Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0266800 |
| Transcript ID | LotjaGi2g1v0266800.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | TCP family transcription factor; TAIR: AT3G02150.2 plastid transcription factor 1; Swiss-Prot: sp|Q9S7W5|TCP13_ARATH Transcription factor TCP13; TrEMBL-Plants: tr|A0A151R2M5|A0A151R2M5_CAJCA Transcription factor TCP13; Found in the gene: LotjaGi2g1v0266800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:73652593..73658425) extracted from Lotus japonicus Gifu genome v1.2.
GTCAAAATTATCTTTCTTGAAGTGTTTTCAGTAACACGTATGAATTAACTACTTTTAGCCAGAACTTAACAAAAGGATGA GAAAATACAGTCTTTAGACACTACTGCCGCGCTTCTTGTCCTGAAGCTTCTGCTTCTGCTAACTGATGCATTCTGGGTAT TCAGAAAGGTGAGAGCGATGAGTCATATTAAAGCTCTGAGCAAGGGGTTTTATCATGAGTCTGTGGACCATTTATTGGAC CATAATTGTACTCTTTTCAGTACTGACCCAGTTGTCAGAAGTCAGAACTTTCTTGAGATACTCGTCACTGCTTGTTCTTA ACATCCAATTAAGCCCTATTCATGAATTTTTCCTTGAGATTTTTAATTCTTTGTCTCTTTGTGAAGAAAGATAAATAGCA CTGGAAGTCTGGTTTAATTTCTCTGGAAGCATGCAGCATCTCCAACAGTTAAAAAGAATATAATCTTTTGCTTTCTCCTT TCAGAAAAAAGCAGGAGGCAAACTTTGGTTTTTATTTCTCTTACTTCATCTTCATAGTTCATTCTCCTGCTTATATTCTT TCTCATATATACTTTTTATATATATATGTTTTGTTTGGTGTTAACCAAGTAATAGGGTGTATTGCAGACACTGGATATGG CCTGCTTTTACTCACTTCCCTATATGTCACTGCATTGCACTTTATCTATTTCTTGAATTTCTATCATGATTCATTAAAAT AAGGTTATATCAATATTGATGAACTTTTCCATTTACTCATGCTTTTTTCCTTCTTGTTTTGAAATATGCTTTTATTCAAC TACTAGCTTGGAGTGATGAAATTTCAAGTTTCTGTTAGTATCTAGATATATTACTTGTTGTTTGAAGTTTTATGTTAATC TGCCGGTGCATCCAATTCTTACAGATATGAACAGACATAGACAAGGATGTGTTTTAGGTTTTTCATGTCATGCACTATTT GTGTGAAATGGATTATTGGAAGCAATAAAATTAGTTATAGTTTGCTTTTTATGCAACATTAAACAAAATCACTGGAATAT AGTTCCTTAATACTAAACAAACCAGCAAAAGGAATATTGTATCTTTTGGAATATTAATTAGTCCATACTCCAAACATGAA CACAATCACTGGATCATGTCAGTAGCACCAAAATTATGTAAACATGAACCTGTTTGAAATTTTGGCTATTCTATATAAAA CTACTACAGTGAGCTTGATTAAGTTTTCTATATTATTAACATGAAGAGCTAATCAGTCATGATCAGTTTTCTTTGAATAT TATGTTTTCAGGGCTTGACCATTTTCTAGGTGAATCAACGTTAAATAGTGAAGGAAGTTTTTAATAGTAATTTTCTTCAG TTTTGTGGGTGAAGTTTTAGGGTTTTAAAGTTGGTATCTATCCACATCCAGCTCTCCCTGATGATGAAGCTAGCAATCAA TTAATGGAGGCTAAACACATTTCCAAATCCTCTTTGCCAAATGAAGAAGAGAAGAAATAATCTTGCGTACGTTTCTTATC