Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0270800 |
| Transcript ID | LotjaGi2g1v0270800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pollen Ole e 1 allergen and extensin family protein; TAIR: AT5G15780.1 Pollen Ole e 1 allergen and extensin family protein; Swiss-Prot: sp|P16952|SSP5_STRGN Agglutinin receptor; TrEMBL-Plants: tr|I3T8B6|I3T8B6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0270800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:74170876..74174136) extracted from Lotus japonicus Gifu genome v1.2.
CCATCATAAACTGCCAAATGCTACTATAATTTATACAATATTAATAGTGTATTTGGTTCTGAAAAGTCTTATTATATCAC TCCCAAAGAGTAAGTTACAAAGTGTAGTTTTTCTTTAGATAGTGTGCCACCACAAATCCAAACAAGTTAGCATCACACAC TTCACAGGTCATCTGCTATCATAGTTTATCTTTTGGCACTGACATCCAGAAACTCACAGGTGCAAACAAAAAAACAGCTT GTCTTCATTCCCAGCAAGGACATACTTCCTACGTGTTGGTCATCAGTAACGTCAAATGTCATCCTCACAGACTCTCTGGC TACTTTCTGTGTCTCGTGAACCTACAGTGAACCAATTATTCAGAAGAAAAAATAGCATTTTATATAGTTCAGTCTGTGTG CTGTTTTCTATTAGTTTGTGATATTTATGTTCAATATCATAAAACTGAAAGACACTTAACAACATGTCTATTAACTTTCC ATCCGATGCTGTAAGAGAACAAGTGTGAAACCAATGAAATGTTTTTGCATGATATGAGCCATTTCTAAGTCTTTATCAGA GACAGCTAGAAGGAACAAAGAGCAGTAACCGTGTGTTACAGTGTTGCATGATTGCACAAAAAGAAAGAGGATTAATTAAG AGCACACCTTAACAGTTTGTGACATATATATAGACCCTCATTATTTATTAGGTAGCACAGTTACCAATTCACTTCACTCA CAAACATTAGAATGTCTTGGTTCCTTGTAATTCTGTTGCTCAGTCTCACATGTTCAGAGGCTAGTAGCCATGACAGCAAG AAGCTTCTACCCTCAGCTGTTGTGGTTGGCACTGTCTACTGTGACACATGTTCTCAACAGGCTTTCTCCATGGGCAGCCA CTTCATTTCAGGTCCATTTCTAGTAGGGGTTCCATTTCATACCCCTTAAGGTGTTTGTCAAAATATTGAGCCTAATGTTT TGTTGTTATGTTTTTGTGTACAGGTGCATCAGTAGCTGTAGAGTGCAAAGTTGGGAATTCAAAACCAAGATTCAAGAAAG AAGTGAAGACAAATGAGCATGGGGAATTCAAAGTGCAGTTGCCTTTCCATGTGAGGAAACATGTGAGGAGAATCAAGGGA TGTACTTTTAAGTTGTTAAGTAGTAGTGAGCCTCACTGTGCTGTGGCCTCAGCTGCTAGTTCTTCTTCTTCACTGAGTCT CAAGTCAAGAAAGCAGGGAGAACACATATTCTCAGCTGGATTTTTCTCATTCAAGCCTGTGAAAAAGCCAAACCTCTGTA GCCAAAAACAAAGCAGCTCAGGTAAAATAGTTCCTGACCCTGAAGATTTCTTTTTCTTTCCTCCAATCCCATTTTTTCCA CCTCCTCTTATCCCTAACCCATTTCAGCCACCATTAGTCCCTAACCCCTTTCAGCCACCACCATTAATCCCCAACCCGTT TCAGCCACCTCCTCTAATTCCTAATCCTTTTCAACCAAGTCCACCACCACTCTTACCTAACCCATTCCAGCCACCAAGTC