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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0269300 |
| Transcript ID | LotjaGi2g1v0269300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Poly(A) RNA polymerase GLD2-like protein; TAIR: AT2G39740.1 Nucleotidyltransferase family protein; Swiss-Prot: sp|Q5XET5|HESO1_ARATH Protein HESO1; TrEMBL-Plants: tr|A0A151RDB4|A0A151RDB4_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0269300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:73915387..73917321) extracted from Lotus japonicus Gifu genome v1.2.
CTTGCCCCGATTGTGTTGTTGAATGCTGAGGTCTCAAACGCATGAAAATCACAGTGCACTCCATTCTATACAGGTGCAAT CAATCCACTTGAAAGCAAAGCAAGGACCACCATGGACCCGTTACACTTTTTTCCCGCGTCCATATCCAATGAATGAAGTA GAAAACCTCTCTTCCTAAGTCAGGGATACTGCTCCAAATATTTCAATGGATCTGGTGTGTGTTTCAAGAAGCCTATGCTC ATAGATTGTGATCCTCTTGTCTTCATTTTCCCCATCTAGTGCTGCAAACCAATATTTGCAGTTGCGTTGTCAGTACATTC GCTGCTATTTGGAGTTATTGAGAGACAAAATGAGCACACGTAGTATGTTGGATATTGTTCTACACGATATACTTCGGGTG GTCACACCCTTACAAGAAGATTGGGCGATACGTTTTGCAATTATTAATGATTTCCGAAGCATTGTTGAATCTGTGGAAAG CCTGAGAGGAGCAACTGTTGAGCCATATGGATCATTTGTATCTAATCTCTTCACACGATGGGGTGACCTGGATATTTCAA TTGAGTTATCAAATGGTTCACATATTTCATCTATTGGGAAAAATCAAAAACAGAGGTTATTGGGAGATCTTATAAAAGCT TTGAAACTGAAAGGTGGATGGATCAACTTGCAGTTCATCTCCCATGCGCGAGTTCCCATTTTAAAATTCAAAAGCCGCCG ACAGGGTGTATCTTGTGACATTTCAATCAATAACCTGCAGGGTGTGATCAAATCCAAGCTTTTGCTTTCGATTGACAGGA TAGATGGCCGCTTTCGAGATATGGTTTTAGTGGTAAAGGAATGGGCCAAAGCACATAAAATCAATAACTCTAAAACTGGA ACTTTCAACTCGTATTCCCTCAGTTTGCTAGTAATCTTTCACTTTCAGACATGTGTTCCTGCAATTTTGCCACCACTTAA AGATGTATATCCTGGCAATATGGTTGATAAACTGACAGGTGTTAGAGCTGATGCAGAGGATTTTATTGCGGAAACATGTA ATGCTAACATAAACCGAATCATATCTGACAAATCCAGGCCAATTAACAGAAAATCTTTGCCTGAACTTTTTGTTGAATTC TTAAGAAAGTTTGCTCAAATGGATTCATGGGCCTCAGAGCTGGGAATTTGCCCATATACCGGACAATGGGAACAGATAAA GAACAACATGATATGGCTGCCCAAGACTTATGCAATATTTGTTGAGGATCCTTTTGAGCAGCCACAGATCATATACTGCA AGATCTGTCAGTGCAGGACAACTGAGGGCATTTCTAAGGACATACAGCTTACTTACCTCCAAAAATCAGAATCAAAATTC TCTCTTGACCTTCTTAGCACCACCAGAGGTGTCAAGGTTAATTATAAAACCTGTTATCCCAAATTACAATGGTGGTGGTG GCTATTTCCACCCACCTCAGCTGCCACTACATGTGCAGAGAGCCGAGCACCCTCGCCATCAACATCGGTCGCAGCGTCGT GTTCACAATGGAAGTCAAGGAACAACCAATGGCCAAAATATGGAGGCAAAAGATCCAATAGCCAAAACACAGAAGGGAAA CTCCAACAGTTCAACTTCAAAAGTACCACCTGTGCAGGTACGTCAAGGCCAGCAGATATGGAGGCAAAAGATCCAATAGC CAAAATTCAGAATGGGACCTCTTTTTTTGCATTGAGAACTTAATGGGTTTAGCTATTCAACAGGTTCTAACTGTTGTCTA CTTTTTGTTAATGAGTACCAGAATAATGGTATTTCTTATGTCATGATAATGATTACCATGATTTTTTCTGCTGCTGGGGA TTACAAGGATTATTACTTGATATTTTTGTGGGGGATTACTAATGTAATGCCTTAATTAGACACTTTATTAGACAATTCTA TTCATTGCAAAAAAA
