Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0281800 |
| Transcript ID | LotjaGi2g1v0281800.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Basic helix-loop-helix transcription factor; TAIR: AT1G68810.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9S7Y1|BH030_ARATH Transcription factor bHLH30; TrEMBL-Plants: tr|C0JP31|C0JP31_LOTJA Putative basic helix-loop-helix protein BHLH25; Found in the gene: LotjaGi2g1v0281800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:75430311..75434031) extracted from Lotus japonicus Gifu genome v1.2.
GCAGAAAGCAAAGAGCTGCAAGAATAAAATAAAACAAAACCAAAAAGACAACACAAACAAGGCTTAAAGGAAGAGGAAAG GTTCTATTGGCAAAGGATAAAAACACTCATCACCTCACCCTCCTCCTCCACAAACATATAAACCTACCAAGTGAAAGAGA TTTGAGATTGAAGAAGATCCAAAGTGTTGGCCTTTTCTTTTACACCACACCCACCACCACAAGAGAAAGACCATAGTTCC TCGAGAATCATATCAAAGCAAGGTTTGTTCTTTCTCCCCCTTTTCTCAACCAAACTTACCCTTTTTCCTTTCAGTTAACA CTTTTCTTAGTCATAACAGACAAAAAATAAAAGAGAAAGAGAAGAGTTGCAAAGCTAGCACACCTCACTTTTCTGACATT TGAACCTCAAAAATTTCATTCTCTTTTTCAGATCAGGATATTCTTCTTCTATAGTATATATAGAAAGCTATAGAGTTTGG ATTTTACAAATGCTTAGATGAAAAAGGAAGAAGATCAAGGGCAGTGTTCTTCTCAAGCAATCAACAATAACATTCAAAGC TATCATCAAGAGCAGCTACTCTTTCAGCAACAGATGCAGCAACAGCAAAACTTTGATAACATCTTTGGAGGTGGAAGAGG TTTAAATATGTTCCCAGAAGTTCCATGGTCCATGAACCCGGTTCATTCTTTCAACCCGGTTCGGGACCATGAACCTTCAT CATTTATTGTCCCTCCACCACCTTCACCTTATGCTGGTTTCTTCAACAGAAGGGTTCCATCCCTTCAGTTTGCATATGAG GGTCCCTCTTCTGACCATCATCTAAGGATCATATCTGATGCACTGGTTGGACCCATGGTTCAAACCGGTTCAGTTCCCTA CGGGCTCCAAGCTGAGCTGGGGAAGATGACTGCTCAGGAAATCATGGAGGCTAAGGCTCTTGCAGCTTCCAAGAGCCACA GTGAGGCTGAAAGGAGGCGCAGAGAGAGAATCAACAACCATCTTGCTAAGTTGAGAAGCTTGTTGCCAAACACAACCAAA GTAAGTGTACTTAGTGACTTAAATTCTGTCCAAACTCACTAATAGCACGTTTGAATCGGCTTCTGGTAGTCAGAAACTAC TCACATCATCTTCTCAAAATTAATTTTGACTGCAAAATCTATTTTTGAAGGTTTTCTAAACATGAATTATAGTTCTTATT AATAAACATGATTAACCATGTCATGTCTAATGAAAAAAAAGTAAGAGAAAAAAATTAAATTTAGTATAAGATCATACCTA AGATATGTTGTGTATAATAAAAGTGTATTCAAAGGAGTATATATACTACTATTTTTTCATGGAGCTTTTGAATTACAAGA GTGCTTTGTAAATCTTGTTAAGATTTTGTTCTATCCATTATTTTAGTCTGATTCATAAAACCACAACTGAAACTCTTATA TCTTTCGATCAGAAAATCTGGTTTGTTCACTACACATTGCTTTTTCTTCTTCTTCTTCTTGTTTCTTTTGGAGCCCCTCT