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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0260300 |
| Transcript ID | LotjaGi2g1v0260300.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polypyrimidine tract-binding-like protein; TAIR: AT3G01150.1 polypyrimidine tract-binding protein 1; Swiss-Prot: sp|Q9MAC5|PTBP1_ARATH Polypyrimidine tract-binding protein homolog 1; TrEMBL-Plants: tr|I3RZX9|I3RZX9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0260300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:72826429..72833366) extracted from Lotus japonicus Gifu genome v1.2.
AAGATTAAACAAAACGTTTAACGAATCACTCTCAAACTCGTTTTCTCGGAATCGAGCAGCACATTTTCTCGGCACCCAAA CACCCTTCCGAATCCCCATTCTCCGCTCGCCGCGCCGGAGCCCCCAATCGAAATCGTGACCAACCGATGTCTGCGTCAAC AGCGCAACAGTTCCGGTACAATCAAACACCTTCGAAGGTGCTGCACTTCCGCAACCTTCCATGGGAGTGCACGGAAGACG AGCTCGTTCAACTGTGTTGCCCCTTCGGCCAGGTCATGAACACCAAGTGCAATGTTGGCGCCAATAAGAATCAAGCTTTT GTTGAATTCGTAAGCTCCTACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCTCGCTAATATCGTTTTTCAATTGTG AGTTTGTTTTTCTGATTTTTGGATTAGAATTGTGATTGTTAGGGTTTTAACTGTTTGAAAATTTGAGAGAGATTGAGTTC AATAGGAATATGGTTCTAACTGTTCAGCAATATTGAATATCAGAATTGGCTTGATTAACACTGTTGATGTGACTGAGGTG TTTAGCACTTTAGCTTAATAAAATGTTGTGTTATGTGTGCAAATTGTTGGTCTGATCACTATTTTCATTCAGTAATTGGA GACCAAGCTGGATAAGAGAACTGTGTTTTTTCAATTAGAGAAATTGAGGGATTTGGTTACTGCTGAAAGTTATTGGGGAA CTCTTGTAGTACGAGAAGTGTAATAAAGCTAATAAATTATAATATTATCTCATAAAAATCAGACAGTATTTTTTTGGTTG CGCCGAGGTATCCCCACAGTCGGCAGCCATGAGACTAATACTCTCGATGCTCTGAGTTCGCATTAAGTGGGTAGGCCTCG GATGTCAAAAAAAAAAGTGGGCAGGCCTCTCCCAATAAATCATTCTCCCTACGCACCGCCCATGAATTGACATTGGACTA GATGCTTAAGGAACCCAACTATCTACTAGTTGTGTTAGACCTTGTTTGGTTATCAGACAAAACATGGGTTGTCCTTTTTA AAAAAAATAATTAATCATTGTAGGTAAACACTAGGAGTTCCTGTTTATCAAACTCTATTTCACTTGAATCGACTCAAATT TAAAACAAAAAAAGAAGTACAAGCTAGGAATTATCCATGGTGTTTCAGGAGTGACTACTATTGCATCTGGGTGCTGATAC ATATTTGAAACGAGTGTGTTTGGCATTTTGAAGTGTTTTTGCTTCCTAGGTCTTTATGAAAGAGACTGAACTGGAGACTA GATTACAAAGATGAATATTTATGGATAATTTTTTTCAGTAATTTTTCTGAATAAATGAAGTTAAATGGACGGATGGGAAT TTTAGAAGTCTGATGACTCTTAATGCAAGTGAAGTTCAGTTGGAAATATGTAGACCATAAACTACTTGTTTCTGCAACTG GTCTTCGAACTGGCTTTCCCATAGGTTATTTCAGTTTTTTTTCCCTAGTTAGAAGTTAGAACTTTATGTGGATGACAACT