TTAATACATTATTGACTTTTCTTTTGAATTAGAAAGCATGCGCTTATATTATATAATCCAATTGTGGTCTCAGATGTGTG TATTACATAGCTCCTCATCAGATAAAATCTCACAACTTGCCCCCATGCAATGGAATTGTGTGGTCCTAATTAATCCTATA TAAGGGACTACTGTTGCAAAAAGATAACATGTATATTTTGGTCCCTCACCCATACATGCGTAGATTTGCTTTTGAATTTT GATACATTCATACATATTTTCTTTTATTTTTTATCCAATTTTCACATTTTCCCTTAAGTGTGGAAAGAATATTAAATGAA TTGATTTTTATCGTTACATTATATACATGTTTAGATATACGGTAAAAAATAATTATAAAGTCAAAATAGTCATTTTATAC TTATAAAACTTAAGGAAAACTGCTTCACTCCCAGGCCCTCGTCATTTTTGCTTACTCAAAATTTTCACCGACTATCCAAA TTTGTGTGGTATTGTTCGTCACTTTGGCCCGTTTTTTTTGCTCTAAAAACTAGAAAAAAATTAAATACCTCTATTTCTTT GTAATTTTGACTTATCGTAATTTTTCAGCATCCATCTAAAATGCATGATATTGTTTGAAGTTGTTATCTTACCCAAAGGC ATGTCAGTACTTGGAACTAGACACCTCAACTTTTGAATCTCACTAAATGACTTATCCAAAGTGAATTTCTCTGTTTCCTC ACCATGTGATGCATGCCTCCCTAGTTATGTTGTTGTTTTCTACGCCTCATTCCCCTTTTATGATCTTTTCTTTTCTTTTA TTTTTTCATTGTGTTATTCCAAGTCTTATTCCTAAGAGTAAAGTATGTAGGTGAGGAGTTATATGTGTGAAAGGTATTAT TTTCCTAATCTAGAATTAAGAAGTTTAGCTTACCAAATAAATGAAAAAAATGTGAACCTAGCTAGGAAGCCTGATGCTCT TATAATGTTACGTTAATTTCTTAATTTTTTTTTATTGATTAATGGTCTAATGCTTATGTTATGCCCTTTCTTCCAAAGTT TTTCGAGCCTGTTCATGAACCGGCCAAAATCTCTTGCAATTTTGAATTCACTTTTACTTTTATTAGAATAACAACTTGGA TTTGGATCCTCTCCAACTGCTGGAGGGTCCAGCAAAGTATACCACCATTAAAAAAATTTAGTGTTTAAATTACTTTTTCA CCCTCAACACATTTCAAACATTAATTATTTTGATCTATGGCTATAAATGAGCCGTAGAGGCTGGACAGGATTTTGGGCTC GAGAGGATCCCGAATCACCCATAAAACCTATTCATTATAGCTTTTTGCTAACACTATATTTCCCCCACACAATTTTTTTT TACAGAGTTTTTTAAACATGCTTATAAATTATTTCACGCACCTTGCCATAAATAGAAAGCAGGCAGTAATTTAGGTGGCT TTGATCTTAATGAAGACATTATTTTCCTTGACAAGGGCAAAGGCAAACATGTACCAATGACAACATATACCAAAAAATAT CAGCACTAAGACCTTCTAGTGAACTGTTTTTTTTTTTCTTTTTTGGATAAATCATCTAGTGAACTGGTATCATCAAAGAA ATCATTGTCAATCATGCCACCATGCCATAAAATGATAAGATATGTAGACTGCCAAATTTATTTGACCAATAGGGTAATAT CTCACGTGGCCTACTATGTGCCATTCCTTTATCTTTCAGTGCGGCGTGGTCGGTTCCATTCCGGCATCTTCCTCCTTTTC CAAGCTAGCTGCGGACTCAACTTAATTCTCTTCACCAAATTTATTCTATGCCAATAATCAAATCAAACCAAAGCCAAGTT TGGAACCTTCATATATAGTTCTTCTATCCTTGGCGTCAAAAGCAAGGTGCGCACTAGCTCCTTCTCTCAAAACAGTGGTA GTAGGTAATTCATTCGCCTTTTTTGCTAGATATATATTATATATTTTTTCATCTACATCTAGGGTTTGTATTAGCCTCTT