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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0277400 |
| Transcript ID | LotjaGi2g1v0277400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Fiber protein Fb34; TAIR: AT1G13380.1 sodium/hydrogen exchanger (DUF1218); Swiss-Prot: sp|P0C261|YM057_YEAST Putative uncharacterized membrane protein YML057C-A; TrEMBL-Plants: tr|G7JX88|G7JX88_MEDTR Fiber protein Fb34; Found in the gene: LotjaGi2g1v0277400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:74903489..74907549) extracted from Lotus japonicus Gifu genome v1.2.
CACAGTCACATTAACATTAAACATTAGACGGCGAATAAAATAAATAAAGTAGAACAAGAAACTAGTCACTTCGTTCGTTC ACACTTTCTTTTTCTCACACTTTCCTTGTTTCACTGTCTTCCACTCCACTCAGTAACTAACTAGTGGAAGCTCTCACAGT CGCGGCGGCTAGGGATGGCCGAGGGAAGAGGCTCCACTCTCGTCCACCTTTTGGCGGTGGTTTTGTGCTTGGTTGCATTT GGTTTCGCCGTTGCCGCCGAGCGAAGACGAAGCGTCGTAAGCCACTTCTCTCTCTTTTTTATTCAACTTTCATAGCTAAG CTTCTTTTGGTCACTTGTTGTTTGTCTTTCTTCAAACACATGATTGATTGCATCATAGCTTTACAATTTCATGTAGATCT ATGTGAATGTGATAAGAAAAATGCTAGCTAGGCTTATTTTGGTTTTATTCAACTTGTTTGGAAACAATGGTTTGGTGGTA TAAGAGAATTGAAATCAGGAGAATGTTTAACCTAGATACTTCTGCAAATGTAGCATTCCATACATAGCAATACCATTCTG AATTTCATTTGTTCTTCTTCACTTTCCAGTTTATCAAAATTTTGTTACAGGTGAAAAATTGACATGTGGTTGTTAAATTT CCTTTTCATGTTCGAACGACGGAAAGAGATTTGTTTACTACATCCTCATATGCATTTACCCCTGCTGTCTTCCCCGAAGA AGATGGAATCAATGGTTTTTTTTACCTTTGGTGTTACTGAATCATAAAATCGATATCTAGTTTGCATTGGTAGTGAAGCT TGCAAAACTAGTTTCAAAAATAAAAGAAGCGTGCAAAACTCTAGGTGCTAGATTAGATAAAAATGCTGGACTTTCTGCGT ATTCATTTCAGTAACACCATTCATTTGTGTCATTGAAAATGCCAAAGCTGATTCTCTGCAATCCTACATTGGCTTTAAGG AGGTAGCTAGGTACAGAGCATATGATTTATTCATCACATCTTTCTGGTTGAATTCATAAATGAATGCTAGCTGTACAGAA AAACATTTAGGTGAATCTAAAACATGTATTATGCAGCAAGAATTTGGATATTCTTGCTGTCCAAATGGATCATACTCTCA CAAAATTTCGAGTAGTTGGGTAAATTTTATTCAGTCTGTCATTATGATTCAGATCAGCTATGTGTTGTGTCTGATAAGAA CTAAAGTTTTAGTTGATTAATTAATTCATCATGCCACAATACATGACTTGAGCCCACTTACAGCTGTGTATTGGAAAACA AGATAAGAAGACACTTGACTGCTGGTCCTAGCCTTTATCTTTAATTCTAATATTCAGTAGATAAGCATTATCTTTTCCAA TCTACACTGTATGGCTCCATTTGAAAGGATGTTGAGTGTTTCCAAGTGCTGCACTGCAACATCAACGAGGACCTTGTCTT CAAGGTCCAACAATTATCAGAGTTCTGCCTTGTGATTTTTGGAAAGCTCGCGTCTCCTAAAGCTTCATTTCTGTGAATGG