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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0260600 |
Transcript ID | LotjaGi2g1v0260600.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Myb transcription factor mixta-like protein; TAIR: AT5G15310.1 myb domain protein 16; Swiss-Prot: sp|P80074|MYB1_PHYPA Myb-related protein Pp1; TrEMBL-Plants: tr|G3FSI3|G3FSI3_LOTJA MIXTA-like transcription factor; Found in the gene: LotjaGi2g1v0260600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:72881229..72883807) extracted from Lotus japonicus Gifu genome v1.2.
GCCCATCTCTTCATTTACGAAACCCTTTGTCCTTTCTTTCTCTCACTCTCTCTCTCTTTCCCCCACACAGTTTTCTTCTT CTTCTCTTCATTTTCTATATAAATAAGAGGAGAAGCTACTGCAGTCTTTAGCTAGCGTTCCTTCCACTTAATTCTAAATG GGAAGATCACAATGTTGCGACAAGGTTGGTTTAAAGAAAGGACCGTGGACTCCAGAGGAAGATCAGAAGCTTTTAGCTTA CATTGAAGAGCATGGCCATGGAAGCTGGCGTGCTTTGCCTGCAAAAGCTGGTAAGTTTTTCTTTTAATTTCTTTTCCTTG ATAGATAATATATTTGCAGTGTAGAATCCATGAGTGTTATATATAAACTGAAACTCCTCATATGTTATTGTATAGGACTT CAAAGGTGTGGCAAGAGTTGTAGACTGAGATGGACCAATTATCTTAGACCTGATATTAAGAGAGGGAAGTTCAGTTTGCA AGAAGAGCAAACCATCATTCAACTCCATGCCCTCTTAGGGAACAGGTTTGGTATATACATTCATTTCTTAGATTTTCTTG AATTACAATGTGAACACCTATGTGTGTTTGTGAGTGTATATCTCCTATACAATTTTGTTCCACTTTTTTTTTTGAATTTT AAATGACAAGAATTATGACACCTCATTTCAACTTGATATTTTGTATTTTCAGCACTTAAAATATAAATCATTAAATTTTC TGTGTGGTAGCAATTATTTCTTTTCTTTTCCAATTCCCTTCCAGTGCAGTGTGTCTTAAATGCAATGTCACCTCAATTTC TTCCCCCAATTCCAATCTATCTCCAACAAATAATTTGAATTGTGCTTCTGCCATTTTCATTACACCATTTACTTCCCTCC CTGACATCCAAGTTCACTCAAGGTGAATCTTTAATTGCAAAAGGATATATTATTGTCTATCTCCTGGTTCTACCCAAAGC AATAAAAAGAAATGGCCAATGCATGTGATTTCTAATGCCTTAAGACATTACAGAAATTAACTATGAATTTTTCATCTAGC TAGGGTTTGCATTGACATTTTATGTTGTGTTAACACAATTATTAAAATAAAATTCACATAAGATAATCCTAATCCGTGTT GTGTGTCGTACTCAGGTGGTCAGCTATAGCCACACACTTACCAAAGAGAACAGACAACGAGATCAAGAACTATTGGAACA CACATCTCAAGAAAAGGTTAACTAAAATGGGAATTGATCCGGTGACCCACAAGCCCAAGAATGACGCACTTCTCTCCAGC GACGGCCAGTCCAAAACCGCCGCTAACCTCTCCCACATGGCTCAGTGGGAGAGTGCTCGCCTTGAAGCAGAAGCAAGACT TGTTAGGGAATCAAAACTTCGTTCACATTCGCTCCAAAACCACCACCTTGGAAGTTCTCATCATCATGTTTTTGCATCTT CATCTTCTGCTTCAACTAATTCAGCCCCAATCCCAAACAACACCAACAAATTAGAAGCACCACCACTGCCGCCGTCGCAG CCGCAATTAACATCATCAACATCTTTTCCCTCATCATCATCATCACGTTCCCTTGAGGCCATTAAGTCTTGGAACAATGG AGGGTGGTTATTAAAAGCTAACAACAATGAAGGAAATGGTGGCACTAATATTAATGACCTTGAGTCTCCTACCTCAACCC TATCTTTCTCTGAGAATAACAATGTGCAACCAATCATGACTGTTGGATCAGCAACAGAAAACAATAGCACTGCAGTGGCT ATGATTGAGTTTGTGGGCACTAATTCAGGTTCTTCTGAGACAGGAGGAGGAGTTGTGAAAGAAGAAGGTGAGCAGTGGAA AGGTTATCATGAGAGTTCAATGACTTTCACTTCTGGATTTCATGAGTTCATGGAAGGTGTTGTTGGAGATGATGTTGTTG