GAGAGTGTGGTAGTTCCGAGGAGGTTGTTACTAGAAAAAGCAACAGCATTTTTCGTCACTCGGTTGATGACACGAGAGAC AGGAACGAAAGGAGGAAGCTGAAAAGTTACACATGGGAATTTTGTGTTGATAGCACATTGATCAGTCAAACTCAGCTTGA TAATGAAAAAGAAATAAAGAAACAAAAGCCAGCAGCAGAGAGACAAACTAGCACCCTTGTCAGTCACACACACACGCACT ATATATATCTCAATATCTCATCTCATATCATAACACACTGCATGCCACTAAAAAGAACACTAGTTCTAGTCCTTAATCAT CAACCTATTTAACCTACCTACCTCATAAACATCTACACAAACCCCATCATTTTGTTTGACTCACAATGCACAATTTCCAA GCTTTACCATTAGTTCTAAGCAAGGTTTTAAATTATGGTAGACCTAAAGTTACAAGTAATGATTCGTGGAAGTCTTTGAT AACACAAACACTCAACAAACATATAAAGTGAGAAATGAAGAAATGACGAGAAGAGAGAAATAAGGAACATAATTAACACA GAAAAGTTGTTATATGGGAGTGTCTATATAGTATATATATTGTCTATAGTACTGTTTGAGTTTCTAAATAGTAAAGTTAT AATTATAGATGTTGCCATACATAAATTACAGACAAAATGTTACATCCAAATATATATGATGTGATGTGTTGTGTGGAAAC TCTTAGGATTTGGATTTAATGTTATTGTTTGCGCGCGCTGTAGTCCCAAATATAAATGGTCTGATTAAGATTTGAAGGAT CATGTTTTTAGCATGCATTACTATCTTATTAACAAAGATCAAGTATATATGAACTGCTCGATCTGAATTCAAAGACTCAT GTTGAGTGAGGTTATTGCGTCCAAAGAAGACAGATAAGGCTTTAAGACCTTAATAGTAACCACAGTTTAAAATCGTTATT ATATGATGTTATACTTATAGGATATTCTTTTAAAATTTATTTTTCTATTTGCGATTTTGTAGACAGATAAGGCTTCGTTG TTAGCAGAAGTGATCCAACATGTAAAGGAGCTGAAGCGACAAACTTCATTAATAGCAGAAACAAGTCCAGTGCCAACAGA AGCTGATGAGCTAACAGTGGATGCAGCTGATGAGGATGGAAGGTTTGTGATAAAAGCCTCACTGTGCTGTGAAGACAGGT CAGATCTCCTACCAGACCTCATCAAGGCACTGAAAGCATTGAGGCTAAGAACCCTCAGAGCCGAGATCTCAACGCTCGGC GGGCGTGTGAAAAACGTGCTCTTCATCACCGGGGATGATCAGGATTCAAGTGGTGAAGATCAAAGCCAACAACAGTATTG TATTAGCTCGATACAAGAAGCACTTAAGGCGGTGATGGAGAAGAATGGTGGTGGTGGGGATGAATCAGCTTCTGGGAATG TTAAGCGCCAAAGGACTAACATCAATATCATTGAACAAAGGTCTTTATGAATTTTCACAAAATTAAAGACCTATATATAG TGTTATTTGTTACACTTAATTATCATATGTTTTCTTATTTTCTTTCTTTGGTTGTTTGGGGTTTGGTTCTTTTGGTTTAT GGTGTGGTGAAAATATTATTATCATCATGATGAAGCAATGAGGTAATGAGATGATGTGGGGTTTTGTACATGTACTTGTT GGTTGAGGGTAAGGATCTTTTTCGTGGGAAGAGAAACCTTATATCAAATATCCTAACATGGAAAATGAGGCATTGAATTC ATTGCTGATCTTAAATTGTGTGTGTTATGTTTAGTTTTGAAGTTTTGTTGTTGGATCGGAGCTAGCAATTGCTGGGTTTA AATTCTGTCGACTGAGCTAGCAGAGTTCATATTCCGTGCATGGCATTATGATGATCGATGATGATGATTAACGACACTAG CTAGCTACGTGATGGTGACGACGCAGTTCACGTCATGTGCTAGCTGCGTCCCTACACGGCCAGTGCTATAACAACCACCA TCACCACCTTCTCACTTTGTTCTTGTATGTGTTGTGTTGTGTGAGTGGATCTGGAATGAACCAAAGATACTCAAACATAT AAACAATCTACTAGATATTTTCATTTTCTGTTAGTGTGTTTGGATAAGTGTTAGCAGAATTGGATCTAGCTACAATTTGA TCCGGTCAGAATTTGATATGGTAACGTAAGTTTAAGTGACG
