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LotjaGi2g1v0276300.2

Overview

Field Value
Gene ID LotjaGi2g1v0276300
Transcript ID LotjaGi2g1v0276300.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Thioesterase-like protein; TAIR: AT1G68260.1 Thioesterase superfamily protein; Swiss-Prot: sp|Q8W583|ALT3_ARATH Acyl-acyl carrier protein thioesterase ATL3, chloroplastic; TrEMBL-Plants: tr|G7K1I9|G7K1I9_MEDTR Pollen thioesterase; Found in the gene: LotjaGi2g1v0276300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:74804241..74808866) extracted from Lotus japonicus Gifu genome v1.2.

GTGGTTCTTAGTTCTTACCTTAATAAGTAACTTGGTCTTGTTGGCAACATTGCTGTACGAGAATGACGATCAAATCGAAG TATAAAACATTGAATGAGTAAAATCCTCTTTCTATTTCCTTTTCGTGTGCAAAAACAATGTTGCACACATTTCCATTTCC TTGTTCCATCCATGCTTCCATGGCGGCGTTGTCTTCCCAATTGTTCCACAATACCACGTCGCTTCATCTCACTCGCCCAT CTCCCCCTTTCCCGTTTCCCCGCCGGCCGTTCAATCCGCCGCTGCTCCGATCAATTCTCCCCGTGAACGCCGGCAACTCT CTTCCGCTCTTCGATTTCAGCGGGGGCAAAGGGTAATCGTTAATTCTTATGTTGGCATTTTTTAAACTTTCATTTGCTTC TGGGAATGAAAAAGTTTGAGCAGTTTAGGAAGGATTGTTTATCTCTAGCTTCAGCTTGACTGCATTGAAGTTCTTATGTT TTGTTGGTACTTCATTTGATATACTAAGCAGGTTATACTCATTTACCTTTGTCATTTTGCAGAATGAGTGGGTTCCTTGA TGTCGAACTAAAAGTCCGCGATTACGAGTTGGATCATTTTGGTGTGGTCAACAATGCAGTTTATGCAAGTTATTGTCAGC ATGGTGAGAACTCATGAGCTGGTACAAACAAATAGATTTTCATTAGTATGGACTATGGATTGCTACTGTTACCTGAATGT TTTCTTTTGAGATAATGACTTTTTTCAAATGATGTTGCAGAAAACTTTTTATTTTATATTTATCATAGCTCTTGTTGATA ATGTATGGAAATGAATATACTTGTATATATGTTGAGGTGTTTATAAATTTCAAATGAACGCTAAATTTTGACATGGCATG TTGCGAACAGCAATGCTGCCGTAAGCTGGTGATTTTAAGATAAGTGATTGTGTGCTTTTCTTGGCATATCATAACTGGTT AGTGACCCCAGCTTAGCTTGATATCTTACATCTTTTTGCTAAGATAAAGCTTATATGATCTTCAGATTGGTCATTGGTGA TTGTGTGCTTTTCGTGGTATATCAAAACTAGTTACTACCCCTTGCTTTGCATGTTTATTCTTTAATATCTTAATCCTTTG TTTTAGATAGAAAATTATATTTTGATTTAATTCTTGAGCAAAATTCGACTTGAATTTAGAAGTTCAATCCAGGTTCAAAA TTATTATTATGAAAAAATCATTAAGATAAAGCAACAAAATCAGACAAGCACTAGCATAAGATGAAATTTATAATTGTTGT TTTTGTTGTAGTTGTTGATGAGAAGGAAGAAAATGAAAAGCATATATGTGTGAATCCGTGTGTCTCAATCACACAACGAA GAATAATGTACACAGTAGGAGTCATAAATATAAGGATTTACAGTTGTTGTATTTATGATAATCATAGAATAATATCCAAC ACAGAATCAACCTTTAATTATGATGTAATATAATGGTTATCCACACTTATAGTTTCCTATTGTTTCTCCAAGCGCTATAT GCAGTGTTTTTCTTATCCTGTTGGAAATATATCCCTTTCTCTAGATCATTCTTCTGGTTTATTTGAGCCTGTTCAAGTTG TAATCAGGGGGTGAAACTTGACAACTACTGAATTTACATATTTTGAATTGACTGTCTGCAAATCTTTTAAATTATCTTCC