CTCAATTATACATGTTTGCCATGCGAAACTTGTTCCAATACTTTATGTTTTCCACAACTATAGTACTCCTAAACTCCTAA TTGCACGTACCCCATTAATTCCTTTACTTTGCTATATGCGTTTCTTTCACTGAAACCATATATATCTTGCTGCGAACATT TTCATATATAGATCAATATGGTATGAGATATATGCTTTTTCCGATGATTGCAGAGTTACTATGAATTGTTTTTGTTGTAT ATTTTCTTGGCTTTTTGTTGTTGTTCTAGCTCATCTCAAAGTCACAATTGAATGTGATGCTGCTAGCTAGCAAGAAATCT CCTTGTTATCATTTTGTTGAAATTTATGTATGCATCTAATTTTAAGGAGTTGGAACTTAGTTCATTTATTTATTTTTAAG AATAAATTAACCCCCTAGCTATTATTTAAAGTGAGAGTTTAATTCTTCATTTTTAAAGAAAACAAGAGAAATTTGAACTA TTAGTTAGATAAAAAAAAACTATGAATTATATATAATACACTTTGACATTCTTATAATAAGACCTCAGATCCTTTACTTT TTCTTCCAAAGTAAACCTATTATTTAGATAAGTCAAACTCATGTTATCAGGAAAAATTTGATGAGTTAACATCATAATCC TTTTTGAACATAGGTCAATCGGTTTTGTTAATGAAATTTTTTAGTAGCTAGAGTGTTGGAGTGTTTTTTAATTTTTTTTG AGAGGGTTGTTCTCAGAAATGTTCTCATGAATAATATCGATCAATATGTTTTTAGAATTTTTTTTTCTCAAAGAAACAGT TTTTTCTATCCATTTTGTATTATTTTTCTCAATATGGATTTCATGGTTTTCTGAAGCAGATACTAGGAGCAACAACCATA AATTTCATTGTTGAAGGTGCAACATTCTACAATGGAAAACCAGCAATAATGACAGAAACTATATTTAAGATGAATAAACG CGGTCCAACAGAAGCTGCAGATTTTCCATTAAAACAGGAAGGCCTTTCAAGTCATGATGATGATAAGGTCGCAAAGGCTT CAGCAGCGAGCTCATCAGCATCCTCACAATGGCTGAAGTTGAAGGATCCAAGGATTGTGAGAGTGTCTCGCGCCTTCGGA GGGAAAGACAGGCACAGCAAGGTGTGCACAATAAGAGGACTGAGAGACAGGAGAGTGAGACTATCAGTCCCCACTGCCAT TCTCCTCTATGATCTCCAAGATAGGCTTGGACTCAACCAACCAAGCAAAGTTGTTGATTGGTTGCTCAATGCAGCTAAGC ATGAAATTGATGAACTCCCACCTTTGCCTATTCCCCCAGGAAACATCACCCTTGGTTATCCATCTCTTGTTAGCCCAAAT ACAACTCTCTGGAAATCAAAGCCTAAAGAAGTAGTGGTTACTGAAAAAGACAATTGGGTAAGTAGAAATGAAGATGAGGA TGTTAAACAAGGAAGCAATGAAGATGTTTTGCCAAACAATGTATTTCCAATTAGAGCAAATCATCCATCATTTCTTGGCT TGCTGAATACTGTTCATCCACTTGGTTATAATCAGTTTGAGCCTTCAGCTAATGTTGGTCATTTGGCAAACCTTGGATTT GTAAACCAAGGAGATATACCCAGCAATATTAATGCTGTGACTTTCCCTTCAACATTGACTTTATCAACTCAGCCATATTT TCCTTCACATGTGGGAGCAATGGAGATGGATCCAAGACAAATCAACCACTATCAAATGTTGAGTTCAAGTTCTCAGAATT TAACCATTTGTGATGATCTTCATTCATCTCAGCATCTCATGAGCCAATCTGGGAAACCATTCAGCTTTGTTGGGAAGTTC AACTTCAAGCAGAATTAGCTACAAAAGTTACTCTTACAACATTCTTCTCCTCTTACAAACATGTGGATGGATCATGATCA TGACAGTGAGAAGTTCATTTTAGTTATCGGTTTGGAGAATCATTTTGCTTTCGTTAAATTAGATATGTTTTGATTGTATG ATTTTCCAGTTTTATAGGTAAGAAGACTTAAACTTCTCCATTAGTTTCATCTATATGGTTTGTAAAGGTCTACAAATAAC AAAGAATGATTTTTTTTCATGGGGAAGAGATTTCCTGAAGTGATAAAGAATTGTTCCACTAAAGAGAAAGCATGCTTATA TAAGTTTAATTACTAGTCTCTCTTGTACGTTGAGAAAGGTCAGAAGTTGGAATTAAGATTTTTCATTTTCTAGGGTGTAT ACAACATGCTCAGATAGCTTATTAATCAACGTAAGTATTTTGTTGTGTATTAAGAACATGGATATGAATACAG
