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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0262000 |
| Transcript ID | LotjaGi2g1v0262000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ethylene-responsive transcription factor; TAIR: AT5G19790.1 related to AP2 11; Swiss-Prot: sp|Q6J9S1|RA211_ARATH Ethylene-responsive transcription factor RAP2-11; TrEMBL-Plants: tr|K7LXI9|K7LXI9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0262000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:73045635..73047158) extracted from Lotus japonicus Gifu genome v1.2.
CAAAGCTTCAGTTCCATCCAAGATTCATCCTATAAGCTCTTAACCAAACCAAGCTTAAGTAGCTTCAAAGAATCACCCTA TAAGCTTGAAATGGCAAGGAAAAGAAAGGTTTCTGAAGTGGTGGATGAGAGAAACCTATCTGAGGGTACCATGGCCTGGG ATGAGATGTTAAAGCAAGCTGCAGAACTTGGAGGAGCAAGGAAAACCCGAAAGCGATTCGTTGGGGTGAGGCAAAGGCCA TCTGGTAGATGGGTTGCTGAGATAAAAGACACCATTCAGAAGATAAGAGTATGGTTGGGAACTTTTGACACAGCTGAAGA AGCTGCAAGAGCCTATGATGAGGCTGCTTGCTTGCTTCGCGGCGCGAATACAAGGACAAACTTCTGGCCTTGCTCCCAAT CTTCCTCAACTCCAGCACTTTCTTCAAAGATCACCAATCTCCTTCTCCAAAGGCTTAAAGAAAGAAACAACTCTTTCTCT TCTTCTTCCTCCATGTCTCTTCCTACCAACCTCCAACAAATGCAACAAGTAGATGCATATGGAGCAGGATCATCAACACA ATTTTCAATTGACCAATTCACTGATTTCCTCAATGATCCGGAACCAGAAGATTATAGCTCAAGCAACCACACTTTCACCA AAAACAGTGCTGAAATTGATTACATTGCTAGTGGTTTCGAGTCATGCTTAACTGAAAAGGATAGCTTCAAAGGGGTAGAA ATGGACATGGAATATAAATCCAGCAATGTGACACAAACTTCAAGCAATGACAGCAATTCAGGAGTGGAAAGAGAGGAAGA AAGTGAAGAAGAAAGTGTCCAAGGGACTAATTTGGATGTCCCAGATTTTCGATTTCTCGACACAGTTCCTCCACCAAGCT ACTACTCTCCCTTTGAGATTGCTGAAGGGATGGAGGAGCCAGCAGAGGAAGCAGAGAACTATGCTGATGAGCCTTCAATG CTTAGAGCTGTGATGAAGAGGATGAAATATGAGAGGAAATTCTCAGCTTCTCTCTATGCCTTCAACGGGATACCTGAGTG CTTGAAGTTCACACTAGAATCAGGGAACATGAAGGGGAAAGGACTAATGGCTGATCAATTAGCCAGCCTCCAAACAGCTT GCAGAAAAAGCAAACTTGAGAAGAAGAATGTGGAGGAGAAAGAGTACATGATGGCAGCAAGGGATAATGGGAAAGAGGAA GAAAACCATCATCAAACATCAATTTACATGGATTCCTCTTCTTCATCTAGTGTTGATGAAGAACTGTTGCTCTGGAATTC ACTTGATCTTTCTCCTATTTGCTTTGTTAACTTGCTGGAAAATGGTTCATTCAATTAGTAATATCATTCATTTCCTTAAC TATATGTATTATAATCTCAAAGCAATATATATTTTGTAACACCTAATTTGGTACTAATGAAATAATGTTTTCTTATTTCA TTCATTGTTCCTAGTATCAGTGTGTCTGTAATTTGGCTCAGTAGGTACTGAACCTGCACTGAAAGAGCTTTTCTTCATTC TAGT
