Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PTHR10641
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 261 results. Now displaying 1 of 6 with 50 rows per page. This search has taken 0.086s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0020039.1
n.a. Myb domain protein 5 isoform 1 [Theobroma cacao] gi|508717011|gb|EOY08908.1| chr0 7982153 7983626 +
1 domain prediction
 –
Lj0g3v0042839.1
n.a. PREDICTED: transcription factor CPC [Vitis vinifera] gi|225444383|ref|XP_002267669.1| chr0 14076507 14077154 -
1 domain prediction
 –
Lj0g3v0042839.2
n.a. PREDICTED: transcription factor CPC-like [Glycine max] gi|356543732|ref|XP_003540314.1| chr0 14076507 14078119 -
1 domain prediction
 –
Lj0g3v0068589.1
n.a. Transcription factor [Medicago truncatula] gi|357453385|ref|XP_003596969.1| chr0 24584195 24586538 +
1 domain prediction
 –
Lj0g3v0080089.1
n.a. PREDICTED: transcription factor GAMYB-like [Glycine max] gi|356550909|ref|XP_003543825.1| chr0 31010352 31016791 -
1 domain prediction
 –
Lj0g3v0082879.1
n.a. PREDICTED: myb-related protein Myb4-like [Glycine max] gi|356533659|ref|XP_003535378.1| chr0 32643233 32644558 +
1 domain prediction
 –
Lj0g3v0082899.2
n.a. PREDICTED: cell division cycle 5-like protein-like [Glycine max] gi|356535202|ref|XP_003536137.1| chr0 32645944 32652191 +
1 domain prediction
 –
Lj0g3v0085519.1
n.a. PREDICTED: myb-like protein Q-like [Cicer arietinum] gi|502096160|ref|XP_004490644.1| chr0 34236187 34237669 +
1 domain prediction
 –
Lj0g3v0091669.1
n.a. PREDICTED: transcription factor MYB113-like [Glycine max] gi|356520958|ref|XP_003529126.1| chr0 37989245 37990707 +
1 domain prediction
 –
Lj0g3v0094629.1
n.a. tannin-related R2R3 MYB transcription factor, partial [Medicago truncatula] gi|387135354|gb|AFJ53058.1| chr0 39783254 39785228 -
1 domain prediction
 –
Lj0g3v0096579.1
n.a. PREDICTED: protein ODORANT1-like [Cicer arietinum] gi|502117524|ref|XP_004495851.1| chr0 40747877 40749905 -
1 domain prediction
 –
Lj0g3v0104249.1
n.a. PREDICTED: transcription factor MYB113-like [Glycine max] gi|356520958|ref|XP_003529126.1| chr0 44570927 44571400 +
1 domain prediction
 –
Lj0g3v0107919.1
n.a. PREDICTED: transcription factor MYB48-like [Cicer arietinum] gi|502082003|ref|XP_004487036.1| chr0 46569730 46570150 +
1 domain prediction
 –
Lj0g3v0107919.2
n.a. Myb-like transcription factor [Medicago truncatula] gi|357454091|ref|XP_003597326.1| chr0 46569733 46570150 +
1 domain prediction
 –
Lj0g3v0107919.3
n.a. MYB transcription factor MYB139 [Glycine max] gi|351722983|ref|NP_001235983.1| chr0 46569793 46570150 +
1 domain prediction
 –
Lj0g3v0115219.1
n.a. PREDICTED: transcriptional activator Myb-like [Glycine max] gi|356570355|ref|XP_003553355.1| chr0 50644913 50646550 +
1 domain prediction
 –
Lj0g3v0117159.1
n.a. PREDICTED: cyclin-D-binding Myb-like transcription factor 1-like [Glycine max] gi|356548105|ref|XP_003542444.1| chr0 51629699 51632511 +
1 domain prediction
 –
Lj0g3v0117159.2
n.a. PREDICTED: cyclin-D-binding Myb-like transcription factor 1-like [Glycine max] gi|356548105|ref|XP_003542444.1| chr0 51629699 51632511 +
1 domain prediction
 –
Lj0g3v0117159.3
n.a. PREDICTED: cyclin-D-binding Myb-like transcription factor 1-like [Glycine max] gi|356548105|ref|XP_003542444.1| chr0 51629699 51632511 +
1 domain prediction
 –
Lj0g3v0129839.1
n.a. PREDICTED: transcription factor MYB86-like [Glycine max] gi|356573440|ref|XP_003554868.1| chr0 58798995 58800821 +
1 domain prediction
 –
Lj0g3v0147679.1
n.a. MYB transcription factor MYB181 [Glycine max] gi|351726530|ref|NP_001235850.1| chr0 68290112 68293929 +
1 domain prediction
 –
Lj0g3v0165349.1
n.a. PREDICTED: myb-related protein 315-like [Glycine max] gi|356573735|ref|XP_003555012.1| chr0 78489100 78491024 +
1 domain prediction
 –
Lj0g3v0165839.1
n.a. MYB29 protein [Glycine max] gi|359807202|ref|NP_001241360.1| chr0 78743420 78747154 -
1 domain prediction
 –
Lj0g3v0166299.1
n.a. MYB transcription factor MYB185 [Glycine max] gi|377823737|ref|NP_001235820.1| chr0 79093217 79093748 -
