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LotjaGi2g1v0262700.1

Overview

Field Value
Gene ID LotjaGi2g1v0262700
Transcript ID LotjaGi2g1v0262700.1
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Chorismate mutase; TAIR: AT3G29200.1 chorismate mutase 1; Swiss-Prot: sp|P42738|CM1_ARATH Chorismate mutase 1, chloroplastic; TrEMBL-Plants: tr|I1LWP2|I1LWP2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0262700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:73149619..73154376) extracted from Lotus japonicus Gifu genome v1.2.

TCATATCTCAATGGAAAAACATGTGCATCAAAACAAAACAAAACAAATGTTAACCCATGTTTGGTGACACCCACCCTTTT TCTCCTGGTTGTGTTTTGTGGACTATCAGCCTCAGCTCCACCTAATACTCTTCTTCCTCACCTACACCTACCAACCACCA CGCCGTCAAGCCTCTATATTCATATGCTTCTTCTCCATTCCCCATTTTTCTTCAATCATCACAATTCACTTCCTCTCTCT TTTCAATGGAGGCTAAGCTTTTGAACACCACCTTCTCAGTGTCTCCAAGACCCTCCTGCGCTTTTGATCTCACAACTCGC AGAGCTTCTTTTCCCTTCCACCCCACTTCTGATTTTTTCCAAAAAAATAATCTTTCTGTTCGTACACATGCGGCTTCAAT AGGGTGAGCATAGTTTTATTTTCGATTCTGGGGTTCTCATAGAATCAATTTTTCATCCAAAAAGATTGAATTTTTGGCCT TTCTGATTTGGTTCTCAAATTTGATACTTGATGTCTGGTTTTTGTTTTTATGGTTTGGAATACATGCAGTTGTGAAGTGT TTGTTGATTGAATCAATTACCATTTTGTATTGCTCTTTTATGTTCTTCCCCTTTAAGGTAGAGTCCTTGGAAATTGGTAG GTCAGCAAAGAGGAAAGTGACCATGCAACTCTGTTTGGTATTATGTATACATGATCAGTAATGTTAACAAAGTTGGTCTA TCTTTGCTTTATTTTGATGCCATATTGATCAACATTAAATCCAAACACAATGCATTACTTTTGGATGAACAAGAGACTCT TATCAGGCTTGTTTCTTTAGTTGTTTATACTGTTCCTGGTGTACATGCCTGTTTTTTTGTTGATAATCGGGTCTCTTCAC TCTAGAGATAGTACTTGATTGATATATATTCGATACTAGGGGTACCAATTCGTAATAGCTCATTGCAGGATATTCTGACT TTTAACTTCAATCAAATTTCACACTCATGCTGTCAGCTTTGGATGTACAGTTTCATGTTCTTGTATTGCATCCTTAAATC TACAAGTGCCAAATATTTGTTTATATGAAAGACATTATCTTGTTTGCTTTCTATATTGGTCAATCAAATATTAAGGTTAC CCTATTTCTGTCCTGTAGATCAGTGCCAACAAAGGAAAGGGTTGATGAGAGTGAAAACTTGACCCTTGATCATATAAGGC ATTCTTTAATTCGTCAAGAGGATAGCATAATCTTTAGCCTATTGGAGCGAGCACAATACTGTTACAATGAAGATACTTAT GACCCTAATGCCTTCTCCATGGATGGATTTCATGGCTCATTAGTAGAATACATGGTCAGGGAAACTGAGACGCTTCATGC TAAGGTATGGACCTAAGCCTGGAAAGCAAAGATTACACATAAATTTTATATAAAAAAAAAGATAAAGTGAAAGTACTAAG TTCTAATATATAGATGTCAATTTTTCTGATTGGATTTCCATTACACTGAAGGTTGGTAGATACAAGAGCCCTGATGAGCA TCCATTCTTTCCTGATGGCTTACCTGAACCATTGTTACCGCCTTTGCAATACCCTCAGGTAAATAATATTCCTCAACAAT CATCAAGGGTGTTCCCTTAGGATTTTGTTTTGCCAGTAAATTTTTTATATTCACACAGATAGAACTATGCTTTCAGTCAT TATTTAGGAGTTTATAACATGGGAAGAGGTTAAGGAGTTCCTATCCATAAAATTAGTAGTGACACTAGCTATGTGGATGT AAAGATAACTTGTCTACTCTCTCTGTTCACTTATTTTAAAAACTGAATGGAAACTGGCTTAAACATTATACTATGTAAAA AGATGAATATTTAACATAAAATTCCTCAGAAGTAGGAAGCGGGTGCAGGATGTGATCCTTTCTGATTAATTTGAAATGAT AGTTTTCCCTTTTCAATTATAGTGAAAAGAAAACAGCATGGTTACATGAAAAGGAAAAAATGGATTCCAAGTAGGGATAC ACTCATTCTATGAATGTATAGGTCATTAGACCATTTCAACACAAAACACACATATAAAGTAATAATTACAGTATTCAAAA