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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0267400 |
| Transcript ID | LotjaGi2g1v0267400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polygalacturonase QRT3; TAIR: AT4G20050.5 Pectin lyase-like superfamily protein; Swiss-Prot: sp|O49432|QRT3_ARATH Polygalacturonase QRT3; TrEMBL-Plants: tr|V7C371|V7C371_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0267400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:73702685..73704384) extracted from Lotus japonicus Gifu genome v1.2.
CAAGTCAAGGGTTCTTGCTAGACGGCATCCGTGACCTTGGAGGTGCCCTGATTGATCTTGAGGGTGGAAAATACTTAATC AGCCAACCTCTGCGGTTGCCGGCCGGGGTTGGAAACCTCATGGTATGTTTGTAGAAATCATTTTTTGCAAGCTCCATTCA TTCATCAATTAGTATTTTCTTTCTTTTTTCAATGAAGAATATATTCCCTCAGTAAGTTATCAGCTCATTGATTCTTTGTT GAGTCAGTAGATCATCCAAAAGACATCAAATTTGACACTAAGATTGATTGTATTTGTTATTTAATGTTAACAGATACATG GGGGAACTCTAAGAGCCTCAAGTGATTTTCCACCAAATGGGCATCTCATTGATTTGTCAAACCCTACAAGCTCTACTTCA GCATCCTACAATTATGAGTTCATTACTTTCAAGGACCTCTTGTTAGACTCCAACTTCAGGGGAGGAGGCATTTCAGTCAA CAACTCACTCAGAATTAACATAGACAATTGTTACTTTACACACTTCACCACCACTGGAATTCTATCCAAAGGTGGCCATG AAACCTACGTCAGAAACTCCTTCCTTGGCCAGCACATCACCGCCGGCGGAGACAAAAAGGAAAGGAACTTCTCAGGCACT GCAATAAGCCTCGAGGGAAACGATAATGCAGTTACAGATGTTGTGATTTTCTCTGCTGCCATTGGTATCATGGTTACAGG TCAGGCCAACGCTTTTTCTGGTGTACATTGCTACAATAAGGCCACTTTCTTTGGAGGTACAGGGATTTATTTGAAGCTAG GCGGTTTGACACAAACCAGGATTGTGAATTCTTACATGGATTACACCAGCATTGTTGCTGAAGACCCGGTTCAACTCCAT ATCTCTAGCAGTTTCTTCCTTGGCGATGCCAATATTGTCCTAAAATCAGACAAAGGGGTTGTAAATGGTGTCAATGTTGT TGATAACATGTTCTCTGGCTCAGGTAATGGTGTTCAAATTGTGAAGCTGGATCAATCAAATGGTCCCTTTAAACAAGTTG AGCAAGTTTTTGTTGCTAGAAATGTTGTGAAGGGTATGAACTTAAAGGCTACAACTGCAACTATGTCTGTGAATGGGAAT GGAAACTTATGGATTGCTGATTTTAACAAAATTTTGCTTTTCCCTAACCTTATCAAACATGTTCAGTACTCATTAAGCGC CACAGGCAGCACCTTCCCAAATCATGCTATCAGAAATGTGTCTGAAAATCGTGTTGTGATTGAAACAGACAAGACAGTAA CTGCAAAAGTCTTTGTCACAGTGGATCAAAGTATGACAAGTTGAAAAATGTTTGAAGGTGGTGGTGGCCAGAAAATTGGG TCAAGAAGTTCAGACTGAAGAGGGAATTGTGCATAGCTTGGTTGTGAATGAATCAAAACTACTCTTCCCTACTTTGGATA AACTTCAAATTTAACCCTACAGGCAATGATTTTAGACTGTATGTTTTGAGTTATTAAATTCATACTACTCTGAATAGCAG AAAAATATTTGATTGGAGATTGTTTTCATCAGTTTGGGTAGGAAAAAAAGACCTGGACAGAGTAATTAGAAAATATCACA ACTCTTGTACATTTTTTAGTTCATCTCCACTTCCCAACCAAAAAACTTGTATTTCCTTTTGTTATCATTCCTTTGTCTTG TAATATATATTCTTCACGGG