GACTAGTGTATATACTGAATCACAACAATAATGGTAAACGAGTAAATGACTCTCAAGATATGAACTATAGTACTGGGCTG CATTACATGCTTTCTTATATTTGATGACACACTTTGATCTGGTTCTTTATTGGTTTTCCTTCTCAAGTTTCTAAGCTCTT AAGTATATATGCTTTACCAGGGGGATCTAAATCAAGCCATTTCAATGGTTTCATATTATGCTTCATCTTCAGAGCCTGCT CAGGTTCGAGGCAAAACTGTTTACATTCAATATTCCAATAGACATGAAATTGTCAACAATAAAGCCCCTGGAGATGTCCC TGGAAATGTCTTGCTAGTAACCATGGAAGGCGTAGAAGCTGGAGATGTGACAATCGATGTTATCCACTTGGTAAGTGCTA CTGAGTTGACTAGTTGATTAGGATCTGTATGTGAGGTTGCATGCTCCTTGTTTGTGTAAAATGTGCATTGTACTACTTTC TTTGTAATGCATATTTGCTAATTTGATTTGGTACATGTCTTTATGCTTTATTCAGGTGTTTTCTGCATTTGGCTTTGTAC ACAAAATCGCTACATTTGAAAAGACTGCAGGTTTCCAGGTTAGTGAAACAGTAAATTAAATTGCACTTCTTTCAATGTAT CATTCTCAGTATTCACTGTGTGTTATTTTGTGGAAGGCTTTGATTCAGTTCACTGATGCTGAGACTGCTTCTTTGGCTAG GAATGCACTGGATGGAAGAAGCATACCCAGGCAAACTTTGCTTTTACATTTCCTCTTTTCTTTTTCACCCTCATCATTAA TACTAATGATTTCTTTTATGTACAGTTACTTGCTCCCACAGCATGTTGGTTCTTGTAACTTGCGTATTTCATACTCAGCA CATAGAGATCTCAATATCAAATTCCAATCTAATCGCAGCAGGTAGTAATGGGGATTCGAGACAGCTATTCTCTGTTGTGT TTAAACTTAAATGCCCTTGCATGTAATTTTTCATGGTGTCCTCTAATGTGCTGAAAACTGAAAGATATATAGGTTTTGTC ATCTAATAGTTATATAAAGTTGGCAGTCAGAATGCAGATGTGTTGTAATGACCTCTTACTAGTTTTCTTTCTTTTTCCAG ATGTTAGATAAATTTGTTATCATTAGACTTTAATTATGAAAAATATTATTCTCTTGTTATGGAAACCAATTGTATAAAGC TACCTTTTCTGCATGTGGGTAATTTGTTTAATCATATTAGAGAGTTAATATTAACTGTGTTTTGTTCTTAAATCTCAATT TAATTTGTTCTCCTTGATCTTTATCTATGATGATAATTCTGATTTCAAAACGTACAAACTGCCTTTTATAAGTGCAATCT CTATATATCAATTTGTAGTTGTTGTCACAGGCGCACATCATCTAGATTTCTTAATTGAATCGTCAATCAGACACAAATTT TTTTCTATGGTTGATTATGCCAAGATCCCCACTGGCCATTATCAAGTGATATTTTCTTTTTGATAATATCTTCTTTTATA AAAACTATCAGACAATACTTTTTTTCCCCTTTTATGGAGATTCCAAGTTTAAAACCTATTTTCAAAAAACTAGATATATT CTAGTTGGCAGGAAAAGGAAATAGAAGTGGAACATCTATAGTTACATGATATTTAAATTCATATGGTTGATTTTGTACAA TATCCTTACTGCATTTATTTTTGAAATCATTTGTTGATATTAGTCCTATGACAATCCTTGGTTTGGTTATATTCATTTAC TCTTATGACTTTGTAGGGACTACACAAATCCAATGCTTCCTGTTAATCAGACTGCTATTGACGGGGCATTACAGGTACTT TTGTTCATTTTTTCTTCAATAATGTATTTTTTTCAAGATTTTAGTATGTTCTTACAATTTATAATTTTCAGCCTGTTGTT GGTCCTGACGGGAAGAGAACCGAATCTGAGAGCAATGTGCTTTTGGCTACAATTGAAAATATGCAGTACGCTGTCACTGT GGAAGTTCTTCACACGGTGAGAACTTGTATTTCTCATTAAAATTTCAAATTTATAGATGATTATACTCAATGCTGCTTAT TTGTTACAGGTGTTTTCTGCATTTGGCACTGTGCAGAAAATTGCTATATTTGAAAAGAATGGTCAAACTCAGGCACTGAT