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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0260500 |
| Transcript ID | LotjaGi2g1v0260500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | NAC domain protein; TAIR: AT5G61430.1 NAC domain containing protein 100; Swiss-Prot: sp|Q9FLJ2|NC100_ARATH NAC domain-containing protein 100; TrEMBL-Plants: tr|I1LWL6|I1LWL6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0260500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:72857483..72859767) extracted from Lotus japonicus Gifu genome v1.2.
GAATGAGAACACAGTGACATATATCAAACAGTTACGTGCAGGTTCAGCTGGTGAAGTGTTCCTGGTCAAGTTGAAGAGGA AAAATAACCTCACCAAAGTGTAAAACGACACTGCTAAAAGCAAGAAAAATCACACAACACACACAAGGTTGTTCTTCAAG CCACGGTTCTCTGAATCCAAAAAAGAAAACCAGTATTTAAGGAACCATGCTTATCACAACAACACTGTCATTTCTTAACA CCTTCAAATACCTCAAAACCTTCTCCTTTCAGATCACAATTCTCATTCTCTCTAATCTCTTATCTCCTCTTCTGTTATAC ACATTCTCAGTAAATTTCTTACCTGAAAGTTATCTCTTCTTCTTAATTCTTCCACCTCATCACATCCTTATCTCAATCTC TTGACAGGTTGGCACCTTAATTTTGTTTTTACTTCAGGTTCAGGAAAATCATCATTAAAAATTCTAAACTCTTGAGTGTG TTGATTGAGTCCTGTGTCAATTAATGCTTGTAAAGTTTTTGTCTTCTTGTTTGAGCCACAAGTTTAAATAGATGGGTTTC TCAGTTTGTTCACAATTGTTTGTTTAATGAAAACACAGGATTTTAATCAGTGCTGTGTGATGGAAGCAATGGTGAAGAAT TTCTCCAGAGAGGGACAGCAGAAATTTAAATTGCCACCAGGATACAGGTTTCATCCAACTGATGAAGAGCTCATAACTCA CTACCTCTCACAGAAGGTTCTTGACAGCAATTTCTGTGCTATAGCAATTGCAGAAGCTGATTTGAACAAGTGTGAACCAT GGGATTTGCCTTGTGAGTCTCTTCTTCTGTTGTTCTCACTTTTCTACATTCAAATTATGCAATTTTCTTCTGTTGCCTTG GGATTTCTTCTGTTTTATGGTGCCTTCAAATTATGCAATTTTCATTTTTGAATGCAGGGATGGCCAAAATGGGTGAAGGT GAGTGGTATTTTTTCTGCATGAGGGACAGAAAATACCCAACTGGTTTGAGGACAAACAGGGCCACTAGTGCTGGCTATTG GAAGGCCACAGGCAAAGACAAGGAGATATACAGGGGAAAGACACTGATTGGAATGAAGAAAACACTGGTTTTCTACAAAG GAAGAGCTCCAAGAGGTGAAAAATCAAACTGGGTCATGCATGAATATAGATTGGAGGAGGACAAACAGTCTGTGCAGAAT CTCCCCAAACCTGCTATGGTACTAGTGTTTGTTTCCTGTTTCTGGTTCTCTTTTATATTATAGCATTAGGTGAGTTTGTG TATTTTTGTTAACATGGTTGTTTTGTTTTGTTTGTGTTTGTTTTCCTTTTAGAAGGACTGGGCTATCTGCAGAGTTTTTG AGAAGGGTGCTCATGGAAAGAAAATGCATGTTCCTTTTAGCCCTTTTGCAAAGGAAGTACTACTGCCTCCATTGATGGAA TCTTCTCCATACAACAGTGAAACTACTAAAACTGCTATTGGGGAATCATCACATCACTCACATGTGACATCCTTCTCAGA CCCAAATCAAACTGATGAACAAAGGACAACACAAGATGACATAGTTGATAGCCTTGAAACTCCAATGATAACATCTTCAT ATTCTTCAAACCCCTCTGATATTTCCCCTGCTCCTTGGAATTTTATCAATGTTGCCCCCACTGTGCCCCACCAATCCACA CAAATTGCACAAGTTGGGATTTCACAGGGCTCAGATTATCTCATGGTTCAAGAAGAGTCCATGCTGGGGATGTTGATTGA AAACCAAGGATCAAGTACAGAGACAAAGTATCAGAAAGCTCAGGAAAGGGACTTTGATGCTGACAACTCCTCTGTGATGT ACAACAATCAAATGTTCCCAATGAATCAGGAATTTTCATCAGCTTCTGTAGGACAGCATGTGGACACTGGTTTTCTGTGG AATTTCTAAGGAAGGTTGGTTGGTATTTTGCAGTTTAAAGATATAAGAAAGTTTAGTCATTAGCATTGTTATACATGTAA ATAATTTGCATTTAAGTTGATGTTATGTCCTAGAGAGTACAGGAAATGGATGTAAACATTGTCCTTTTTGTTATAGTTTT TCGAAGTTGTATTGCTTGATAGTTTTATAAACTTAGTACTTTATAGTAGTTATTTTGAGGTTTGTGCCAAAAATTCATTG TGCGAGATTAATTAAATATATCTTTGTATCAAACGATTGTCTTATTTTAGTCTTTTTGACTTAAGCCACATATATCCTCG ATTAAGACAATTATATTCTAGTTGAGTAGACTATAATGAATGTCA
