGGGATGGGATTTGCATAAAAAGATATTGAGTTTTG GTGTGATTCCTGACCGTGAAGGGGAAAGCATAGGGGAACCTTTAAAGGAATGCCTAAAAGATTGGGGGATTGTCAAGATT AGCACTATAACGGTGGATAAGTCTATTGCTGACAGCACTATACCATATTTGGTTAGGAGTATAAGTGATTGGAATGGTAA TACCATCTTGAAAGGGGAGTGCATGCATCTAAGATGTTTTGTTGACCTCTTGAATTCAATTGTTTGTGACGAGATGAAGA AACTAGATTCCTCTATTGGCAAGATCAGGGCTTCTTGTAGGTATTTGATGTCATCGTCTACTGGTTTGGCTTCGTTTAAG AGGTGTGTCCAATTGGAAAATTTACCCACCAATCAAATCCTAATACTTGATCTGCCAACTAATTGGAATACCACCTACCT AATGTTGGAAGCGGCTGAAAAGTTTGAAAAAGCATTCACTCGCCTTGAAAGTGATGATCCCTCTTATCTAAGTGCCCTTG AAACTGATGGGGGGCCTCCAAATTATGATGATTGGAATCAAGTTCGTATCTTGGTGAAACTTTTGAAGATTTTTCATGAT ACTATACTTGCATTCTCTAGATCGTGGCATGTCACTGCTGACATCTTTTTCCGTCATCTATATCAAGCCCTATATACGTT GAGTAAGTGGATGGAAAGTGATGACTTGGGGTTACAAAGGATGGCAACAAATGTGAAAACTGAAGTTGACAAATATTGGG ACATCAATGGAAATTTAAATTATCTCTTGCTGGTGGCTGTTGTCCTTAACCCACGGTATAAATTGGAGTATATTGAGTTT TGTTTTAGTCATGTGTATGGTCCAGATGAGTACAAAGAGATACTGAAAAACTTGATTGATCTCTTAGAAGAGTTGTTTGC TAAGTATGAGGCACTGTATCCTTTTCCCCCTGATGCTTGTGATGCTGGGGACTTATCATCGCATGTTACCTCCCAATCAC AAGTTGGGCATGATGATAACAGTGAAAATGTTAATTTGTTAGATAAGTTCAAATTAAGGGTAAAGGGAAAGCGAACTGGG CTTATAAAGAACGAGTTAGACAGATATTTGAATGATGATCTTGAGGATGGTTTTAATGGATTTGACATTTTGGGGTGGTG GAGAGGCAACACAACAAAGTATTATGTTCTTTCCCGGATGGCTAGAGATATATTAGCTATTCCAGTATCAACTGTATCAT TGGAGTATGCATTTAACACTGAAGGTCGTGTTCTTGATGAATTTCGTAGTTTATTGAGTGACACCACAGCTGAGGCTTTG ATTTGCGTCCAAAGTTGGTTGAAGTCCAGTACAAAGGTTGGTGATTCTCAAGGTCCAGAAGATGAAGCGGAGCTATCTGG TGCAGGTCTGAAAATTCAACTGTAACCTCCTGGTTTTATTTTGTTATTTCATATTAGATCAGTTTACATCTTTCGATGAT AAATACTTCATATTCTTTAACTACTTTACTGGTCTTGCCAGGAATCATAAGACTCGAGGAGGTTGAGGATGATGATGAAT ATCAAAGCCCATGGCAATAGCAAGGTCAAAACTTTTATGCCTCATCCATTTTTAAGTGTTGTTTCGTTGGTTAGTTTTTT ATTTCATTAGTTTATGTAACACATTTTCTTTTTTTGGAACATTGCAGAAACTATTTGAAGTAATGAACTTGAGAAGAGCA GACTACGAGGAACACTGAAGCACTTTGTGTTTTGCAGTTGAGGATATTCGAAGTGGAGCTGCTTGTTAGTTAATTGCTTA TTTTTTGGTATATGAAGAATTGAAGTAATGGATTTGAGATGATTTTGTAATTTGAAGTTTCTGTGTCTTTTGAACTTAAG TTCTGTTGTCGTACTTATCTTTACTTTGACATTTTATCATTGTAGCTGTTCTTTACTTTATCTTTACTGACTGAAGTTGA AAAGCACCAAAATGTATGAACATGAAGCAGGTTGGTTTTGTTTATTTTAAG
CDS sequence (LotjaGi2g1v0260000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGTTGGAATTCAATTTGAGGATGGTCTTGATACTATGGAGGATCTGGACTTTGAGGGTGATCTTGATATGGAGCC TGTGGAATTTGATCAAGAAAAATGCAGAGATGGTCTTTTAAAGATGATAATTATTGATGGACTGCCGTTCACGTCTGTTG AGAAACCTGGACTTCAAAATTTACTGAAGGTTATGCAACCTCAATTTGAAATTCCTTCCGCGGAGGATGTTGAAAGAGAT TGCATACAGTTGTTTGAAGAGGAGAAAGAAAAATTGAAATCTATGTTGTCTTCCAACCTTCAAATGGTTTCTTTGACAAT TGATACTTGGACTTCAATTGAAGACATGACTTATCTGTGTGTGACTGCTCATTTTATTGATGAGGGATGGGATTTGCATA AAAAGATATTGAGTTTTGGTGTGATTCCTGACCGTGAAGGGGAAAGCATAGGGGAACCTTTAAAGGAATGCCTAAAAGAT