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LotjaGi2g1v0277100.1

Overview

Field Value
Gene ID LotjaGi2g1v0277100
Transcript ID LotjaGi2g1v0277100.1
Lotus japonicus genome version Gifu v1.2
Description Homocysteine S-methyltransferase-like protein; TAIR: AT3G25900.1 Homocysteine S-methyltransferase family protein; Swiss-Prot: sp|A4ZGQ8|HMT1_BRAOT Homocysteine S-methyltransferase 1; TrEMBL-Plants: tr|I3S0S3|I3S0S3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0277100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:74887287..74890722) extracted from Lotus japonicus Gifu genome v1.2.

AAAAAAGAAGCGGATTGAGCGGAGGGGAAGTAATTTGTTTCATTCCCAAAAAAGAAACGGATGGATGGAGTAATTTGATT TTGACTAACTCGTTTGAAAAAGAAGCAAAATGGCATTTAGTCCACATATCCATATTCAAACCAAAAGAAAAGAAAAGAAC CTAAATGCTTATTTCGTCTATATTCACACCTACACCTACTACAACATCCACCGAACCCAACAACGCGTAGCGGCAATAAG AAGCCTGTGTCCCTCCCTCCCCAACGTGCTAACATGCTCTGTTCCCTTCACGGTATTTGAACGTCCTCGTCGTCGTTGTC ATCGAAGACGAGAAACGCATATACCATGAAGAGCGACAAGAAGCCATCATCGTTGCAGGATCTCATTGAGAATGCACCTG GAGGTTGTGCTGTTACCGATGGAGGGTTCGCTACACAGCTTGAAAAACATGGAGCTTCTTTCACTGATCCTCTTTGGAGC GCCGTTTGTTTGATCAAAGACCCCCATCTTATCAAGAAGGTTCATTTTCATATTGTTATTTTCTCATTTTCTTCTTCTAT GTTTTCCCCTGTCTTTGTTGAAAATTTGATTTGTTTTTGTTTAGGTTCATTTGGAATATTTGGAGGCTGGTGCAAATATA TTGGTTACCTCATCTTACCAGGTAAAGTTTAATAGTTTATGACTTTTGTACACAACCAATGCAATAGGTTTTGGATAAAA AATGTGCTGTGGTGTGGTTTACTCTTTGTTCAATGTGGGGGGTGCCCAAAAGTGAGGTATAACCTTGGCCCACACATTGT TTGTTTGTATCATTGAAATGGAAAAACAGAACATTCTGTTTCGATCAATGTTCTATGTTGCTAAATGCTTATTCACATGA ATATGACTTATAAAGCATTTGCTTGTGATAGTCTAGTTTCATTGCTTCCAGCCACTTTACAATTTGAATCTATATGCCAA GGTTGAAATTTTAATGCTTGAGAAGAAAAGTTTAGGACCTTTGGTTTTTTGCACCTGTTATTATCATGCAATGTTGGAAA TTTATTGTTTGCTCATGATTTTGTTTATATCATTATAGGCTACACTGCCTGGATTTTTGGCAAGGGGGCTGTCCATTGAA GAAGGGGAGATGCTGCTAAAGAGGAGTGTGAAATTGGCAGTTGAAGCCCGGGATAGTTTCTGGAATTTTTCTAAAAGAAA TCCTAGTAATAAATATAGACAGGCTTTGGTTGCAGCCTCCATTGGAAGCTATGGGGCTTACCTTGCTGATGGCTCAGAAT ACAGGTTCCTCTTCACTTCTTAAAAGTTGACAGTTTAGTTTCTTTCTGCTAAGGAACATCTCTATTTATGTTCAGTATGT TAATATAATTTATTCTTCTTAATGTCTCCTTGTAGGGGATTGTATGGACCAGATGTGACTTTGGAGAAGTTGAAGGATTT TCATCGCCGCAGATTGCAAGTTCTTGTTGAAGCTGGTCCAGATTTGCTTGCTTTTGAGACAATTCCAAACAAAATTGAAG CTCAGGTCTTTTTTTAACCATTGTCATTAAGCATGTTTCATGGATAAGTATGTTTTGCAGTAATTCCTTAAACTTTATTA CTGCAACCCTACACAGTTTATAAGTATAGCTTTGTTGGATCATAATACTAACCTCAGCAACATTGTGAAACTAGATTTTT CTATTCTGTAATTTTTCAACTCTGACATGTCTGGTTTCTCTAATGACATTTGTTTTTCGAAATCCTTAGTATTGGATAAA CTCTGTTCCTGCTTTGGTTCTTTAAACCAATAAGCCCACACACTTGGAGATTTTTTGTAAATTTGTTCGATTTCATTTAG AGAAAGCATCAATTAAAGGAACACCAAACACTCAAACATTAGAAGTTCCAATGTATTATTTCCTTGACAATAGAGAAAGC ATCAAAACTTAACTTGAAAAAATACTGACATTGATGCTTTACACTCATGCAATGGACTTCTTATGTAAGACACTGAAGTA