TCAATACCCTGGTATTAATCCTATTTGACTGATGCTCTTGAGTCTGTAGTCTTTATTTTTACTATGAACTTCGAAAGTAT ATACTATATATACACATCTTTATATTCCTTTTTTGCCACACATTTATACAATGTGATGATAATTTTCCTTCTGCTTCACT GTGGAATGTGGGTGATGGTTCTCACTCATGAATGGAAAATAGTCATGATACTATTTTTCTGTATGATTATGTGTTTTCAT CTGTGAGGGGAACTCTACTCATGGTGTTTAACAGAAACTACTCTGATAGAATGGGCAGCTTTGTTGTATTTTTTTAGCTT CTTTGGCGTGCTATATTCTGTCTTTTATTCTATATTAAGCTGATAAATCCTAGATGATAAATTACCACCTAATGGTATTT CTTCTCATCAGTTTTTCTTTTGCTCCAGACCATGGTTTATGATCATATGTAGATTAGATTAGGATAACGTGGCATATTCA AATAAAACCAAACATGAAAACAACAGCTGTCTGAGCATGATAGGCTCCACTCAAACTCGACTAATTATGTCAAATATTTA TTACTCTATATGATATAATTTAAAATTTTACTAATAATTTTTAATGATATGATTTATTGATTGAAAATTACTCAAAACAA TCTTGAGCTTGATGTTGATAAAATAAAGTTTAAGCTGAGTTCAGGCTTAACTTGGCTTTATTTCACCCCTAGAATATGAT TAACACTAATTCTAGTAGTTTCTCAAAGTCCCGTCATTACCATTCTAGGCTTTTTGTTTTGTATAGTTAATTATGATATA GTTAATCTAAAACCATTACTCTTAACCCCTGAACTTTTTAACCGTAATATATCATGGAATAGATCTTCCTTTATTCTATA GTCCATTGAAATTCTTAATTTGTTTATGTATAGTAATTGTGCATCCTTTACTTGACAAATCATTTCCTTTTGTGGCCCGT CCTTTCAGATGTCACAACAGCAGCAGCTGCCAAAGAAGCTTTAGAGGGGCATTGCATATATGATGGTGGCTATTGTAAGC TTCATCTAACATACTCTCGTCATACTGATCTCAATGTAAAGGTATAAAGATATGTGTTTTAGTTAGTGTTCATGAGGGGA AAGTATTGGGGAGAGGGGTTTAAAGATATTCTTAGAAGCAATGTGGACAATTTCTTGATCACAAATGGGTCTTGAGTGTA TGCTCCTCGAAACTTGATTGACCTTTTACAGTATTTTCTTTTTAATCTGTGAATGACTATCGCAGAATCTGATTTTAAGT ATTAAATATAATTGTTTTTGGTTTTAGGCTTACAGTGACAAAAGCAGAGACTATACAGTGTTGGATCCTAGTCTCCGTGC AGCACAAGTTCCTGCAACAGCATGGCCGAATCCTCAGGCTGCTCCTATGTACCCTGGTAGTGCCCCTGCATTACAGGGTC AAGTATCCGGTGGACAAATGTCATCATGGGATCCGGCCCATCAGGAAGTTAGCCAAAGTTATATACCCGCACCTGGTACT TTTCCCGGTTATTCCCCAGCAGCAACATCAAGCAACCATTTAGTTCATAATGCAAGTTCTATGGGAATCACTCAGAATGT ACATTCACAGCCCAGTGTTGCTTCACCTCCAGGTCCTGGTTCCTCACCTCATACACAACCCAGTTCATTTGCTGGTCTTC AACATTATCATGGTTAGTAATATTTCAACTGAATGAAAGAGATTCCCCTCTGCCCCCTACGTTTTTTTTGTTGGATCATA AGAGGTCTACCGAATTACAGTTTCAATTTCAAATGTCTCAAGTGCAATGCCTCTCCTCATATTGGTCGCTCTTTCGATGT ATTATTCTTACTTCTTGCATGGCTTTGTTTACACATTCATTGTTTTTGTTTATACCAACCCTTGCGGGCACGAGGTGCAC AGCGGTGAATTCTTTCCATTTTTTCTGATTTGGATGCCTGTATTTTTCTTTGTTGTTTCCTCCTTTAATGGGTGTCAAGT TGGTACCCAGCTAATGGGGATTTGTGCTTTGCTGTGTAGGTCCTTTCCTTGGTGTATGGCAACAAAATACATACACCCCC CCCCCCCCCCTCTTCAATTATGTAAACCGCCACATTTTTGTGCCTTTTTTTTCTGCTATAGCGTGCATAAGTTAAAGTTC AAGAATTAACTTTGCGTTCGATTGTTCAAGAAATATTAATATAGTATTAGAGCCCATGTAGTCTCATCATACATGGTCCA