CAAGTCTTGTGGCAATTAAAAGGCATTATTGATATTTTACATTCATAAACTGATCACTTTTCTATAAATATCTTCATAAG GTCGTCATGAACTCTTGGAAGGAATTGGTATTAATTGCGATGCTGTGGCTCGTAGTGGTAATGCATTAGCACTGACAGAA TTATCACTCAAATTTCTTTCACCTCTAAGAGTAAGTCTCTCTAATTTTGTGGTCACTCCCGGTTTCTAGGATACAGTGTG TATATTCTCCTGATTCACAAAGGATATGATTTCTTGTATAAGATAGTTGTCAGCCAATATTTGCTCTTATAGAATTTAGT AAATTTGTGTGACTAATCAGCGTACACATCCATATATTTATACTATGTAAGATATTGAATACATATGAATGTGTTCCTAA ATCACATCCCAACAGTAACAGCTATTTTAATTAACTAAGAATCAATAACACTCTCTCAAGCTGGAGCATGTATGTCATAT GTGCCAAACTTTTCAAAATAAAATAAAATGTATGTCATATGTGCCAATCTTGTTACATATAAACTCAATCTTGTTAGATA CAAGGGTTTTTTATTGGCTCCCTCTAACCTGAACGGAGCTTGTCATTAGGACCCATATTGAGTATCGTTTTGTCTGACAC TCCAGCTGTTGGATTTATTTGTCCAGCGTCACCCTTAGGATTCGATAGGCTTAACATCCCAACCCATGACTCCTGTAATA GGGCTGCGCCCCTTGAGCTTGATGCGGCTTTGAGGACTATAAGGGAATAAAGTTGTGCCCTTACCAACAAATATAGCTTT TAGTCAAGTGGTAGGCGCTTGGTCCAATACCACCATGCTAGTTTCCTTAACTGAGATCCAACACATAATTGCGCTTAGCC GTTTGTACTTGTATTAGACTGAGCAACCTCAATCCCCTCAAAGAATTTTGGAGGATCCAAATCTTTGGTCTGAAAGTGGT TAAATAGATACAGTTTGAGGCTATAAATTCCAGCCATATCATTACCGATGATGATGTCGTCAACCTGTGTATCATGTAAT TACAAGTTATACAACTACTCGGCAAAGAATGGAACATGATGTGATCCTAAATCAAAGCCCTATAAATGAGTAACAGCTAT CCTGAAACATATATACATATTTGATTCTAACTGCTTTTATTTTAAAAAATATGCATCCAGAGTGGAGACAAATTTGTTGT AAAGGTTAGGATATCTGGCTCTTCTGCTGCTCGATTATACTTTGATCACTTCATCTATAAACTGCACAACCAAGAGGTCC ATCTCCATCACTTAAAGTTTATTCTTTTTACATACATCTTTCAGAATTTTGTTGATATTTGGTAAATTTGACGGCAGCCT GTTTTGGAAGCCAAGGCCACAGCAGTGTGGCTTGACAAAAACTATCGCCCTATTCGCATTCCAGCAGATATGAAGAGTAA AATTGTAAAATTTATTCGAAATGAAGACTCTTGATTCAGTGTCCCAATCTAGAAGCTTCACTTACTAAGTCCGACACATC CACAACAGGAGCAGTTACTAGAACGTGGGGGCAGGAAGATCAAGCTAAGGCGGGAACTGCAGTTTGAAGCATGAGTTCGA GGAAAGTTAAGATGTGTCGCGGGAACGACTAGGATTAGGTAGTTTCTTTCAATTTTAGTACTGTCAGCAGTATTATTTAG TTTGTTTAAATTCTAGTACTACAAATAGACCAATGTAATTCAGAAAAGGGGTTGGATACTTGATACTCACACTCTACAAT GCCTACACGTCGACCACACAGAAACAACTATAAAAAATAGGAGCTTCATCCAGTCTTTTCCTTTTCTTTAAGTTATTTAA TCAAGTTTTTTCCTTCCATTTACTTTCTTTACGCTTTCCTTTATTTTTATGTGCATTCCTATTTAATTTCGTTACTTTTG CACTTGTTAATTTAGTTTCAGAACTCTTTCTCGAAACACAAGTCTTGATTCACAGGAACCTTGATTGTCAAAGTTATCAT CAGGTAGCTTGGACCTTTATTTGTTAAAACCTTTACAAAACAAGAATTTTGGTTCATCGGGACCTTGATTTCCTAAATTA TCACCGGATATTTTGTATGTTTTGTGTTAAAACCTTTTTCAAAATTTAAGTATTGGGTTCACCGGAGCTTGAACTTATCG AGTTATTACCGGATAACTTGTTGGTTTTCGAACTTGCTTTGGCAAATTCACAACATTTTTTACTGCTCTTTAAACTGCAA