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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0266800 |
| Transcript ID | LotjaGi2g1v0266800.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | TCP family transcription factor; TAIR: AT3G02150.2 plastid transcription factor 1; Swiss-Prot: sp|Q9S7W5|TCP13_ARATH Transcription factor TCP13; TrEMBL-Plants: tr|A0A151R2M5|A0A151R2M5_CAJCA Transcription factor TCP13; Found in the gene: LotjaGi2g1v0266800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:73652593..73655232) extracted from Lotus japonicus Gifu genome v1.2.
GTAATATCTCACGTGGCCTACTATGTGCCATTCCTTTATCTTTCAGTGCGGCGTGGTCGGTTCCATTCCGGCATCTTCCT CCTTTTCCAAGCTAGCTGCGGACTCAACTTAATTCTCTTCACCAAATTTATTCTATGCCAATAATCAAATCAAACCAAAG CCAAGTTTGGAACCTTCATATATAGTTCTTCTATCCTTGGCGTCAAAAGCAAGGTGCGCACTAGCTCCTTCTCTCAAAAC AGTGGTAGTAGGTAATTCATTCGCCTTTTTTGCTAGATATATATTATATATTTTTTCATCTACATCTAGGGTTTGTATTA GCCTCTTCTCAATTATACATGTTTGCCATGCGAAACTTGTTCCAATACTTTATGTTTTCCACAACTATAGTACTCCTAAA CTCCTAATTGCACGTACCCCATTAATTCCTTTACTTTGCTATATGCGTTTCTTTCACTGAAACCATATATATCTTGCTGC GAACATTTTCATATATAGATCAATATGGTATGAGATATATGCTTTTTCCGATGATTGCAGAGTTACTATGAATTGTTTTT GTTGTATATTTTCTTGGCTTTTTGTTGTTGTTCTAGCTCATCTCAAAGTCACAATTGAATGTGATGCTGCTAGCTAGCAA GAAATCTCCTTGTTATCATTTTGTTGAAATTTATGTATGCATCTAATTTTAAGGAGTTGGAACTTAGTTCATTTATTTAT TTTTAAGAATAAATTAACCCCCTAGCTATTATTTAAAGTGAGAGTTTAATTCTTCATTTTTAAAGAAAACAAGAGAAATT TGAACTATTAGTTAGATAAAAAAAAACTATGAATTATATATAATACACTTTGACATTCTTATAATAAGACCTCAGATCCT TTACTTTTTCTTCCAAAGTAAACCTATTATTTAGATAAGTCAAACTCATGTTATCAGGAAAAATTTGATGAGTTAACATC ATAATCCTTTTTGAACATAGGTCAATCGGTTTTGTTAATGAAATTTTTTAGTAGCTAGAGTGTTGGAGTGTTTTTTAATT TTTTTTGAGAGGGTTGTTCTCAGAAATGTTCTCATGAATAATATCGATCAATATGTTTTTAGAATTTTTTTTTCTCAAAG AAACAGTTTTTTCTATCCATTTTGTATTATTTTTCTCAATATGGATTTCATGGTTTTCTGAAGCAGATACTAGGAGCAAC AACCATAAATTTCATTGTTGAAGGTGCAACATTCTACAATGGAAAACCAGCAATAATGACAGAAACTATATTTAAGATGA ATAAACGCGGTCCAACAGAAGCTGCAGATTTTCCATTAAAACAGGAAGGCCTTTCAAGTCATGATGATGATAAGGTCGCA AAGGCTTCAGCAGCGAGCTCATCAGCATCCTCACAATGGCTGAAGTTGAAGGATCCAAGGATTGTGAGAGTGTCTCGCGC CTTCGGAGGGAAAGACAGGCACAGCAAGGTGTGCACAATAAGAGGACTGAGAGACAGGAGAGTGAGACTATCAGTCCCCA CTGCCATTCTCCTCTATGATCTCCAAGATAGGCTTGGACTCAACCAACCAAGCAAAGTTGTTGATTGGTTGCTCAATGCA GCTAAGCATGAAATTGATGAACTCCCACCTTTGCCTATTCCCCCAGGAAACATCACCCTTGGTTATCCATCTCTTGTTAG CCCAAATACAACTCTCTGGAAATCAAAGCCTAAAGAAGTAGTGGTTACTGAAAAAGACAATTGGGTAAGTAGAAATGAAG ATGAGGATGTTAAACAAGGAAGCAATGAAGATGTTTTGCCAAACAATGTATTTCCAATTAGAGCAAATCATCCATCATTT CTTGGCTTGCTGAATACTGTTCATCCACTTGGTTATAATCAGTTTGAGCCTTCAGCTAATGTTGGTCATTTGGCAAACCT TGGATTTGTAAACCAAGGAGATATACCCAGCAATATTAATGCTGTGACTTTCCCTTCAACATTGACTTTATCAACTCAGC