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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0269100 |
| Transcript ID | LotjaGi2g1v0269100.4 |
| Related isoforms 7 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Alpha-1,4-glucan-protein synthase [UDP]-forming]-like protein; TAIR: AT3G02230.1 reversibly glycosylated polypeptide 1; Swiss-Prot: sp|Q8H8T0|RGP1_ORYSJ UDP-arabinopyranose mutase 1; TrEMBL-Plants: tr|V7C245|V7C245_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0269100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:73843434..73845469) extracted from Lotus japonicus Gifu genome v1.2.
AACACTGCTTCTGTGGCACCAACACCACTACTGAAAGATGAGCTTGACATTGTCATCCCCACCATAAGGAACCTTGATTT CCTTGAAATGTGGAGGCCATTCTTTGAGCCTTACCATTTGATCATTGTTCAGGATGGTGACCCTTCCAAAACCATTCAGG TTCCTCCAGGTTTTGATTATGAGCTGTATAACCGCAATGACATTAACAAGCTTCTGGGTCCAAGAGCCTCTTGCATTTCA TTCAAGGACTCTGCTTGCCGCTGCTTTGGCTACATGGTGTCTAAGAAGAAGTATATCTTCACCATTGATGATGACTGTTT TGTGAGTTTTTTTCCCAACCCTTTTTTTCTTTTTAATTTTCCTTTTCTGGGGTTTGAGTTTGTTCATTGTTTATTGACCT GAATGAATTCATTTTCATGCCTCCATATGAATGTGGTGACTTTGTTTGCATATTCTCCCGTACATTGTACATTTTGGGTC TTGTTGTTCTGTTTAAGTATGATCATTAGTCTTTGTTGTTCTGCTTTATGGGTGAAATTCAGATTTGCCCTGCAGCCAGG TCAGCTGTGTACATTGGTTTTATTCATTGAATCTATTAACCATATATTTGTGCATTTATAGAATTTCATTGATTCATAAT GCTAGTTTCTACATTTTAGGATTACTTATATTTATTTGATATTTTGTGGCTTAGGTTGCCAATGACCCATCTGGAAAATC GATTAATGCACTTGAGCAGCATATTAAGAACCTTCTTTGTCCTGCCACTCCCTACTTTTTCAATACCCTCTATGATCCCT TCAGAGAAGGTGCAGATTATGTTCGTGGATACCCTTTTAGTCTTCGTGAAGGTGCACCAACTGCTATTTCTCATGGACTC TGGCTCAACATCCCAGACTATGATGCTCCTACACAGCTTGTGAAGCCTCTGGAGAGGAACACTAGGTATGTACTATGTAC TAGTATGCAGCACTCACATGAAACTATTATTAAAAATTTGAAGTTATTAGCCTATGTAAAGCATGTTTGGTTCAAATTTC CTCAGATTCAATTCTGAAACAGAAGTTTCTTTTCAGAATTGATAACAACTATAGAATCAATTCTAGAATGATTTTCAAAC ATGCAGATATGCGATTTGGATTATAAATATTGTGCTTGATTGTGCATCAGGTATGTGGATGCTGTTCTGACCATACCAAA AGGCACTTTATTTCCAATGTGTGGAATGAATTTGGCATTCGATCGTGATCTGATTGGACCAGCAATGTACTTCGGTCTCA TGGGAGATGGTCAGCCAATTGGACGCTATGATGATATGTGGGCTGGGTGGTGCTGCAAGGTCATTTTTTGCTTTCTACAT GTTTGGATCAACTTCTCTTTCATCAAAATTATCTAGAAGCTACTCATAGAAGCTTCTCCCCAAACCTGATTGCGGCTTCA AAATCAATTGTAGAAGTGTTTCTGAACATGCATTCTATTATTACCCTTGTGGATTAGGATATATATAACATGAAGATAAT CTTATAGAAACAGCTCATAGTTAAATGGATAATTTAGCATAAATTAACAACTGAGATATTTTCATGATGATTTGCTCAGG TGATCTGTGATCATATGGGGCTTGGAATCAAGACTGGTCTTCCCTATATCTATCACAGCAAGGCAAGTAACCCATTTGTA AACCTGAGGAAAGAGTACAAAGGCATTTTCTGGCAGGAAGACATCATCCCATTCTTCCAGAGTGTTGTTCTTCCAAAAGA ATGCACCACTGTTCAAAAGTGCTACATTGAGCTCTCTAAGCAAGTCAAGGAAAAGCTTTCAAAGATAGATCCTTACTTTG ACAAGCTTGCAGATGCCATGGTCACTTGGATTGAAGCTTGGGATCAGCTTAACCCTGCTGGAGCATCTGAGGCCAATGAC AAAGCCTAAATCAATCTTGGTTAACAGCAAACACAGCACTGAACTTATTTATATATTATACTTTTCTCAAGTTTTCTGGT CAAATTTCTTTTCAACTCACCTTTAGTGTCACTTGA