ATTGTAGCTGCATACAACTGTGTCAGGACTCAGGAGTAATGTTTTCTTCCTGATTGAAACATAGCCTTGCCTTTTCAGTG TTTGTACCCGTGAGTTTCTTTAATTTGGAAGCTTCATTTGTGTGATTGTGAGCTTGAGGCGGGGTTTGAGAATTGGATTG CATGTAATTGCTGCGATTATTGCTCATCATACATCCTTTCCAACTCAATAGCCACCAGTTAATGATTTTACTGGCAATCT CATTGTTGAGACTTGAGACCCCCATTAAAGCCCATTAAAGCACCCATAACCATAAGAGCCCTTTTCTGGCGACACATGCA AATAATATCCTAGTTGATAAAAAAAAAACATTTTTTAATAGGATACACGGGTTGCACGAGTACCAGTGTCAAGAAGTGTG TCTGACATCCAAAACCTAAAGAAGTGTCTATGCTTCATAGTTCATAGGTGTTAAATGATGAATTCAGTGAGGTGTTCACA GATGGCATTCTGTAAGGGAGATTTAACATCTTTTTTTGTGGTTCCATTCTGGATGGGTAATGCTTGCTTATCTTTGATGG CTTGTTGTAAACAACTATCCTTCTCAAAGGCAATGCATTTCGTGTAAAAGAAACGGAAAAGTACTCTTGCAGAGATCATT TTTGGTGTCATGATTCCAGGGAAAGATTTTCATACACTCATCAGAAGTGAAAGAAATAATATGTAACAGGACGATGATTA GCTTGATTGTGTAATTAAGTTTGTGGTATGACAGCAGTGAGTGAAACTAGAATTGTCCAGGGTTCTTTCTTTATGACCTT ATAAAGCATAGCTACATATGCATAAGGAAGTCTACACTCATTGTTTTGACTGCATATGCCTCCCCTATCCTTCAGTTAAT ATTTAGCAGACAATTATGATATAATGTTCAGTGCCTATGTTTACTTGTTATTAATATTCTTATTAATTTGCACTAACTTG TCTCCTTTTCTGTGTTCTTGCTTGACAGGGAACTATGTACCAAGTTGAAGGGAAAAATGAAACATACTGTGTCTACAGTT CAGATGTTGCAACTGGTTATGGAGTGGGAGCTTTTCTGTTTCTTCTTTCAAGTGAATCGCTGCTTATGGGAGTAACAAAA TGCATGTGCTTCGGCAGGCCTTTAACACCTGGGGGAAATCGAGCGTGGTCCATTATATATTTTATGTCTTCTTGGTAAGA ATTCTGGATTCATACACAACAATTTCTGTTTCAGCTGATCACTGATTTTGAATAAGCCAAATTGTTGTGGTAAGAATGAT GCTTTTTCTGATGTCTACTTGTTCATGACTCAAGTAGTTATTGTATGGTTTTCATTATTTTTGTCATCTCTAATGGTTTA ATTGATTGATTTATGCATAATCCCTGGACCCTTTTGCTATAGATTTGCTTTAAGGAAACTCTAACTTGGAAATGTTACTT ATAGAATGCAACATGATTGTGGTGGATCTATAAGATCGTTCATTCTCTGTACTAGTGAATTGCTTGAGCTTCAGCTGTTA CATTTTATGTTTTCCCAGGGCCACTTTTCTGGTCGCAGAGTCATGTTTGATAGCAGGTGCAACGAAGAATGCCTATCACA CCAAATACCGGGGAATGATTTATGCGCAGAACTTCTCCTGTGAATCCTTGAGGAAAGGTATCTTCGTTACTGCAGCAGTT TTCATTGTTGCGACCATGATTCTTAACGTATACTACTACATGTACTTCACAAAGGCAACAACTACACCACTTTCTCAGAA GGCAAATCGGGTGAGCTCCACAGTTGGAATGACAGGATATGCATGATGGGCGATGGACGAAATGTTAACAGATTTAGAAT CTCCAATCTTCATTTCAACGAATGTCTCTAGGGTCGTCAGTACTTTGAAAAACTGTGGTGTTGAGTTTGTTTTTACTTGG TTAACTAGTGTTGTTCCAGTGGATATTACTGGTCAGGGGCAGGCTATAGCTATATATATATATCAAAGGAGTAGGTAAAA AGGGTCTTTTAAGTAGTAATTTGGTGGAAGCATGTTATCAGTTTTTAGGTAAACATCATCATATTGGAGGTGTGTAAAAT GTTTCAGCCTATGTTTCAGCAATATGAAATGCATGAAAATTACGGAACCCCATACACACATTTTGTTTGCAAATATCTTC