CDS sequence (LotjaGi2g1v0260500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAACACAGGATTTTAATCAGTGCTGTGTGATGGAAGCAATGGTGAAGAATTTCTCCAGAGAGGGACAGCAGAAATT TAAATTGCCACCAGGATACAGGTTTCATCCAACTGATGAAGAGCTCATAACTCACTACCTCTCACAGAAGGTTCTTGACA GCAATTTCTGTGCTATAGCAATTGCAGAAGCTGATTTGAACAAGTGTGAACCATGGGATTTGCCTTGGATGGCCAAAATG GGTGAAGGTGAGTGGTATTTTTTCTGCATGAGGGACAGAAAATACCCAACTGGTTTGAGGACAAACAGGGCCACTAGTGC TGGCTATTGGAAGGCCACAGGCAAAGACAAGGAGATATACAGGGGAAAGACACTGATTGGAATGAAGAAAACACTGGTTT TCTACAAAGGAAGAGCTCCAAGAGGTGAAAAATCAAACTGGGTCATGCATGAATATAGATTGGAGGAGGACAAACAGTCT GTGCAGAATCTCCCCAAACCTGCTATGGACTGGGCTATCTGCAGAGTTTTTGAGAAGGGTGCTCATGGAAAGAAAATGCA TGTTCCTTTTAGCCCTTTTGCAAAGGAAGTACTACTGCCTCCATTGATGGAATCTTCTCCATACAACAGTGAAACTACTA AAACTGCTATTGGGGAATCATCACATCACTCACATGTGACATCCTTCTCAGACCCAAATCAAACTGATGAACAAAGGACA ACACAAGATGACATAGTTGATAGCCTTGAAACTCCAATGATAACATCTTCATATTCTTCAAACCCCTCTGATATTTCCCC TGCTCCTTGGAATTTTATCAATGTTGCCCCCACTGTGCCCCACCAATCCACACAAATTGCACAAGTTGGGATTTCACAGG GCTCAGATTATCTCATGGTTCAAGAAGAGTCCATGCTGGGGATGTTGATTGAAAACCAAGGATCAAGTACAGAGACAAAG TATCAGAAAGCTCAGGAAAGGGACTTTGATGCTGACAACTCCTCTGTGATGTACAACAATCAAATGTTCCCAATGAATCA GGAATTTTCATCAGCTTCTGTAGGACAGCATGTGGACACTGGTTTTCTGTGGAATTTCTAA
Protein sequence (LotjaGi2g1v0260500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKTQDFNQCCVMEAMVKNFSREGQQKFKLPPGYRFHPTDEELITHYLSQKVLDSNFCAIAIAEADLNKCEPWDLPWMAKM GEGEWYFFCMRDRKYPTGLRTNRATSAGYWKATGKDKEIYRGKTLIGMKKTLVFYKGRAPRGEKSNWVMHEYRLEEDKQS VQNLPKPAMDWAICRVFEKGAHGKKMHVPFSPFAKEVLLPPLMESSPYNSETTKTAIGESSHHSHVTSFSDPNQTDEQRT TQDDIVDSLETPMITSSYSSNPSDISPAPWNFINVAPTVPHQSTQIAQVGISQGSDYLMVQEESMLGMLIENQGSSTETK YQKAQERDFDADNSSVMYNNQMFPMNQEFSSASVGQHVDTGFLWNF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 20 | 179 | 160 | 5.36E-63 | ||
| PANTHER | 21 | 359 | 339 | 8.7E-128 | – | |
| PANTHER | 21 | 359 | 339 | 8.7E-128 | – | |
| ProSiteProfiles | 29 | 179 | 151 | 58.054 | ||
| Pfam | 30 | 154 | 125 | 8.9E-40 | ||
| Gene3D | 38 | 184 | 147 | 4.1E-58 | ||
| MobiDBLite | 208 | 241 | 34 | - | – | |
| MobiDBLite | 208 | 236 | 29 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi2g1v0260500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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