CACCACCACTCTTCCCTAATCCATTTCAACCACCAAGTCCACCACCACTTATTCCTAATCCATTTCAGCCACCACCAAGT CCACCACCATTTATCCCTAACCCATTCCAGCCTCCCCCATCAAAGCAACCACCTTCACCTTTGTTTCCTTTCCCACCAAT AGTAATACCAGGTTTAACTCCACCACCACCACCACCTCCTCCACCACCATTTTTCCCTCCTTTCCCTCCATTGTTCCCTC CACTTTTCCCTCCACCTGGCAGGCCTCCTATTTCAACAAAGAATTCTTCCCCTTGATCAAGTGTGTGTTTGGAATTCGTC TATAGTCGATTCTAAAATCAGAATCAATTCTTAGGAGAAGTTTGTATAAGTATCTTAGGAGAAGTTTGTATAAGTAGCAT ATATCAATGTACAATTTATCTACTTTATGATATAATTAGCTGAACATGGGGATGGATATACAGCATTTATAGTAATAATT AGTAATAAATATATGGATATAAGCTCATCTTAGAGCTTATCTTGTAAAAGTCTTGCTATTTGTGTAATTTGTATCATGAA ATTGTTTTAGAAATGCAGAGTTTGAGCTTATGTTGAAATACCTCAGCTTTGCTATGCCACATTATCCATCATTCATAGGA CATATCTACTTAACATTGCTATATGGACTTTCATTGATGCATAAACCCTCATTGGAGTTAGAATTGTGAGGAAGACTAAA CTATAGTGATTTCATAAACGAGTGGACTAAAATTAGAGATAATTTTGGTGAAGGACCAAAGATAGTTGCCAACATTTTCT TGCATTAAAAATATATTTAACTCTTTTTTTTTTGGTCAAAGGGAATAGTTTCATTAGATGGAAAGGGCCATGCCCAGTAC AAGGCTACAAGAGCCAAACATTCAGCCTTTCTACAGAGCCCATACAAATTCTCAAGCAATACAATCAGGCCTGCTAGCTG AAGTACACAGTAAACTTACAAGAAAGTTCTATTACACTTAAGCACATGACTCATTTGTACATCTAAACACAGTTAGCTAA AGGAGATTTAAAAAAGAGACAACTTGCAAGCCCAAAGCCACCAAGCCCATCACCAATAAGCCCAAAAACTCAGCCCAATA AAGAAATCCAAACAAACCCTAGCAATTTGGGATCTGAGGCGTTGGAAGCGATGGCGACGGCGGCGGGACGGCGTTGGCTT CACTGCTCAACCTAGAACCTGATCTCCTGCAAACAAAGCGAAAATTTGATATGAAAGCTTAAATGTCGCTTCTTCAAGAC CTTGCCGGCTCTGCCGTCAGCTCTCTGCGGTGCACAGCACCTCAGAACAAGCAATAGACCAGATCTGAAAGGAAGGAGCG ATGAGACCATGGAAGTACCACTGAAGATGATGGTGGCCACAGCTTGTGGTTAGTGGTTGGAGGTGGAGGTCGTGGGTGCG AGGAGGCCGCAGAGCTTACCATCAAACAATGAAACACGATGGGAAGAGAAGAAGACGGTGGTAGAGGTAGAGAAAATGGT GAGAAGAGGGCGGTGGCAGTACGGTGGAGATGGCAAGACAACAGCATGGTGGGCGGATGAAAGCAAAAGGAGGAGAAAAC CAGACTAGAAAAAGAGAAAAACCCACTTATTGGGTAGTAAATCCACCTACTGTGGAAGAAAACCCACCTACTGTGGGAGA AAGCTACCTACCTAGTGCAGGAGAGGCCTCCATGGCGGAATAAGTGTTTAACATATATTGG
CDS sequence (LotjaGi2g1v0270800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTTGGTTCCTTGTAATTCTGTTGCTCAGTCTCACATGTTCAGAGGCTAGTAGCCATGACAGCAAGAAGCTTCTACC CTCAGCTGTTGTGGTTGGCACTGTCTACTGTGACACATGTTCTCAACAGGCTTTCTCCATGGGCAGCCACTTCATTTCAG GTGCATCAGTAGCTGTAGAGTGCAAAGTTGGGAATTCAAAACCAAGATTCAAGAAAGAAGTGAAGACAAATGAGCATGGG GAATTCAAAGTGCAGTTGCCTTTCCATGTGAGGAAACATGTGAGGAGAATCAAGGGATGTACTTTTAAGTTGTTAAGTAG