TGGGGGATTGTCAAGATTAGCACTATAACGGTGGATAAGTCTATTGCTGACAGCACTATACCATATTTGGTTAGGAGTAT AAGTGATTGGAATGGTAATACCATCTTGAAAGGGGAGTGCATGCATCTAAGATGTTTTGTTGACCTCTTGAATTCAATTG TTTGTGACGAGATGAAGAAACTAGATTCCTCTATTGGCAAGATCAGGGCTTCTTGTAGGTATTTGATGTCATCGTCTACT GGTTTGGCTTCGTTTAAGAGGTGTGTCCAATTGGAAAATTTACCCACCAATCAAATCCTAATACTTGATCTGCCAACTAA TTGGAATACCACCTACCTAATGTTGGAAGCGGCTGAAAAGTTTGAAAAAGCATTCACTCGCCTTGAAAGTGATGATCCCT CTTATCTAAGTGCCCTTGAAACTGATGGGGGGCCTCCAAATTATGATGATTGGAATCAAGTTCGTATCTTGGTGAAACTT TTGAAGATTTTTCATGATACTATACTTGCATTCTCTAGATCGTGGCATGTCACTGCTGACATCTTTTTCCGTCATCTATA TCAAGCCCTATATACGTTGAGTAAGTGGATGGAAAGTGATGACTTGGGGTTACAAAGGATGGCAACAAATGTGAAAACTG AAGTTGACAAATATTGGGACATCAATGGAAATTTAAATTATCTCTTGCTGGTGGCTGTTGTCCTTAACCCACGGTATAAA TTGGAGTATATTGAGTTTTGTTTTAGTCATGTGTATGGTCCAGATGAGTACAAAGAGATACTGAAAAACTTGATTGATCT CTTAGAAGAGTTGTTTGCTAAGTATGAGGCACTGTATCCTTTTCCCCCTGATGCTTGTGATGCTGGGGACTTATCATCGC ATGTTACCTCCCAATCACAAGTTGGGCATGATGATAACAGTGAAAATGTTAATTTGTTAGATAAGTTCAAATTAAGGGTA AAGGGAAAGCGAACTGGGCTTATAAAGAACGAGTTAGACAGATATTTGAATGATGATCTTGAGGATGGTTTTAATGGATT TGACATTTTGGGGTGGTGGAGAGGCAACACAACAAAGTATTATGTTCTTTCCCGGATGGCTAGAGATATATTAGCTATTC CAGTATCAACTGTATCATTGGAGTATGCATTTAACACTGAAGGTCGTGTTCTTGATGAATTTCGTAGTTTATTGAGTGAC ACCACAGCTGAGGCTTTGATTTGCGTCCAAAGTTGGTTGAAGTCCAGTACAAAGGTTGGTGATTCTCAAGGTCCAGAAGA TGAAGCGGAGCTATCTGGTGCAGGAATCATAAGACTCGAGGAGGTTGAGGATGATGATGAATATCAAAGCCCATGGCAAT AG
Protein sequence (LotjaGi2g1v0260000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAVGIQFEDGLDTMEDLDFEGDLDMEPVEFDQEKCRDGLLKMIIIDGLPFTSVEKPGLQNLLKVMQPQFEIPSAEDVERD CIQLFEEEKEKLKSMLSSNLQMVSLTIDTWTSIEDMTYLCVTAHFIDEGWDLHKKILSFGVIPDREGESIGEPLKECLKD WGIVKISTITVDKSIADSTIPYLVRSISDWNGNTILKGECMHLRCFVDLLNSIVCDEMKKLDSSIGKIRASCRYLMSSST GLASFKRCVQLENLPTNQILILDLPTNWNTTYLMLEAAEKFEKAFTRLESDDPSYLSALETDGGPPNYDDWNQVRILVKL LKIFHDTILAFSRSWHVTADIFFRHLYQALYTLSKWMESDDLGLQRMATNVKTEVDKYWDINGNLNYLLLVAVVLNPRYK LEYIEFCFSHVYGPDEYKEILKNLIDLLEELFAKYEALYPFPPDACDAGDLSSHVTSQSQVGHDDNSENVNLLDKFKLRV KGKRTGLIKNELDRYLNDDLEDGFNGFDILGWWRGNTTKYYVLSRMARDILAIPVSTVSLEYAFNTEGRVLDEFRSLLSD TTAEALICVQSWLKSSTKVGDSQGPEDEAELSGAGIIRLEEVEDDDEYQSPWQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 30 | 582 | 553 | 1.8E-120 | – | |
| SUPERFAMILY | 30 | 91 | 62 | 1.44E-5 | ||
| SUPERFAMILY | 89 | 575 | 487 | 2.5E-71 | ||
| Pfam | 332 | 435 | 104 | 1.9E-23 | ||
| Coils | 418 | 438 | 21 | - | – | |
| Pfam | 491 | 573 | 83 | 8.8E-24 | ||
| MobiDBLite | 577 | 613 | 37 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi2g1v0260000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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