CDS sequence (LotjaGi2g1v0281800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAAAGGAAGAAGATCAAGGGCAGTGTTCTTCTCAAGCAATCAACAATAACATTCAAAGCTATCATCAAGAGCAGCT ACTCTTTCAGCAACAGATGCAGCAACAGCAAAACTTTGATAACATCTTTGGAGGTGGAAGAGGTTTAAATATGTTCCCAG AAGTTCCATGGTCCATGAACCCGGTTCATTCTTTCAACCCGGTTCGGGACCATGAACCTTCATCATTTATTGTCCCTCCA CCACCTTCACCTTATGCTGGTTTCTTCAACAGAAGGGTTCCATCCCTTCAGTTTGCATATGAGGGTCCCTCTTCTGACCA TCATCTAAGGATCATATCTGATGCACTGGTTGGACCCATGGTTCAAACCGGTTCAGTTCCCTACGGGCTCCAAGCTGAGC TGGGGAAGATGACTGCTCAGGAAATCATGGAGGCTAAGGCTCTTGCAGCTTCCAAGAGCCACAGTGAGGCTGAAAGGAGG CGCAGAGAGAGAATCAACAACCATCTTGCTAAGTTGAGAAGCTTGTTGCCAAACACAACCAAAACAGATAAGGCTTCGTT GTTAGCAGAAGTGATCCAACATGTAAAGGAGCTGAAGCGACAAACTTCATTAATAGCAGAAACAAGTCCAGTGCCAACAG AAGCTGATGAGCTAACAGTGGATGCAGCTGATGAGGATGGAAGGTTTGTGATAAAAGCCTCACTGTGCTGTGAAGACAGG TCAGATCTCCTACCAGACCTCATCAAGGCACTGAAAGCATTGAGGCTAAGAACCCTCAGAGCCGAGATCTCAACGCTCGG CGGGCGTGTGAAAAACGTGCTCTTCATCACCGGGGATGATCAGGATTCAAGTGGTGAAGATCAAAGCCAACAACAGTATT GTATTAGCTCGATACAAGAAGCACTTAAGGCGGTGATGGAGAAGAATGGTGGTGGTGGGGATGAATCAGCTTCTGGGAAT GTTAAGCGCCAAAGGACTAACATCAATATCATTGAACAAAGGTCTTTATGA
Protein sequence (LotjaGi2g1v0281800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKKEEDQGQCSSQAINNNIQSYHQEQLLFQQQMQQQQNFDNIFGGGRGLNMFPEVPWSMNPVHSFNPVRDHEPSSFIVPP PPSPYAGFFNRRVPSLQFAYEGPSSDHHLRIISDALVGPMVQTGSVPYGLQAELGKMTAQEIMEAKALAASKSHSEAERR RRERINNHLAKLRSLLPNTTKTDKASLLAEVIQHVKELKRQTSLIAETSPVPTEADELTVDAADEDGRFVIKASLCCEDR SDLLPDLIKALKALRLRTLRAEISTLGGRVKNVLFITGDDQDSSGEDQSQQQYCISSIQEALKAVMEKNGGGGDESASGN VKRQRTNINIIEQRSL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 66 | 331 | 266 | 1.2E-136 | – | |
| PANTHER | 66 | 331 | 266 | 1.2E-136 | – | |
| Gene3D | 143 | 207 | 65 | 5.6E-16 | ||
| ProSiteProfiles | 149 | 198 | 50 | 17.136 | ||
| Pfam | 152 | 199 | 48 | 2.4E-12 | ||
| SUPERFAMILY | 153 | 205 | 53 | 7.07E-15 | ||
| SMART | 155 | 204 | 50 | 4.6E-13 | ||
| CDD | 162 | 201 | 40 | 1.17343E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi2g1v0281800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…