AGGAAAAAATCCAAGGATGAAAAAAAGGAAAGGAACTAGAATCCCAAACAAAAGGAAGAAAAAAAGGGAGCATAAGTTCA ATTCATTGAAAGATACCAAACTCAACTCGACTAGCCCACCCACATAGAGGGTTGAAGAGAAAAATAGAAGGATATAAGCT TGGATGCTAAAATGATTCTAACAAACCAAACCCTACAGTAGAGAAAGGGGGAAAATATTAGTGTAGCTGCTGCTCCCCCT TTGGGGGTTCCTCTTTCATTAAGGAGGCTTTTTCTTCATGAAAGTGTTTCGTTTTGGTAAGCTCCTCCTCCAGTCCAAAC CCTCCATTCACCCTCCGTTACCTTAAATGTTGGTTTGTTGTCATCAGTGGATTTCTTTTGGTCGTTCTAGTAGCTGTTCA TGCACATCTCCAGTAGAGTTGGTTAGGTCTCGAAAGTAAAGAAGCGACATTGTAAGAATTTTATCAACTTTTCGCTTCTA GACAACAATTAGAGGCTATGGTGGAGCTTTGGCTTCATTGTTGAAATTTGGAGGTCTATGAGCTTTGTATTGCTTTTTAG AGTTTCTACTTCATACATTCAGTTGGATGCATCAGCCTGTGTGAACATGATTTATTTTTTTTATCTACTTATCTATATGC ATTGTACTGCTCCTTCTTGAGATTTATACTCCCACATGATGTAAGTGTCGTTGGACAACCCATTTGAGTGTTTATCTAAA ACACCTTTGAACCCTAAAAAAAGCTTGGATGCTAAAAGTCTAATTGTGTTAAGTCATTTTAGATTAAATTTACACCCTCA AACCGTAAATTTATTATTCCAACAAGTGGTTTTACAACATGATGATGCTAATGCCTCACATAGTTGATAGACGTACTAGA GATTTAACAAAGAAAACCCTTATAAAAATAGAGCAATTCTCATCCTTAAAATAATTTTCATATTAGAGTTAGAACTAATA CAAGTTCTTACGAGACAAATTGGTTGGTATGCATATATATGATTGGACTATACTACCA
CDS sequence (LotjaGi2g1v0260300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTGCGTCAACAGCGCAACAGTTCCGGTACAATCAAACACCTTCGAAGGTGCTGCACTTCCGCAACCTTCCATGGGA GTGCACGGAAGACGAGCTCGTTCAACTGTGTTGCCCCTTCGGCCAGGTCATGAACACCAAGTGCAATGTTGGCGCCAATA AGAATCAAGCTTTTGTTGAATTCGGGGATCTAAATCAAGCCATTTCAATGGTTTCATATTATGCTTCATCTTCAGAGCCT GCTCAGGTTCGAGGCAAAACTGTTTACATTCAATATTCCAATAGACATGAAATTGTCAACAATAAAGCCCCTGGAGATGT CCCTGGAAATGTCTTGCTAGTAACCATGGAAGGCGTAGAAGCTGGAGATGTGACAATCGATGTTATCCACTTGGTGTTTT CTGCATTTGGCTTTGTACACAAAATCGCTACATTTGAAAAGACTGCAGGTTTCCAGGCTTTGATTCAGTTCACTGATGCT GAGACTGCTTCTTTGGCTAGGAATGCACTGGATGGAAGAAGCATACCCAGGCAAACTTTGCTTTTACATTTCCTCTTTTC TTTTTCACCCTCATCATTAATACTAATGATTTCTTTTATGTACAGTTACTTGCTCCCACAGCATGTTGGTTCTTGTAACT TGCGTATTTCATACTCAGCACATAGAGATCTCAATATCAAATTCCAATCTAATCGCAGCAGGGACTACACAAATCCAATG CTTCCTGTTAATCAGACTGCTATTGACGGGGCATTACAGCCTGTTGTTGGTCCTGACGGGAAGAGAACCGAATCTGAGAG CAATGTGCTTTTGGCTACAATTGAAAATATGCAGTACGCTGTCACTGTGGAAGTTCTTCACACGGTGTTTTCTGCATTTG GCACTGTGCAGAAAATTGCTATATTTGAAAAGAATGGTCAAACTCAGGCACTGATTCAATACCCTGATGTCACAACAGCA GCAGCTGCCAAAGAAGCTTTAGAGGGGCATTGCATATATGATGGTGGCTATTGTAAGCTTCATCTAACATACTCTCGTCA