CDS sequence (LotjaGi2g1v0269100.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGAGGCCATTCTTTGAGCCTTACCATTTGATCATTGTTCAGGATGGTGACCCTTCCAAAACCATTCAGGTTCCTCC AGGTTTTGATTATGAGCTGTATAACCGCAATGACATTAACAAGCTTCTGGGTCCAAGAGCCTCTTGCATTTCATTCAAGG ACTCTGCTTGCCGCTGCTTTGGCTACATGGTGTCTAAGAAGAAGTATATCTTCACCATTGATGATGACTGTTTTGTTGCC AATGACCCATCTGGAAAATCGATTAATGCACTTGAGCAGCATATTAAGAACCTTCTTTGTCCTGCCACTCCCTACTTTTT CAATACCCTCTATGATCCCTTCAGAGAAGGTGCAGATTATGTTCGTGGATACCCTTTTAGTCTTCGTGAAGGTGCACCAA CTGCTATTTCTCATGGACTCTGGCTCAACATCCCAGACTATGATGCTCCTACACAGCTTGTGAAGCCTCTGGAGAGGAAC ACTAGGTATGTGGATGCTGTTCTGACCATACCAAAAGGCACTTTATTTCCAATGTGTGGAATGAATTTGGCATTCGATCG TGATCTGATTGGACCAGCAATGTACTTCGGTCTCATGGGAGATGGTCAGCCAATTGGACGCTATGATGATATGTGGGCTG GGTGGTGCTGCAAGGTGATCTGTGATCATATGGGGCTTGGAATCAAGACTGGTCTTCCCTATATCTATCACAGCAAGGCA AGTAACCCATTTGTAAACCTGAGGAAAGAGTACAAAGGCATTTTCTGGCAGGAAGACATCATCCCATTCTTCCAGAGTGT TGTTCTTCCAAAAGAATGCACCACTGTTCAAAAGTGCTACATTGAGCTCTCTAAGCAAGTCAAGGAAAAGCTTTCAAAGA TAGATCCTTACTTTGACAAGCTTGCAGATGCCATGGTCACTTGGATTGAAGCTTGGGATCAGCTTAACCCTGCTGGAGCA TCTGAGGCCAATGACAAAGCCTAA
Protein sequence (LotjaGi2g1v0269100.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWRPFFEPYHLIIVQDGDPSKTIQVPPGFDYELYNRNDINKLLGPRASCISFKDSACRCFGYMVSKKKYIFTIDDDCFVA NDPSGKSINALEQHIKNLLCPATPYFFNTLYDPFREGADYVRGYPFSLREGAPTAISHGLWLNIPDYDAPTQLVKPLERN TRYVDAVLTIPKGTLFPMCGMNLAFDRDLIGPAMYFGLMGDGQPIGRYDDMWAGWCCKVICDHMGLGIKTGLPYIYHSKA SNPFVNLRKEYKGIFWQEDIIPFFQSVVLPKECTTVQKCYIELSKQVKEKLSKIDPYFDKLADAMVTWIEAWDQLNPAGA SEANDKA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 327 | 327 | 8.9E-235 | – | |
| PIRSF | 1 | 320 | 320 | 3.1E-185 | ||
| PANTHER | 1 | 327 | 327 | 8.9E-235 | ||
| Pfam | 1 | 316 | 316 | 4.0E-168 | ||
| SUPERFAMILY | 8 | 216 | 209 | 5.38E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Intramolecular transferase activity | Catalysis of the transfer of a functional group from one position to another within a single molecule. | ||
| Biological process | Plant-type cell wall organization or biogenesis | A process that results in the biosynthesis of constituent macromolecules, assembly, arrangement of constituent parts, or disassembly of a cellulose- and pectin-containing cell wall. |
Expression pattern of LotjaGi2g1v0269100.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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