CDS sequence (LotjaGi2g1v0266800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACAGAAACTATATTTAAGATGAATAAACGCGGTCCAACAGAAGCTGCAGATTTTCCATTAAAACAGGAAGGCCTTTC AAGTCATGATGATGATAAGGTCGCAAAGGCTTCAGCAGCGAGCTCATCAGCATCCTCACAATGGCTGAAGTTGAAGGATC CAAGGATTGTGAGAGTGTCTCGCGCCTTCGGAGGGAAAGACAGGCACAGCAAGGTGTGCACAATAAGAGGACTGAGAGAC AGGAGAGTGAGACTATCAGTCCCCACTGCCATTCTCCTCTATGATCTCCAAGATAGGCTTGGACTCAACCAACCAAGCAA AGTTGTTGATTGGTTGCTCAATGCAGCTAAGCATGAAATTGATGAACTCCCACCTTTGCCTATTCCCCCAGGAAACATCA CCCTTGGTTATCCATCTCTTGTTAGCCCAAATACAACTCTCTGGAAATCAAAGCCTAAAGAAGTAGTGGTTACTGAAAAA GACAATTGGGTAAGTAGAAATGAAGATGAGGATGTTAAACAAGGAAGCAATGAAGATGTTTTGCCAAACAATGTATTTCC AATTAGAGCAAATCATCCATCATTTCTTGGCTTGCTGAATACTGTTCATCCACTTGGTTATAATCAGTTTGAGCCTTCAG CTAATGTTGGTCATTTGGCAAACCTTGGATTTGTAAACCAAGGAGATATACCCAGCAATATTAATGCTGTGACTTTCCCT TCAACATTGACTTTATCAACTCAGCCATATTTTCCTTCACATGTGGGAGCAATGGAGATGGATCCAAGACAAATCAACCA CTATCAAATGTTGAGTTCAAGTTCTCAGAATTTAACCATTTGTGATGATCTTCATTCATCTCAGCATCTCATGAGCCAAT CTGGGAAACCATTCAGCTTTGTTGGGAAGTTCAACTTCAAGCAGAATTAG
Protein sequence (LotjaGi2g1v0266800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTETIFKMNKRGPTEAADFPLKQEGLSSHDDDKVAKASAASSSASSQWLKLKDPRIVRVSRAFGGKDRHSKVCTIRGLRD RRVRLSVPTAILLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLPIPPGNITLGYPSLVSPNTTLWKSKPKEVVVTEK DNWVSRNEDEDVKQGSNEDVLPNNVFPIRANHPSFLGLLNTVHPLGYNQFEPSANVGHLANLGFVNQGDIPSNINAVTFP STLTLSTQPYFPSHVGAMEMDPRQINHYQMLSSSSQNLTICDDLHSSQHLMSQSGKPFSFVGKFNFKQN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 40 | 40 | - | – | |
| PANTHER | 9 | 279 | 271 | 1.2E-75 | – | |
| PANTHER | 9 | 279 | 271 | 1.2E-75 | ||
| ProSiteProfiles | 65 | 123 | 59 | 30.4 | ||
| Pfam | 65 | 126 | 62 | 7.8E-26 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. |
Expression pattern of LotjaGi2g1v0266800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…