AGGAGAAAGCAAAATCAGTCTGCGACTCTGCGTGTCAATTCAAAAATTACAGCTTAATTCTTCACCAAGTTTGTCCTATC AATCATATAATTTTTCTGTTGCGTATGCACATAATATTAGTTTACACACTCAATTGAATGCCACATTGTATACCTACTAG AATTCTTCCATCATGAGCTCTCTCTGTTACATAAACGGTTGTGCTGCTAAGTCATTTCTGTGCTAATTGCTTCTTCACAG ACTTTCTATGTAATGTATGAATTGGTCCTGTACTAATTGTTTCATCACTGAATTCTGTGTAATATCTGAATAGGTATTGC ACCCTATTGCTGAGTCAATTAATATAAATGTTAAAGTGTGGGATTTATACTTCAGAGTCCTTATCCCACAACTAGTCAAG GAAGGAGATGATGGTAATTCTGGATCTTCTTCTTTGTGTGATGTAATGTGCTTGCAGGTACACTCTACTAGTTTCCTTTA GTTAAAATTTCATCTGTCAGTTGAAATGATTTTCGGGCTTTTTTTACCTTGCATTTTCAATTGTTAAACTCGCTCATTTT TAAGTGATCTCAAAGCATGTAGTGTTACTGTGTATACATATGAATATATCCATGTCCTCATTTCATGTCCTCTTTGGTGT TTAATTTCTTACATGTATTAAGAATTTAAGATCGATTTGTTTGATATTGCTTAAAACAGTTGCAAAACAATATTTCACTT TGATGCTGAATAATAACAGCTGATTCTTCTTTAAAACAGGATTTTGTTAATGGGTTTTTTGTTTTTTTTTAAAGAAACTA AAACATGTACTATCTGGTGACAAATCTCTCGTCCTTCCTGCATAACATCTTCCCAATCTATGGAGCGTTTGGAGCTGGTT TGCTCTCCTACCAATGTACTCTTGCTTAGGTTCATCTCATGCTCTGCAACACGGACAGGCCTTGTGCAGTGATAAAAAAA AAAATTTAAAGTGATTGGTTTTCATTTTCATAGAAAATCAGTTATATATACCCCCTCCCCCCCCCCCCCCCCCCAAAAAA AAAGGCAACAGAAAGCTGATACCCATTACTGATATAAGCCTATTGCCTAATATGAACATGAGCTAGGGTTTATACATATT ACTGCAGCTTGCAAGTTTGGCATGCCTTCTTTTCAAAAGGATTCTCTCCCTCTAAGTAGAGATTTGTAATTGCAAATTCT GGTTCATAACTTCTTATATTACTGTAAACTCATGATTTCTTGTGACTACAGGCGCTATCAAAGAGGATCCATTATGGCAA ATTTGTTGCTGAGGCAAAATTTCGAGCTTCTCCGAATGACTACAAAGCTGCCATTATTGCACAGGTAAAAATAATACTTG CTAGAGGGGCTAGACTTCGATACAATTCTTGTTCTTTTTTACTTTCTTGGAGGTTCAACATTAACAATGGTAAATCAACT AATTGCTTTTGGTCATGGATGTATTTGGTTTGTGATTAACAGTACTGATTCTGACGGACATGGTTACTAGTTTGAGTTTG TAACCATAGTATATTGCAAAGGGACACTTCCAGCTTTTATTTTCATTTTTCTGCAACCTAGATTTTTCATCTCATCTTTG TATTGTCAACCTTTAATAGTACTGTTTTTGATGGACATGCTTACTAGTTTGAGTTTGCAAACCATTGTATGTTGCAAAGG GACACTCTCAGTTTTTATTTTCATTTTTCTGCAAGCTATTCATATCATCAACTATGTCTTGTTGACATGACTTTGCAGGA CAAGGATAAGTTGATGGACCTGTTAACATATCCTGAAGTTGAAGAGGCAATTAAAAGGAGAGTAGAGATGAAGGCAAAGA CTTATGGGCAAGAAGTGGTTGTAAATATGAAGGAACATCGTACTGAGCCAGTGTACAAAATTAATCCAAGCTTGGTTGCT GATCTATATAGTGATTGGATTATGCCATTGACAAAGGAAGTTCAAGTTGCATATTTATTAAGGAAGCTGGACTGAACATT ATGGGTACCTTTTCAATTACAATGTTCATATTATGACATTTATTTTCCAAATAAAATGATATTTGCAATGAATGTCTCTG AAGTACATGATGGGTGTCTTTCTTTGAAATTTGGATTGTGTCTATAAATTCTTGCTTTTGTAATTAGCATGAGGGTCAAC ATATTGTGCTCTTATATAGTAGTTCATGACATATTTTTTTATATTCTGTTGTTGTTTTCATTGTGACTTTCATGATTCAC TATTAAAAGTAAAAGGAAGTGAACAATGAAGGGTTAGATGCTTCAAGTTTCAACATTTTTCTGGAGAAGAAAACTCAGTT TGTCAGTGTTTGGTTGTTTGGAAAAGGAGAGAAGGCAGTGATGACCATGTTTGGTGATTTTGAACTCAACCCAGAAACTG TTTTGCTTGTTCTTTAAAAAATGTTGTCATCAAGTCCTGATGTGGTAGTATGGTCCAACTGATAGCGAGGAATACTTGCG TGAGATATTCTTAGATAGGCGCACCCTGAAATTAGGCCAAGTTTGGAAGAGCTTATTTGAGCTTATCTGACAGCATAAGC TCTTATGCCAGTGTTTGGGAGAGCTTATGCAAACAGCTTATGGTCTGCCATAAGCTATTTTCAGCTTATTTTCATAAGCT ACTCAGGATAGCTTATGAAAAACAGCTTATGCTTATAC