TACTGATCTCAATGTAAAGGCTTACAGTGACAAAAGCAGAGACTATACAGTGTTGGATCCTAGTCTCCGTGCAGCACAAG TTCCTGCAACAGCATGGCCGAATCCTCAGGCTGCTCCTATGTACCCTGGTAGTGCCCCTGCATTACAGGGTCAAGTATCC GGTGGACAAATGTCATCATGGGATCCGGCCCATCAGGAAGTTAGCCAAAGTTATATACCCGCACCTGGTACTTTTCCCGG TTATTCCCCAGCAGCAACATCAAGCAACCATTTAGTTCATAATGCAAGTTCTATGGGAATCACTCAGAATGTACATTCAC AGCCCAGTGTTGCTTCACCTCCAGGTCCTGGTTCCTCACCTCATACACAACCCAGTTCATTTGCTGGTCTTCAACATTAT CATGGTTAG
Protein sequence (LotjaGi2g1v0260300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSASTAQQFRYNQTPSKVLHFRNLPWECTEDELVQLCCPFGQVMNTKCNVGANKNQAFVEFGDLNQAISMVSYYASSSEP AQVRGKTVYIQYSNRHEIVNNKAPGDVPGNVLLVTMEGVEAGDVTIDVIHLVFSAFGFVHKIATFEKTAGFQALIQFTDA ETASLARNALDGRSIPRQTLLLHFLFSFSPSSLILMISFMYSYLLPQHVGSCNLRISYSAHRDLNIKFQSNRSRDYTNPM LPVNQTAIDGALQPVVGPDGKRTESESNVLLATIENMQYAVTVEVLHTVFSAFGTVQKIAIFEKNGQTQALIQYPDVTTA AAAKEALEGHCIYDGGYCKLHLTYSRHTDLNVKAYSDKSRDYTVLDPSLRAAQVPATAWPNPQAAPMYPGSAPALQGQVS GGQMSSWDPAHQEVSQSYIPAPGTFPGYSPAATSSNHLVHNASSMGITQNVHSQPSVASPPGPGSSPHTQPSSFAGLQHY HG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 179 | 179 | - | – | |
| PANTHER | 1 | 432 | 432 | 2.3E-204 | – | |
| PANTHER | 1 | 432 | 432 | 2.3E-204 | – | |
| Gene3D | 2 | 105 | 104 | 1.2E-24 | ||
| SUPERFAMILY | 6 | 102 | 97 | 2.15E-18 | ||
| CDD | 15 | 95 | 81 | 1.27497E-52 | ||
| ProSiteProfiles | 17 | 95 | 79 | 11.452 | ||
| SMART | 18 | 91 | 74 | 4.4E-8 | ||
| Pfam | 22 | 70 | 49 | 2.7E-7 | ||
| Pfam | 107 | 176 | 70 | 7.6E-4 | – | |
| SMART | 111 | 183 | 73 | 2.2 | ||
| SUPERFAMILY | 123 | 187 | 65 | 7.06E-9 | ||
| Phobius | 180 | 204 | 25 | - | – | |
| TMHMM | 180 | 202 | 23 | - | – | |
| Phobius | 205 | 482 | 278 | - | – | |
| Gene3D | 266 | 368 | 103 | 1.4E-30 | ||
| Pfam | 266 | 345 | 80 | 5.0E-9 | ||
| ProSiteProfiles | 267 | 347 | 81 | 8.706 | ||
| CDD | 267 | 363 | 97 | 7.19432E-63 | ||
| SMART | 271 | 341 | 71 | 0.041 | ||
| SUPERFAMILY | 271 | 364 | 94 | 1.61E-15 | ||
| MobiDBLite | 385 | 411 | 27 | - | – | |
| MobiDBLite | 396 | 411 | 16 | - | – | |
| MobiDBLite | 449 | 482 | 34 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi2g1v0260300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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