CATATTTTCCTTCACATGTGGGAGCAATGGAGATGGATCCAAGACAAATCAACCACTATCAAATGTTGAGTTCAAGTTCT CAGAATTTAACCATTTGTGATGATCTTCATTCATCTCAGCATCTCATGAGCCAATCTGGGAAACCATTCAGCTTTGTTGG GAAGTTCAACTTCAAGCAGAATTAGCTACAAAAGTTACTCTTACAACATTCTTCTCCTCTTACAAACATGTGGATGGATC ATGATCATGACAGTGAGAAGTTCATTTTAGTTATCGGTTTGGAGAATCATTTTGCTTTCGTTAAATTAGATATGTTTTGA TTGTATGATTTTCCAGTTTTATAGGTAAGAAGACTTAAACTTCTCCATTAGTTTCATCTATATGGTTTGTAAAGGTCTAC AAATAACAAAGAATGATTTTTTTTCATGGGGAAGAGATTTCCTGAAGTGATAAAGAATTGTTCCACTAAAGAGAAAGCAT GCTTATATAAGTTTAATTACTAGTCTCTCTTGTACGTTGAGAAAGGTCAGAAGTTGGAATTAAGATTTTTCATTTTCTAG GGTGTATACAACATGCTCAGATAGCTTATTAATCAACGTAAGTATTTTGTTGTGTATTAAGAACATGGATATGAATACAG
CDS sequence (LotjaGi2g1v0266800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACAGAAACTATATTTAAGATGAATAAACGCGGTCCAACAGAAGCTGCAGATTTTCCATTAAAACAGGAAGGCCTTTC AAGTCATGATGATGATAAGGTCGCAAAGGCTTCAGCAGCGAGCTCATCAGCATCCTCACAATGGCTGAAGTTGAAGGATC CAAGGATTGTGAGAGTGTCTCGCGCCTTCGGAGGGAAAGACAGGCACAGCAAGGTGTGCACAATAAGAGGACTGAGAGAC AGGAGAGTGAGACTATCAGTCCCCACTGCCATTCTCCTCTATGATCTCCAAGATAGGCTTGGACTCAACCAACCAAGCAA AGTTGTTGATTGGTTGCTCAATGCAGCTAAGCATGAAATTGATGAACTCCCACCTTTGCCTATTCCCCCAGGAAACATCA CCCTTGGTTATCCATCTCTTGTTAGCCCAAATACAACTCTCTGGAAATCAAAGCCTAAAGAAGTAGTGGTTACTGAAAAA GACAATTGGGTAAGTAGAAATGAAGATGAGGATGTTAAACAAGGAAGCAATGAAGATGTTTTGCCAAACAATGTATTTCC AATTAGAGCAAATCATCCATCATTTCTTGGCTTGCTGAATACTGTTCATCCACTTGGTTATAATCAGTTTGAGCCTTCAG CTAATGTTGGTCATTTGGCAAACCTTGGATTTGTAAACCAAGGAGATATACCCAGCAATATTAATGCTGTGACTTTCCCT TCAACATTGACTTTATCAACTCAGCCATATTTTCCTTCACATGTGGGAGCAATGGAGATGGATCCAAGACAAATCAACCA CTATCAAATGTTGAGTTCAAGTTCTCAGAATTTAACCATTTGTGATGATCTTCATTCATCTCAGCATCTCATGAGCCAAT CTGGGAAACCATTCAGCTTTGTTGGGAAGTTCAACTTCAAGCAGAATTAG
Protein sequence (LotjaGi2g1v0266800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTETIFKMNKRGPTEAADFPLKQEGLSSHDDDKVAKASAASSSASSQWLKLKDPRIVRVSRAFGGKDRHSKVCTIRGLRD RRVRLSVPTAILLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLPIPPGNITLGYPSLVSPNTTLWKSKPKEVVVTEK DNWVSRNEDEDVKQGSNEDVLPNNVFPIRANHPSFLGLLNTVHPLGYNQFEPSANVGHLANLGFVNQGDIPSNINAVTFP STLTLSTQPYFPSHVGAMEMDPRQINHYQMLSSSSQNLTICDDLHSSQHLMSQSGKPFSFVGKFNFKQN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 40 | 40 | - | – | |
| PANTHER | 9 | 279 | 271 | 1.2E-75 | – | |
| PANTHER | 9 | 279 | 271 | 1.2E-75 | ||
| ProSiteProfiles | 65 | 123 | 59 | 30.4 | ||
| Pfam | 65 | 126 | 62 | 7.8E-26 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. |
Expression pattern of LotjaGi2g1v0266800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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