TAGTGAGCCTCACTGTGCTGTGGCCTCAGCTGCTAGTTCTTCTTCTTCACTGAGTCTCAAGTCAAGAAAGCAGGGAGAAC ACATATTCTCAGCTGGATTTTTCTCATTCAAGCCTGTGAAAAAGCCAAACCTCTGTAGCCAAAAACAAAGCAGCTCAGGT AAAATAGTTCCTGACCCTGAAGATTTCTTTTTCTTTCCTCCAATCCCATTTTTTCCACCTCCTCTTATCCCTAACCCATT TCAGCCACCATTAGTCCCTAACCCCTTTCAGCCACCACCATTAATCCCCAACCCGTTTCAGCCACCTCCTCTAATTCCTA ATCCTTTTCAACCAAGTCCACCACCACTCTTACCTAACCCATTCCAGCCACCAAGTCCACCACCACTCTTCCCTAATCCA TTTCAACCACCAAGTCCACCACCACTTATTCCTAATCCATTTCAGCCACCACCAAGTCCACCACCATTTATCCCTAACCC ATTCCAGCCTCCCCCATCAAAGCAACCACCTTCACCTTTGTTTCCTTTCCCACCAATAGTAATACCAGGTTTAACTCCAC CACCACCACCACCTCCTCCACCACCATTTTTCCCTCCTTTCCCTCCATTGTTCCCTCCACTTTTCCCTCCACCTGGCAGG CCTCCTATTTCAACAAAGAATTCTTCCCCTTGA
Protein sequence (LotjaGi2g1v0270800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSWFLVILLLSLTCSEASSHDSKKLLPSAVVVGTVYCDTCSQQAFSMGSHFISGASVAVECKVGNSKPRFKKEVKTNEHG EFKVQLPFHVRKHVRRIKGCTFKLLSSSEPHCAVASAASSSSSLSLKSRKQGEHIFSAGFFSFKPVKKPNLCSQKQSSSG KIVPDPEDFFFFPPIPFFPPPLIPNPFQPPLVPNPFQPPPLIPNPFQPPPLIPNPFQPSPPPLLPNPFQPPSPPPLFPNP FQPPSPPPLIPNPFQPPPSPPPFIPNPFQPPPSKQPPSPLFPFPPIVIPGLTPPPPPPPPPPFFPPFPPLFPPLFPPPGR PPISTKNSSP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_NEGATIVE | 1 | 19 | 19 | - | – | |
| Phobius | 1 | 2 | 2 | - | – | |
| Phobius | 1 | 19 | 19 | - | – | |
| SignalP_EUK | 1 | 19 | 19 | - | – | |
| PANTHER | 1 | 158 | 158 | 1.5E-113 | – | |
| SignalP_GRAM_POSITIVE | 1 | 17 | 17 | - | – | |
| PANTHER | 1 | 158 | 158 | 1.5E-113 | – | |
| Phobius | 3 | 14 | 12 | - | – | |
| Phobius | 15 | 19 | 5 | - | – | |
| Phobius | 20 | 330 | 311 | - | – | |
| Pfam | 31 | 119 | 89 | 3.3E-20 | – | |
| PANTHER | 165 | 209 | 45 | 1.5E-113 | – | |
| PANTHER | 165 | 209 | 45 | 1.5E-113 | – | |
| PRINTS | 169 | 190 | 22 | 5.6E-9 | – | |
| PRINTS | 193 | 209 | 17 | 5.6E-9 | – | |
| MobiDBLite | 194 | 305 | 112 | - | – | |
| PANTHER | 208 | 328 | 121 | 1.5E-113 | – | |
| PANTHER | 208 | 328 | 121 | 1.5E-113 | – | |
| PRINTS | 217 | 234 | 18 | 5.6E-9 | – | |
| PRINTS | 240 | 265 | 26 | 5.6E-9 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0270800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…