TCTTATTCTCCTTTTTCTTACTACTTTTCTAACCTGTCTTACTAAATCATGTGATACTCTATGATTGAAGAAAACTGTCA TAATAAAAAAATGTATCTTTACTATGAAGATCTATTTAGATTTGGATACCCAATAATGCCAAACACCCTGAGTTATTCCT ATTGTAAGGTTGTAGTGACTATTCTCAACATTTTTTATTTGTTTCTTTTAATTCTGACTTTTACAATCTAGGAAGCTTTT CTGGTATTTATTGTCCAAATATCCAATTGCAGGCTTTAGTAGAATTGCTTGAAGAAGAAAATGTACAAATCCCATCTTGG ATCTGCTTCACCTCTGTAGATGGTGAAAATGCTCCCTCAGGAGAGAGTTTCAAGGATTGTCTTGAAGCAATAAATAAGAG TGACAAAGTAGGTGCGGTTGGTATAAACTGTGCACCACCCCATTTTATGGAAAATCTGATATGCAAATTTAAGCAGGTAA CTCTTAAATCTCATCCCAATAGTTTGAATATTTTGAAAAGGAATTCAATGTTCATGATCAGAGAATGAAAATTTGAATAT CTTATCCCTGCAGTTGACAAAGAAGGCAATCATTGTATATCCCAATAGTGGAGAAGTATGGGATGGTAGAGCCAAGAAAT GGCTAGTAAGTCAAGCTTATGTCCCCATCTCTCTGTTTTTCATTTTCTGACACACACCTAAGACTCACATGCACATTAAT TTTTATGTTTCATAAGTTGATCAAGTGTGTTTTCCTTAATTGACAGCCATCTAAGTGTTTTCACGATGAAGATTTTGGAT TTCATGCGACAAGATGGCGTGATTTGGGTGCTAAAATTATAGGAGGTTGTTGCAGGACTACACCCTCCACCATTCAAGTT ATTTCAAATGCTTTAAGAGAAGAATCTTAGTTGTGCTTGTTGATGTAGTAATTGTTTTCAACAAATTGAGAGATTTTGTC TAGGCAATCTCTAAGATCTAGAATATGAACCTTCAAATTTTGGTTGTCTTAAGCGTGTTCATTCAGTTGAAAGGAATTCG TTTCTTTATGCTTAAGTAATAAGAAAAAAATTATTTATACTTGCGTTAAAACTTTGGATAAACCTTATATATGGTCTATA ATCTATGTAGATAAACCAATCCAAGTCAAGAATCTGTTCATGTTAATAAGCAATGTTATCTACTCAAATGTATCAATGGG AATATTACCATTGTAAATTACAGTCCATTGTATTTTTAACTTTTTGTTTTAATCCTTGATATCTTTCCATTTTTCCACTT TCATGGGCTGGTAATGCGGGTCAATCCTCTTGCCCCATTTTCAACTCACCTTAAATGTGGATGGGTTGACATAATAACAA AAGTTGAACCGTTGGCACACTTGAAAAAATATAAAGAAAACAATGTGTGGGTAAAAAATTGACATATTAATGCGTC
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0277100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAAGAGCGACAAGAAGCCATCATCGTTGCAGGATCTCATTGAGAATGCACCTGGAGGTTGTGCTGTTACCGATGGAGG GTTCGCTACACAGCTTGAAAAACATGGAGCTTCTTTCACTGATCCTCTTTGGAGCGCCGTTTGTTTGATCAAAGACCCCC ATCTTATCAAGAAGGTTCATTTGGAATATTTGGAGGCTGGTGCAAATATATTGGTTACCTCATCTTACCAGGCTACACTG CCTGGATTTTTGGCAAGGGGGCTGTCCATTGAAGAAGGGGAGATGCTGCTAAAGAGGAGTGTGAAATTGGCAGTTGAAGC CCGGGATAGTTTCTGGAATTTTTCTAAAAGAAATCCTAGTAATAAATATAGACAGGCTTTGGTTGCAGCCTCCATTGGAA GCTATGGGGCTTACCTTGCTGATGGCTCAGAATACAGGGGATTGTATGGACCAGATGTGACTTTGGAGAAGTTGAAGGAT TTTCATCGCCGCAGATTGCAAGTTCTTGTTGAAGCTGGTCCAGATTTGCTTGCTTTTGAGACAATTCCAAACAAAATTGA AGCTCAGGCTTTAGTAGAATTGCTTGAAGAAGAAAATGTACAAATCCCATCTTGGATCTGCTTCACCTCTGTAGATGGTG AAAATGCTCCCTCAGGAGAGAGTTTCAAGGATTGTCTTGAAGCAATAAATAAGAGTGACAAAGTAGGTGCGGTTGGTATA AACTGTGCACCACCCCATTTTATGGAAAATCTGATATGCAAATTTAAGCAGTTGACAAAGAAGGCAATCATTGTATATCC CAATAGTGGAGAAGTATGGGATGGTAGAGCCAAGAAATGGCTACCATCTAAGTGTTTTCACGATGAAGATTTTGGATTTC ATGCGACAAGATGGCGTGATTTGGGTGCTAAAATTATAGGAGGTTGTTGCAGGACTACACCCTCCACCATTCAAGTTATT TCAAATGCTTTAAGAGAAGAATCTTAG
Download CDS Sequence

