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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0281000 |
| Transcript ID | LotjaGi2g1v0281000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Photosystem II protein D1; TAIR: ATCG00020.1 photosystem II reaction center protein A (ChrC); Swiss-Prot: sp|Q9BBU3|PSBA_LOTJA Photosystem II protein D1; TrEMBL-Plants: tr|A0A0Y0UFS2|A0A0Y0UFS2_9FABA Photosystem II protein D1; Found in the gene: LotjaGi2g1v0281000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:75269407..75270468) extracted from Lotus japonicus Gifu genome v1.2.
ATGACTGCAATTTTAGAGAGACGCGAGAGCGAAAACCTATGGGGTCGCTTCTGTAACTGGATAACTAGCACTGAAAACCG TCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATCGCTTTCATTG CTGCCCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAATATCATTTCTGGT GCCATTATTCCTACTTCTGCGGCTATCGGTTTGCACTTTTACCCGATCTGGGAAGCAGCATCTGTTGATGAATGGTTATA CAATGGCGGTCCTTATGAACTAATTGTTCTACATTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTA GTTTTCGTCTAGGTATGCGCACTTGGATTGCTGTTGCATATTCAGCTTCTGTTGCAGCCGCTACTGCTGTTTTCTTGATC TATCCGATTGGTCAAGGAAGCTTTTCTAACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATAGTATTTCA GGCTGAGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTA TGCACGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGT CAAGAGGAAGAAACCTATAATATTGTAGCTGCTCACAGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAA CTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTTGTAGGTATCTGGTTTACTGCGTTAGGTATCAGCACTATGG CTTTCAATTTGAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAACACCTGGGCTGATATT ATTAACCGAGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCGGTCGA GGCTCCATCTATAAATGGATAA
CDS sequence (LotjaGi2g1v0281000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTGCAATTTTAGAGAGACGCGAGAGCGAAAACCTATGGGGTCGCTTCTGTAACTGGATAACTAGCACTGAAAACCG TCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATCGCTTTCATTG CTGCCCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAATATCATTTCTGGT GCCATTATTCCTACTTCTGCGGCTATCGGTTTGCACTTTTACCCGATCTGGGAAGCAGCATCTGTTGATGAATGGTTATA CAATGGCGGTCCTTATGAACTAATTGTTCTACATTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTA GTTTTCGTCTAGGTATGCGCACTTGGATTGCTGTTGCATATTCAGCTTCTGTTGCAGCCGCTACTGCTGTTTTCTTGATC TATCCGATTGGTCAAGGAAGCTTTTCTAACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATAGTATTTCA GGCTGAGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTA TGCACGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGT CAAGAGGAAGAAACCTATAATATTGTAGCTGCTCACAGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAA CTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTTGTAGGTATCTGGTTTACTGCGTTAGGTATCAGCACTATGG CTTTCAATTTGAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAACACCTGGGCTGATATT ATTAACCGAGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCGGTCGA GGCTCCATCTATAAATGGATAA
Protein sequence (LotjaGi2g1v0281000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTAILERRESENLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISG AIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRTWIAVAYSASVAAATAVFLI YPIGQGSFSNGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFG QEEETYNIVAAHSYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWADI INRANLGMEVMHERNAHNFPLDLAAVEAPSING
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 28 | 28 | - | – | |
| PANTHER | 1 | 351 | 351 | 1.1E-227 | ||
| TIGRFAM | 1 | 351 | 351 | 1.5E-234 | ||
| Hamap | 1 | 347 | 347 | 58.7 | ||
| PANTHER | 1 | 351 | 351 | 1.1E-227 | – | |
| CDD | 7 | 344 | 338 | 0.0 | ||
| SUPERFAMILY | 12 | 343 | 332 | 8.9E-145 | ||
| Pfam | 28 | 327 | 300 | 5.3E-97 | ||
| Phobius | 29 | 55 | 27 | - | – | |
| TMHMM | 29 | 51 | 23 | - | – | |
| Phobius | 56 | 75 | 20 | - | – | |
| TMHMM | 71 | 93 | 23 | - | – | |
| Phobius | 76 | 97 | 22 | - | – | |
| Phobius | 98 | 108 | 11 | - | – | |
| TMHMM | 105 | 127 | 23 | - | – | |
| PRINTS | 109 | 137 | 29 | 7.1E-7 | ||
| Phobius | 109 | 129 | 21 | - | – | |
| Phobius | 130 | 140 | 11 | - | – | |
| Gene3D | 141 | 298 | 158 | 2.8E-25 | ||
| Phobius | 141 | 161 | 21 | - | – | |
| TMHMM | 142 | 161 | 20 | - | – | |
| PRINTS | 142 | 164 | 23 | 7.1E-7 | ||
| Phobius | 162 | 166 | 5 | - | – | |
| Phobius | 167 | 186 | 20 | - | – | |
| TMHMM | 168 | 187 | 20 | - | – | |
| Phobius | 187 | 197 | 11 | - | – | |
| ProSitePatterns | 191 | 217 | 27 | - | ||
| TMHMM | 197 | 219 | 23 | - | – | |
| PRINTS | 197 | 223 | 27 | 7.1E-7 | ||
| Phobius | 198 | 218 | 21 | - | – | |
| Phobius | 219 | 272 | 54 | - | – | |
| TMHMM | 273 | 295 | 23 | - | – | |
| Phobius | 273 | 295 | 23 | - | – | |
| Phobius | 296 | 353 | 58 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Electron transfer activity | Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient. | ||
| Biological process | Photosynthetic electron transport in photosystem II | A photosynthetic electron transport chain in which electrons move from the primary electron acceptor (Quinone, Q) through a chain of electron transport molecules in the thylakoid membrane until they reach the ultimate electron acceptor of Photosystem II, which is plastocyanin (PC). The electron is then passed to the P700 chlorophyll a molecules of the reaction centre of photosystem I. | ||
| Biological process | Photosynthesis, light reaction | The light reactions of photosynthesis, which take place in photosystems II and I. Light energy is harvested and used to power the transfer of electrons among a series of electron donors and acceptors. The final electron acceptor is NADP+, which is reduced to NADPH. NADPH generated from light reactions is used in sugar synthesis in dark reactions. Light reactions also generate a proton motive force across the thylakoid membrane, and the proton gradient is used to synthesize ATP. There are two chemical reactions involved in the light reactions: water oxidation in photosystem II, and NADP reduction in photosystem I. | ||
| Molecular function | Electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | Enables the directed movement of electrons within the cyclic electron transport pathway of photosynthesis. |
Expression pattern of LotjaGi2g1v0281000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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