CAATTGAGTTCTATGAATTTCCCTTTCACCATTTTTTACTGCCCCATTAGAATTTACTAATCATCTCTTAAATGTGTTCA CATAATCTGAGAGAAAGCATGGAGCAGCTCATAATATATGTGGGGACCAATTGAGGCTTAATCAAAACTCTTCAACTTGC TTGAGATAAGAATTTTGGTTTCCATAATTTGAGCTTTTTTTCTAACAAAATCAAAGATTTCACATTTGGATCTTCTCACA AATATTGGGAGGCCCAAATATTTGAACATCTCTCCTTGGTTTAAACTTAGATCCGATCTTGAATCGATGTTTGTTTTGTT TGTTTACTTGCACGTTTTGACTAAACTAGATTTCTGAATTTGTGAATGGAGAATATCTAAG
CDS sequence (LotjaGi2g1v0277400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCGAGGGAAGAGGCTCCACTCTCGTCCACCTTTTGGCGGTGGTTTTGTGCTTGGTTGCATTTGGTTTCGCCGTTGC CGCCGAGCGAAGACGAAGCGTCGGAACTATGTACCAAGTTGAAGGGAAAAATGAAACATACTGTGTCTACAGTTCAGATG TTGCAACTGGTTATGGAGTGGGAGCTTTTCTGTTTCTTCTTTCAAGTGAATCGCTGCTTATGGGAGTAACAAAATGCATG TGCTTCGGCAGGCCTTTAACACCTGGGGGAAATCGAGCGTGGTCCATTATATATTTTATGTCTTCTTGGGCCACTTTTCT GGTCGCAGAGTCATGTTTGATAGCAGGTGCAACGAAGAATGCCTATCACACCAAATACCGGGGAATGATTTATGCGCAGA ACTTCTCCTGTGAATCCTTGAGGAAAGGTATCTTCGTTACTGCAGCAGTTTTCATTGTTGCGACCATGATTCTTAACGTA TACTACTACATGTACTTCACAAAGGCAACAACTACACCACTTTCTCAGAAGGCAAATCGGGTGAGCTCCACAGTTGGAAT GACAGGATATGCATGA
Protein sequence (LotjaGi2g1v0277400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEGRGSTLVHLLAVVLCLVAFGFAVAAERRRSVGTMYQVEGKNETYCVYSSDVATGYGVGAFLFLLSSESLLMGVTKCM CFGRPLTPGGNRAWSIIYFMSSWATFLVAESCLIAGATKNAYHTKYRGMIYAQNFSCESLRKGIFVTAAVFIVATMILNV YYYMYFTKATTTPLSQKANRVSSTVGMTGYA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 189 | 189 | 1.3E-101 | – | |
| SignalP_EUK | 1 | 27 | 27 | - | – | |
| PANTHER | 1 | 189 | 189 | 1.3E-101 | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| Phobius | 6 | 27 | 22 | - | – | |
| TMHMM | 9 | 28 | 20 | - | – | |
| Phobius | 28 | 46 | 19 | - | – | |
| Phobius | 47 | 67 | 21 | - | – | |
| TMHMM | 54 | 76 | 23 | - | – | |
| Pfam | 62 | 157 | 96 | 9.1E-22 | ||
| Phobius | 68 | 95 | 28 | - | – | |
| TMHMM | 96 | 118 | 23 | - | – | |
| Phobius | 96 | 122 | 27 | - | – | |
| Phobius | 123 | 142 | 20 | - | – | |
| Phobius | 143 | 164 | 22 | - | – | |
| TMHMM | 144 | 166 | 23 | - | – | |
| Phobius | 165 | 191 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0277400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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