Domain Predictions — View

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PTHR33928

Source: PANTHER

Description

No description is available for this domain.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0004650 View details of GO:0004650 AmiGO InterPro QuickGO	Molecular function	Polygalacturonase activity	Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans.	Subterm of GO:0004553

Associated Lotus transcripts 11

Transcript	Name	Description	Predicted domains	Domain count
Lj2g3v1102950.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: polygalacturonase QRT3-like [Glycine max] gi\|356532616\|ref\|XP_003534867.1\|	Domains PTHR33928 PTHR33928:SF2	3
Lj4g3v0200070.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: polygalacturonase QRT3-like [Glycine max] gi\|356510814\|ref\|XP_003524129.1\|	Domains G3DSA:2.160.20.10 IPR011050 IPR012334 NON_CYTOPLASMIC_DOMAIN PTHR33928 PTHR33928:SF1 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF51126 SignalP-TM_EUK SignalP-TM_GRAM_POSITIVE TMhelix	14
Lj6g3v1392550.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Polygalacturonase QRT3 [Medicago truncatula] gi\|357449209\|ref\|XP_003594881.1\|	Domains G3DSA:2.160.20.10 IPR011050 IPR012334 IPR024535 NON_CYTOPLASMIC_DOMAIN PF12708 PS51257 PTHR33928 PTHR33928:SF2 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF51126 SignalP-noTM_EUK TMhelix mobidb-lite	17
Lj6g3v1392570.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: polygalacturonase QRT3-like [Glycine max] gi\|356558236\|ref\|XP_003547413.1\|	Domains G3DSA:2.160.20.10 IPR011050 IPR012334 PTHR33928 PTHR33928:SF1 SSF51126	6
Lj6g3v1412710.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: polygalacturonase QRT3-like [Glycine max] gi\|356558236\|ref\|XP_003547413.1\|	Domains IPR011050 PTHR33928 PTHR33928:SF1 SSF51126	4
Lj6g3v1412720.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: polygalacturonase QRT3-like [Glycine max] gi\|356558236\|ref\|XP_003547413.1\|	Domains CYTOPLASMIC_DOMAIN G3DSA:2.160.20.10 IPR011050 IPR012334 NON_CYTOPLASMIC_DOMAIN PTHR33928 PTHR33928:SF1 SSF51126 TRANSMEMBRANE	9
Lj6g3v1412750.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Polygalacturonase QRT3 [Medicago truncatula] gi\|357449209\|ref\|XP_003594881.1\|	Domains G3DSA:2.160.20.10 IPR011050 IPR012334 IPR024535 NON_CYTOPLASMIC_DOMAIN PF12708 PS51257 PTHR33928 PTHR33928:SF2 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF51126 SignalP-noTM_EUK TMhelix mobidb-lite	17
LotjaGi2g1v0267400.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Polygalacturonase QRT3; TAIR: AT4G20050.5 Pectin lyase-like superfamily protein; Swiss-Prot: sp\|O49432\|QRT3_ARATH Polygalacturonase QRT3; TrEMBL-Plants: tr\|V7C371\|V7C371_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0267400	Domains IPR006626 IPR011050 IPR039279 PTHR33928 PTHR33928:SF6 SM00710 SSF51126	7
LotjaGi4g1v0019600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Polygalacturonase QRT3; TAIR: AT4G20040.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp\|O49432\|QRT3_ARATH Polygalacturonase QRT3; TrEMBL-Plants: tr\|A0A151S624\|A0A151S624_CAJCA Polygalacturonase QRT3; Found in the gene: LotjaGi4g1v0019600	Domains G3DSA:2.160.20.10 IPR011050 IPR012334 IPR039279 NON_CYTOPLASMIC_DOMAIN PTHR33928 PTHR33928:SF5 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF51126 SignalP-TM TMhelix	14
LotjaGi6g1v0244200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Polygalacturonase QRT3; TAIR: AT4G20040.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp\|O49432\|QRT3_ARATH Polygalacturonase QRT3; TrEMBL-Plants: tr\|I1MGU8\|I1MGU8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0244200	Domains G3DSA:2.160.20.10 IPR011050 IPR012334 IPR039279 NON_CYTOPLASMIC_DOMAIN PTHR33928 PTHR33928:SF5 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF51126 SignalP-TM SignalP-noTM	14
LotjaGi6g1v0244400.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Polygalacturonase QRT3; TAIR: AT4G20050.5 Pectin lyase-like superfamily protein; Swiss-Prot: sp\|O49432\|QRT3_ARATH Polygalacturonase QRT3; TrEMBL-Plants: tr\|I1L157\|I1L157_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0244400	Domains CYTOPLASMIC_DOMAIN G3DSA:2.160.20.10 IPR011050 IPR012334 IPR024535 IPR039279 NON_CYTOPLASMIC_DOMAIN PF12708 PTHR33928 PTHR33928:SF6 SSF51126 TMhelix TRANSMEMBRANE mobidb-lite	14

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	9.09