CDS sequence (LotjaGi2g1v0262000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAAGGAAAAGAAAGGTTTCTGAAGTGGTGGATGAGAGAAACCTATCTGAGGGTACCATGGCCTGGGATGAGATGTT AAAGCAAGCTGCAGAACTTGGAGGAGCAAGGAAAACCCGAAAGCGATTCGTTGGGGTGAGGCAAAGGCCATCTGGTAGAT GGGTTGCTGAGATAAAAGACACCATTCAGAAGATAAGAGTATGGTTGGGAACTTTTGACACAGCTGAAGAAGCTGCAAGA GCCTATGATGAGGCTGCTTGCTTGCTTCGCGGCGCGAATACAAGGACAAACTTCTGGCCTTGCTCCCAATCTTCCTCAAC TCCAGCACTTTCTTCAAAGATCACCAATCTCCTTCTCCAAAGGCTTAAAGAAAGAAACAACTCTTTCTCTTCTTCTTCCT CCATGTCTCTTCCTACCAACCTCCAACAAATGCAACAAGTAGATGCATATGGAGCAGGATCATCAACACAATTTTCAATT GACCAATTCACTGATTTCCTCAATGATCCGGAACCAGAAGATTATAGCTCAAGCAACCACACTTTCACCAAAAACAGTGC TGAAATTGATTACATTGCTAGTGGTTTCGAGTCATGCTTAACTGAAAAGGATAGCTTCAAAGGGGTAGAAATGGACATGG AATATAAATCCAGCAATGTGACACAAACTTCAAGCAATGACAGCAATTCAGGAGTGGAAAGAGAGGAAGAAAGTGAAGAA GAAAGTGTCCAAGGGACTAATTTGGATGTCCCAGATTTTCGATTTCTCGACACAGTTCCTCCACCAAGCTACTACTCTCC CTTTGAGATTGCTGAAGGGATGGAGGAGCCAGCAGAGGAAGCAGAGAACTATGCTGATGAGCCTTCAATGCTTAGAGCTG TGATGAAGAGGATGAAATATGAGAGGAAATTCTCAGCTTCTCTCTATGCCTTCAACGGGATACCTGAGTGCTTGAAGTTC ACACTAGAATCAGGGAACATGAAGGGGAAAGGACTAATGGCTGATCAATTAGCCAGCCTCCAAACAGCTTGCAGAAAAAG CAAACTTGAGAAGAAGAATGTGGAGGAGAAAGAGTACATGATGGCAGCAAGGGATAATGGGAAAGAGGAAGAAAACCATC ATCAAACATCAATTTACATGGATTCCTCTTCTTCATCTAGTGTTGATGAAGAACTGTTGCTCTGGAATTCACTTGATCTT TCTCCTATTTGCTTTGTTAACTTGCTGGAAAATGGTTCATTCAATTAG
Protein sequence (LotjaGi2g1v0262000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MARKRKVSEVVDERNLSEGTMAWDEMLKQAAELGGARKTRKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAAR AYDEAACLLRGANTRTNFWPCSQSSSTPALSSKITNLLLQRLKERNNSFSSSSSMSLPTNLQQMQQVDAYGAGSSTQFSI DQFTDFLNDPEPEDYSSSNHTFTKNSAEIDYIASGFESCLTEKDSFKGVEMDMEYKSSNVTQTSSNDSNSGVEREEESEE ESVQGTNLDVPDFRFLDTVPPPSYYSPFEIAEGMEEPAEEAENYADEPSMLRAVMKRMKYERKFSASLYAFNGIPECLKF TLESGNMKGKGLMADQLASLQTACRKSKLEKKNVEEKEYMMAARDNGKEEENHHQTSIYMDSSSSSSVDEELLLWNSLDL SPICFVNLLENGSFN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 339 | 339 | 8.9E-124 | – | |
| PANTHER | 1 | 339 | 339 | 8.9E-124 | – | |
| Gene3D | 41 | 100 | 60 | 1.1E-26 | ||
| CDD | 41 | 98 | 58 | 1.90601E-32 | ||
| SUPERFAMILY | 42 | 99 | 58 | 4.05E-19 | ||
| Pfam | 42 | 91 | 50 | 1.7E-13 | ||
| ProSiteProfiles | 42 | 99 | 58 | 19.559 | ||
| SMART | 42 | 105 | 64 | 2.0E-35 | ||
| PRINTS | 43 | 54 | 12 | 6.1E-8 | ||
| PRINTS | 65 | 81 | 17 | 6.1E-8 | ||
| MobiDBLite | 217 | 247 | 31 | - | – | |
| Coils | 337 | 357 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi2g1v0262000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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