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0262700.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGGCTAAGCTTTTGAACACCACCTTCTCAGTGTCTCCAAGACCCTCCTGCGCTTTTGATCTCACAACTCGCAGAGC TTCTTTTCCCTTCCACCCCACTTCTGATTTTTTCCAAAAAAATAATCTTTCTGTTCGTACACATGCGGCTTCAATAGGAT CAGTGCCAACAAAGGAAAGGGTTGATGAGAGTGAAAACTTGACCCTTGATCATATAAGGCATTCTTTAATTCGTCAAGAG GATAGCATAATCTTTAGCCTATTGGAGCGAGCACAATACTGTTACAATGAAGATACTTATGACCCTAATGCCTTCTCCAT GGATGGATTTCATGGCTCATTAGTAGAATACATGGTCAGGGAAACTGAGACGCTTCATGCTAAGGTTGGTAGATACAAGA GCCCTGATGAGCATCCATTCTTTCCTGATGGCTTACCTGAACCATTGTTACCGCCTTTGCAATACCCTCAGGTATTGCAC CCTATTGCTGAGTCAATTAATATAAATGTTAAAGTGTGGGATTTATACTTCAGAGTCCTTATCCCACAACTAGTCAAGGA AGGAGATGATGGTAATTCTGGATCTTCTTCTTTGTGTGATGTAATGTGCTTGCAGGCGCTATCAAAGAGGATCCATTATG GCAAATTTGTTGCTGAGGCAAAATTTCGAGCTTCTCCGAATGACTACAAAGCTGCCATTATTGCACAGGACAAGGATAAG TTGATGGACCTGTTAACATATCCTGAAGTTGAAGAGGCAATTAAAAGGAGAGTAGAGATGAAGGCAAAGACTTATGGGCA AGAAGTGGTTGTAAATATGAAGGAACATCGTACTGAGCCAGTGTACAAAATTAATCCAAGCTTGGTTGCTGATCTATATA GTGATTGGATTATGCCATTGACAAAGGAAGTTCAAGTTGCATATTTATTAAGGAAGCTGGACTGA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0262700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEAKLLNTTFSVSPRPSCAFDLTTRRASFPFHPTSDFFQKNNLSVRTHAASIGSVPTKERVDESENLTLDHIRHSLIRQE DSIIFSLLERAQYCYNEDTYDPNAFSMDGFHGSLVEYMVRETETLHAKVGRYKSPDEHPFFPDGLPEPLLPPLQYPQVLH PIAESININVKVWDLYFRVLIPQLVKEGDDGNSGSSSLCDVMCLQALSKRIHYGKFVAEAKFRASPNDYKAAIIAQDKDK LMDLLTYPEVEEAIKRRVEMKAKTYGQEVVVNMKEHRTEPVYKINPSLVADLYSDWIMPLTKEVQVAYLLRKLD
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR21145:SF3
34 314 281 2.9E-151 –
PANTHER
PTHR21145
34 314 281 2.9E-151
IPR008238
PIRSF
PIRSF017318
55 314 260 7.0E-125
IPR008238
SUPERFAMILY
SSF48600
59 314 256 1.19E-102
IPR036263
ProSiteProfiles
PS51169
60 314 255 93.671
IPR008238
Gene3D
G3DSA:1.10.590.10
60 314 255 1.0E-114
IPR037039
TIGRFAM
TIGR01802
67 314 248 6.8E-107
IPR008238

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004106
Molecular function Chorismate mutase activity Catalysis of the reaction: chorismate = prephenate.
Subterm of
GO:0009073
Biological process Aromatic amino acid family biosynthetic process The chemical reactions and pathways resulting in the formation of aromatic amino acid family, amino acids with aromatic ring (phenylalanine, tyrosine, tryptophan).
Subterm of
GO:0046417
Biological process Chorismate metabolic process The chemical reactions and pathways involving chorismate, the anion of (3R-trans)-3-((1-carboxyethenyl)oxy)-4-hydroxy-1,5-cyclohexadiene-1-carboxylic acid.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0262700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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