TGCATTCTTTATAGCTAATAAGCCATCAAATGGAAAGCCTCCACATACTAGGACATGATCCAATTCCTAGATTGTTCTTT GAATCCTCCATTTGTTTGCAGGTGTGATTTTCCCGCGTAAACATGTACATTCTGTTATGTACATAAAGGTACGCTTGATT GACCTGGCCTCGGGGAGGCGATGTTTGACAAGGGAATTGTGAATTGAGCTCAATAAAATGAGAGTCTGCAATTAACTGTG GTTTTCTTTTTTTGAAAAGTAGTTAACAGAGAATGAAAAACGAAGAAGAAGAGAAGAGAATTTCAACTGATTGAAGAAAA ATGATTCAGTTGGTTACACAAGGTTTAACTATCTACTATTTATACTACATAGCTGCTAGTACACTATAACAATCATACTA CTGTACACACTATAGCCTTCTCCTCATTCTGTTATAACCGCCTCAACTCCTTGCTTAGCTGGAAGCTGCTGAGCTGTCAA TGTGCTGGCTGATGACATGGGTTTAGTCTTCTTACTATGTTCTTCTGATTCATGGTGCTTATTTGTTAGTAATTAATACT TCTGGAACTTCTCTATTTTATCATGCTTTTGCTTGTCTATACAATTCTGGGTGATATGCAATTATGCATAGATTTAATGA GTGTTAACAGGTGCCCTTATCATTAACAATTATGATTCTTGTGTCTATCCAACCTCATATATTCTG
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0276300.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTTGCACACATTTCCATTTCCTTGTTCCATCCATGCTTCCATGGCGGCGTTGTCTTCCCAATTGTTCCACAATACCAC GTCGCTTCATCTCACTCGCCCATCTCCCCCTTTCCCGTTTCCCCGCCGGCCGTTCAATCCGCCGCTGCTCCGATCAATTC TCCCCGTGAACGCCGGCAACTCTCTTCCGCTCTTCGATTTCAGCGGGGGCAAAGGAATGAGTGGGTTCCTTGATGTCGAA CTAAAAGTCCGCGATTACGAGTTGGATCATTTTGGTGTGGTCAACAATGCAGTTTATGCAAGTTATTGTCAGCATGGTCG TCATGAACTCTTGGAAGGAATTGGTATTAATTGCGATGCTGTGGCTCGTAGTGGTAATGCATTAGCACTGACAGAATTAT CACTCAAATTTCTTTCACCTCTAAGAAGTGGAGACAAATTTGTTGTAAAGGTTAGGATATCTGGCTCTTCTGCTGCTCGA TTATACTTTGATCACTTCATCTATAAACTGCACAACCAAGAGCCTGTTTTGGAAGCCAAGGCCACAGCAGTGTGGCTTGA CAAAAACTATCGCCCTATTCGCATTCCAGCAGATATGAAGAGTAAAATTGTAAAATTTATTCGAAATGAAGACTCTTGA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0276300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLHTFPFPCSIHASMAALSSQLFHNTTSLHLTRPSPPFPFPRRPFNPPLLRSILPVNAGNSLPLFDFSGGKGMSGFLDVE LKVRDYELDHFGVVNNAVYASYCQHGRHELLEGIGINCDAVARSGNALALTELSLKFLSPLRSGDKFVVKVRISGSSAAR LYFDHFIYKLHNQEPVLEAKATAVWLDKNYRPIRIPADMKSKIVKFIRNEDS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SignalP_GRAM_POSITIVE
SignalP-TM
1 16 16 - –
PANTHER
PTHR31793
21 210 190 1.0E-81 –
PANTHER
PTHR31793:SF27
21 210 190 1.0E-81 –
Gene3D
G3DSA:3.10.129.10
73 210 138 7.8E-33 –
SUPERFAMILY
SSF54637
73 208 136 1.39E-34
IPR029069
CDD
cd00586
79 187 109 3.56666E-29 –
Pfam
PF13279
86 202 117 7.7E-12 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0276300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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