AAGAAGGGTTCACCAATCTTCTACTTAAAACAAACTCCGATGACTCGGAAGGCGGCGGAGAATCTAACAATGGTGGTCGT GGGAGTGGCAGTGATTTCTATGAAGCTGATAACAATAACTACTGGAGCAGCATTCTTAATTTAGTGAACTCTTCACCATC AGATTCTCCAATGTTCTGATCAGAGCAATTAAATCTTGTGTAAGTATGGACATGGTGTCTATAGAGTCTAGACACAACTA ATTGAAAATTCAAGATGCATTAAGAAAAAAATCTTCAGATTATTTTAATGTTATCTTGAATTTTTTAATTAGTGTGACAA CTAGACACTTCACTTGTACAAGAACTGTTTATGCCATGGTTAGCTAGTGAGTGTGAGTGATCATGATATATGTATTTATA TAGGATAGTTCTCAAATTCAAACTGCAGTCAAAGGCTATTGATTTTATTTCCCATTGCCATAATAAGCGAACTGCTCAGA TAGACTATGTTGAATTTCCATAGTGTTTTTAACAGAGACTTTGGTTGCTTCCACCATCAAATGTTGATATCGATTTGTTT GGATTTGACTTGATTAGCTTCTATGTCTAAAGTCTGTTTTTCTTTTTATGAGCTGGAGACATGTTTCTTGACAGTAGATA GTGTGTGAAAGAAGACAAG
CDS sequence (LotjaGi2g1v0260600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAATTGATCCGGTGACCCACAAGCCCAAGAATGACGCACTTCTCTCCAGCGACGGCCAGTCCAAAACCGCCGCTAA CCTCTCCCACATGGCTCAGTGGGAGAGTGCTCGCCTTGAAGCAGAAGCAAGACTTGTTAGGGAATCAAAACTTCGTTCAC ATTCGCTCCAAAACCACCACCTTGGAAGTTCTCATCATCATGTTTTTGCATCTTCATCTTCTGCTTCAACTAATTCAGCC CCAATCCCAAACAACACCAACAAATTAGAAGCACCACCACTGCCGCCGTCGCAGCCGCAATTAACATCATCAACATCTTT TCCCTCATCATCATCATCACGTTCCCTTGAGGCCATTAAGTCTTGGAACAATGGAGGGTGGTTATTAAAAGCTAACAACA ATGAAGGAAATGGTGGCACTAATATTAATGACCTTGAGTCTCCTACCTCAACCCTATCTTTCTCTGAGAATAACAATGTG CAACCAATCATGACTGTTGGATCAGCAACAGAAAACAATAGCACTGCAGTGGCTATGATTGAGTTTGTGGGCACTAATTC AGGTTCTTCTGAGACAGGAGGAGGAGTTGTGAAAGAAGAAGGTGAGCAGTGGAAAGGTTATCATGAGAGTTCAATGACTT TCACTTCTGGATTTCATGAGTTCATGGAAGGTGTTGTTGGAGATGATGTTGTTGAAGAAGGGTTCACCAATCTTCTACTT AAAACAAACTCCGATGACTCGGAAGGCGGCGGAGAATCTAACAATGGTGGTCGTGGGAGTGGCAGTGATTTCTATGAAGC TGATAACAATAACTACTGGAGCAGCATTCTTAATTTAGTGAACTCTTCACCATCAGATTCTCCAATGTTCTGA
Protein sequence (LotjaGi2g1v0260600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGIDPVTHKPKNDALLSSDGQSKTAANLSHMAQWESARLEAEARLVRESKLRSHSLQNHHLGSSHHHVFASSSSASTNSA PIPNNTNKLEAPPLPPSQPQLTSSTSFPSSSSSRSLEAIKSWNNGGWLLKANNNEGNGGTNINDLESPTSTLSFSENNNV QPIMTVGSATENNSTAVAMIEFVGTNSGSSETGGGVVKEEGEQWKGYHESSMTFTSGFHEFMEGVVGDDVVEEGFTNLLL KTNSDDSEGGGESNNGGRGSGSDFYEADNNNYWSSILNLVNSSPSDSPMF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 207 | 207 | 1.7E-22 | – | |
MobiDBLite | 1 | 30 | 30 | - | – | |
PANTHER | 1 | 207 | 207 | 1.7E-22 | ||
MobiDBLite | 14 | 30 | 17 | - | – | |
MobiDBLite | 51 | 112 | 62 | - | – | |
MobiDBLite | 56 | 86 | 31 | - | – | |
MobiDBLite | 241 | 264 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0260600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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