1 domain prediction
 –
Lj0g3v0195029.1
n.a. PREDICTED: transcription factor WER-like [Vitis vinifera] gi|359491528|ref|XP_002279128.2| chr0 95118466 95119774 -
1 domain prediction
 –
Lj0g3v0195189.1
n.a. R2R3-MYB transcription factor [Lupinus albus] gi|318611380|dbj|BAJ61453.1| chr0 95228443 95229316 +
1 domain prediction
 –
Lj0g3v0203109.1
n.a. R2R3-MYB transcription factor [Medicago truncatula] gi|357444727|ref|XP_003592641.1| chr0 100638396 100638967 +
1 domain prediction
 –
Lj0g3v0214919.1
n.a. PREDICTED: transcriptional activator Myb-like [Cicer arietinum] gi|502137380|ref|XP_004503065.1| chr0 108898180 108899030 +
1 domain prediction
 –
Lj0g3v0232579.1
n.a. PREDICTED: protein ODORANT1-like [Glycine max] gi|356528637|ref|XP_003532906.1| chr0 120720420 120721964 +
1 domain prediction
 –
Lj0g3v0236339.1
n.a. PREDICTED: transcription factor RAX3-like isoform X2 [Cicer arietinum] gi|502125463|ref|XP_004498936.1| chr0 122476749 122478454 +
1 domain prediction
 –
Lj0g3v0236669.1
n.a. Myb-like protein A [Medicago truncatula] gi|357474921|ref|XP_003607746.1| chr0 122654362 122657235 +
1 domain prediction
 –
Lj0g3v0242109.1
n.a. PREDICTED: myb-related protein Myb4-like [Cicer arietinum] gi|502116333|ref|XP_004495379.1| chr0 125626049 125626410 -
1 domain prediction
 –
Lj0g3v0246909.1
n.a. Myb-like protein AA [Medicago truncatula] gi|357487099|ref|XP_003613837.1| chr0 127962770 127965247 -
1 domain prediction
 –
Lj0g3v0260369.1
n.a. Myb-like DNA-binding protein BAS1 [Medicago truncatula] gi|358347472|ref|XP_003637780.1| chr0 135252428 135261507 -
1 domain prediction
 –
Lj0g3v0260369.2
n.a. Myb-like DNA-binding protein BAS1 [Medicago truncatula] gi|358347472|ref|XP_003637780.1| chr0 135252428 135261507 -
1 domain prediction
 –
Lj0g3v0276369.1
n.a. PREDICTED: transcription factor MYB46-like [Glycine max] gi|356542046|ref|XP_003539482.1| chr0 143410257 143413481 -
1 domain prediction
 –
Lj0g3v0280579.1
n.a. MYB transcription factor MYB185 [Glycine max] gi|377823737|ref|NP_001235820.1| chr0 145500754 145501415 +
1 domain prediction
 –
Lj0g3v0281479.1
n.a. PREDICTED: transcription factor MYB21-like [Glycine max] gi|356534359|ref|XP_003535723.1| chr0 145912294 145912662 +
1 domain prediction
 –
Lj0g3v0298849.1
n.a. PREDICTED: transcription factor MYB104 [Vitis vinifera] gi|225449244|ref|XP_002276341.1| chr0 155317260 155321142 +
1 domain prediction
 –
Lj0g3v0300449.1
n.a. R2R3MYB transcription factor, partial [Lotus japonicus] gi|388330296|gb|AFK29426.1| chr0 156113367 156114867 -
1 domain prediction
 –
Lj0g3v0318769.1
n.a. PREDICTED: protein ODORANT1-like [Cicer arietinum] gi|502157248|ref|XP_004510807.1| chr0 166490886 166495012 +
1 domain prediction
 –
Lj0g3v0318779.1
n.a. n.a. chr0 166492682 166495012 -
1 domain prediction
 –
Lj0g3v0318789.1
n.a. PREDICTED: protein ODORANT1-like [Cicer arietinum] gi|502157248|ref|XP_004510807.1| chr0 166493573 166495012 +
1 domain prediction
 –
Lj0g3v0322209.1
n.a. PREDICTED: myb-related protein 330-like [Cicer arietinum] gi|502080311|ref|XP_004486524.1| chr0 168215070 168217315 -
1 domain prediction
 –
Lj0g3v0329239.1
n.a. Myb-like protein AA [Medicago truncatula] gi|357487099|ref|XP_003613837.1| chr0 172142906 172144664 -
1 domain prediction
 –
Lj0g3v0334719.1
n.a. PREDICTED: LOW QUALITY PROTEIN: myb-related protein 305-like [Glycine max] gi|356506922|ref|XP_003522222.1| chr0 175239051 175240130 -
1 domain prediction
 –
Lj0g3v0337739.1
n.a. PREDICTED: transcription factor LAF1-like [Glycine max] gi|356518595|ref|XP_003527964.1| chr0 176889769 176891288 +
1 domain prediction
 –
Lj0g3v0343019.1
n.a. MYB transcription factor MYB60 [Glycine max] gi|358248538|ref|NP_001240154.1| chr0 179830038 179831239 -
1 domain prediction
 –
Lj0g3v0343029.1
n.a. MYB transcription factor MYB53 [Glycine max] gi|110931810|gb|ABH02904.1| chr0 179831197 179831772 -
1 domain prediction
 –
Lj0g3v0349359.1
n.a. MYB domain class transcription factor [Malus domestica] gi|302398943|gb|ADL36766.1| chr0 183457204 183463118 +
1 domain prediction
 –