CDS sequence (LotjaGi2g1v0267400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATACATGGGGGAACTCTAAGAGCCTCAAGTGATTTTCCACCAAATGGGCATCTCATTGATTTGTCAAACCCTACAAG CTCTACTTCAGCATCCTACAATTATGAGTTCATTACTTTCAAGGACCTCTTGTTAGACTCCAACTTCAGGGGAGGAGGCA TTTCAGTCAACAACTCACTCAGAATTAACATAGACAATTGTTACTTTACACACTTCACCACCACTGGAATTCTATCCAAA GGTGGCCATGAAACCTACGTCAGAAACTCCTTCCTTGGCCAGCACATCACCGCCGGCGGAGACAAAAAGGAAAGGAACTT CTCAGGCACTGCAATAAGCCTCGAGGGAAACGATAATGCAGTTACAGATGTTGTGATTTTCTCTGCTGCCATTGGTATCA TGGTTACAGGTCAGGCCAACGCTTTTTCTGGTGTACATTGCTACAATAAGGCCACTTTCTTTGGAGGTACAGGGATTTAT TTGAAGCTAGGCGGTTTGACACAAACCAGGATTGTGAATTCTTACATGGATTACACCAGCATTGTTGCTGAAGACCCGGT TCAACTCCATATCTCTAGCAGTTTCTTCCTTGGCGATGCCAATATTGTCCTAAAATCAGACAAAGGGGTTGTAAATGGTG TCAATGTTGTTGATAACATGTTCTCTGGCTCAGGTAATGGTGTTCAAATTGTGAAGCTGGATCAATCAAATGGTCCCTTT AAACAAGTTGAGCAAGTTTTTGTTGCTAGAAATGTTGTGAAGGGTATGAACTTAAAGGCTACAACTGCAACTATGTCTGT GAATGGGAATGGAAACTTATGGATTGCTGATTTTAACAAAATTTTGCTTTTCCCTAACCTTATCAAACATGTTCAGTACT CATTAAGCGCCACAGGCAGCACCTTCCCAAATCATGCTATCAGAAATGTGTCTGAAAATCGTGTTGTGATTGAAACAGAC AAGACAGTAACTGCAAAAGTCTTTGTCACAGTGGATCAAAGTATGACAAGTTGA
Protein sequence (LotjaGi2g1v0267400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIHGGTLRASSDFPPNGHLIDLSNPTSSTSASYNYEFITFKDLLLDSNFRGGGISVNNSLRINIDNCYFTHFTTTGILSK GGHETYVRNSFLGQHITAGGDKKERNFSGTAISLEGNDNAVTDVVIFSAAIGIMVTGQANAFSGVHCYNKATFFGGTGIY LKLGGLTQTRIVNSYMDYTSIVAEDPVQLHISSSFFLGDANIVLKSDKGVVNGVNVVDNMFSGSGNGVQIVKLDQSNGPF KQVEQVFVARNVVKGMNLKATTATMSVNGNGNLWIADFNKILLFPNLIKHVQYSLSATGSTFPNHAIRNVSENRVVIETD KTVTAKVFVTVDQSMTS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 337 | 337 | 1.3E-193 | – | |
| PANTHER | 1 | 337 | 337 | 1.3E-193 | ||
| SUPERFAMILY | 33 | 275 | 243 | 2.05E-8 | ||
| SMART | 59 | 81 | 23 | 190.0 | ||
| SMART | 116 | 137 | 22 | 800.0 | ||
| SMART | 211 | 232 | 22 | 540.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. |
Expression pattern of LotjaGi2g1v0267400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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