Protein sequence (LotjaGi2g1v0277100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MKSDKKPSSLQDLIENAPGGCAVTDGGFATQLEKHGASFTDPLWSAVCLIKDPHLIKKVHLEYLEAGANILVTSSYQATL PGFLARGLSIEEGEMLLKRSVKLAVEARDSFWNFSKRNPSNKYRQALVAASIGSYGAYLADGSEYRGLYGPDVTLEKLKD FHRRRLQVLVEAGPDLLAFETIPNKIEAQALVELLEEENVQIPSWICFTSVDGENAPSGESFKDCLEAINKSDKVGAVGI NCAPPHFMENLICKFKQLTKKAIIVYPNSGEVWDGRAKKWLPSKCFHDEDFGFHATRWRDLGAKIIGGCCRTTPSTIQVI SNALREES
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR46015
4 326 323 3.3E-183 –
PANTHER
PTHR46015:SF7
4 326 323 3.3E-183 –
PIRSF
PIRSF037505
9 242 234 1.5E-7
IPR017226
Gene3D
G3DSA:3.20.20.330
9 323 315 2.5E-100
IPR036589
ProSiteProfiles
PS50970
10 324 315 47.852
IPR003726
SUPERFAMILY
SSF82282
13 326 314 2.09E-82
IPR036589
Pfam
PF02574
23 323 301 3.3E-75
IPR003726
PIRSF
PIRSF037505
282 328 47 0.53
IPR017226

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of
GO:0009086
Biological process Methionine biosynthetic process The chemical reactions and pathways resulting in the formation of methionine (2-amino-4-(methylthio)butanoic acid), a sulfur-containing, essential amino acid found in peptide linkage in proteins.
Subterm of
GO:0047150
Molecular function Betaine-homocysteine S-methyltransferase activity Catalysis of the reaction: L-homocysteine + betaine = N,N-dimethylglycine + L-methionine.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0277100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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