CDS sequence (LotjaGi2g1v0269300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCACACGTAGTATGTTGGATATTGTTCTACACGATATACTTCGGGTGGTCACACCCTTACAAGAAGATTGGGCGAT ACGTTTTGCAATTATTAATGATTTCCGAAGCATTGTTGAATCTGTGGAAAGCCTGAGAGGAGCAACTGTTGAGCCATATG GATCATTTGTATCTAATCTCTTCACACGATGGGGTGACCTGGATATTTCAATTGAGTTATCAAATGGTTCACATATTTCA TCTATTGGGAAAAATCAAAAACAGAGGTTATTGGGAGATCTTATAAAAGCTTTGAAACTGAAAGGTGGATGGATCAACTT GCAGTTCATCTCCCATGCGCGAGTTCCCATTTTAAAATTCAAAAGCCGCCGACAGGGTGTATCTTGTGACATTTCAATCA ATAACCTGCAGGGTGTGATCAAATCCAAGCTTTTGCTTTCGATTGACAGGATAGATGGCCGCTTTCGAGATATGGTTTTA GTGGTAAAGGAATGGGCCAAAGCACATAAAATCAATAACTCTAAAACTGGAACTTTCAACTCGTATTCCCTCAGTTTGCT AGTAATCTTTCACTTTCAGACATGTGTTCCTGCAATTTTGCCACCACTTAAAGATGTATATCCTGGCAATATGGTTGATA AACTGACAGGTGTTAGAGCTGATGCAGAGGATTTTATTGCGGAAACATGTAATGCTAACATAAACCGAATCATATCTGAC AAATCCAGGCCAATTAACAGAAAATCTTTGCCTGAACTTTTTGTTGAATTCTTAAGAAAGTTTGCTCAAATGGATTCATG GGCCTCAGAGCTGGGAATTTGCCCATATACCGGACAATGGGAACAGATAAAGAACAACATGATATGGCTGCCCAAGACTT ATGCAATATTTGTTGAGGATCCTTTTGAGCAGCCACAGATCATATACTGCAAGATCTGTCAGTGCAGGACAACTGAGGGC ATTTCTAAGGACATACAGCTTACTTACCTCCAAAAATCAGAATCAAAATTCTCTCTTGACCTTCTTAGCACCACCAGAGG TGTCAAGGTTAATTATAAAACCTGTTATCCCAAATTACAATGGTGGTGGTGGCTATTTCCACCCACCTCAGCTGCCACTA CATGTGCAGAGAGCCGAGCACCCTCGCCATCAACATCGGTCGCAGCGTCGTGTTCACAATGGAAGTCAAGGAACAACCAA TGGCCAAAATATGGAGGCAAAAGATCCAATAGCCAAAACACAGAAGGGAAACTCCAACAGTTCAACTTCAAAAGTACCAC CTGTGCAGGTACGTCAAGGCCAGCAGATATGGAGGCAAAAGATCCAATAGCCAAAATTCAGAATGGGACCTCTTTTTTTG CATTGAGAACTTAA
Protein sequence (LotjaGi2g1v0269300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSTRSMLDIVLHDILRVVTPLQEDWAIRFAIINDFRSIVESVESLRGATVEPYGSFVSNLFTRWGDLDISIELSNGSHIS SIGKNQKQRLLGDLIKALKLKGGWINLQFISHARVPILKFKSRRQGVSCDISINNLQGVIKSKLLLSIDRIDGRFRDMVL VVKEWAKAHKINNSKTGTFNSYSLSLLVIFHFQTCVPAILPPLKDVYPGNMVDKLTGVRADAEDFIAETCNANINRIISD KSRPINRKSLPELFVEFLRKFAQMDSWASELGICPYTGQWEQIKNNMIWLPKTYAIFVEDPFEQPQIIYCKICQCRTTEG ISKDIQLTYLQKSESKFSLDLLSTTRGVKVNYKTCYPKLQWWWWLFPPTSAATTCAESRAPSPSTSVAASCSQWKSRNNQ WPKYGGKRSNSQNTEGKLQQFNFKSTTCAGTSRPADMEAKDPIAKIQNGTSFFALRT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 306 | 301 | 4.5E-97 | – | |
| PANTHER | 6 | 306 | 301 | 4.5E-97 | – | |
| SUPERFAMILY | 7 | 146 | 140 | 3.99E-28 | ||
| CDD | 27 | 148 | 122 | 4.88022E-27 | – | |
| Gene3D | 31 | 151 | 121 | 3.5E-57 | ||
| Gene3D | 152 | 306 | 155 | 3.5E-57 | – | |
| SUPERFAMILY | 154 | 304 | 151 | 5.23E-26 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0269300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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