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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0281800 |
| Transcript ID | LotjaGi2g1v0281800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Basic helix-loop-helix transcription factor; TAIR: AT1G68810.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9S7Y1|BH030_ARATH Transcription factor bHLH30; TrEMBL-Plants: tr|C0JP31|C0JP31_LOTJA Putative basic helix-loop-helix protein BHLH25; Found in the gene: LotjaGi2g1v0281800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:75430479..75434061) extracted from Lotus japonicus Gifu genome v1.2.
CTCAAACAGCTCTATACAATTTTAAAGGCTGCAGAAAGCAAAGAGCTGCAAGAATAAAATAAAACAAAACCAAAAAGACA ACACAAACAAGGCTTAAAGGAAGAGGAAAGGTTCTATTGGCAAAGGATAAAAACACTCATCACCTCACCCTCCTCCTCCA CAAACATATAAACCTACCAAGTGAAAGAGATTTGAGATTGAAGAAGATCCAAAGTGTTGGCCTTTTCTTTTACACCACAC CCACCACCACAAGAGAAAGACCATAGTTCCTCGAGAATCATATCAAAGCAAGGTTTGTTCTTTCTCCCCCTTTTCTCAAC CAAACTTACCCTTTTTCCTTTCAGTTAACACTTTTCTTAGTCATAACAGACAAAAAATAAAAGAGAAAGAGAAGAGTTGC AAAGCTAGCACACCTCACTTTTCTGACATTTGAACCTCAAAAATTTCATTCTCTTTTTCAGATCAGGATATTCTTCTTCT ATAGTATATATAGAAAGCTATAGAGTTTGGATTTTACAAATGCTTAGATGAAAAAGGAAGAAGATCAAGGGCAGTGTTCT TCTCAAGCAATCAACAATAACATTCAAAGCTATCATCAAGAGCAGCTACTCTTTCAGCAACAGATGCAGCAACAGCAAAA CTTTGATAACATCTTTGGAGGTGGAAGAGGTTTAAATATGTTCCCAGAAGTTCCATGGTCCATGAACCCGGTTCATTCTT TCAACCCGGTTCGGGACCATGAACCTTCATCATTTATTGTCCCTCCACCACCTTCACCTTATGCTGGTTTCTTCAACAGA AGGGTTCCATCCCTTCAGTTTGCATATGAGGGTCCCTCTTCTGACCATCATCTAAGGATCATATCTGATGCACTGGTTGG ACCCATGGTTCAAACCGGTTCAGTTCCCTACGGGCTCCAAGCTGAGCTGGGGAAGATGACTGCTCAGGAAATCATGGAGG CTAAGGCTCTTGCAGCTTCCAAGAGCCACAGTGAGGCTGAAAGGAGGCGCAGAGAGAGAATCAACAACCATCTTGCTAAG TTGAGAAGCTTGTTGCCAAACACAACCAAAGTAAGTGTACTTAGTGACTTAAATTCTGTCCAAACTCACTAATAGCACGT TTGAATCGGCTTCTGGTAGTCAGAAACTACTCACATCATCTTCTCAAAATTAATTTTGACTGCAAAATCTATTTTTGAAG GTTTTCTAAACATGAATTATAGTTCTTATTAATAAACATGATTAACCATGTCATGTCTAATGAAAAAAAAGTAAGAGAAA AAAATTAAATTTAGTATAAGATCATACCTAAGATATGTTGTGTATAATAAAAGTGTATTCAAAGGAGTATATATACTACT ATTTTTTCATGGAGCTTTTGAATTACAAGAGTGCTTTGTAAATCTTGTTAAGATTTTGTTCTATCCATTATTTTAGTCTG ATTCATAAAACCACAACTGAAACTCTTATATCTTTCGATCAGAAAATCTGGTTTGTTCACTACACATTGCTTTTTCTTCT TCTTCTTCTTGTTTCTTTTGGAGCCCCTCTGAGAGTGTGGTAGTTCCGAGGAGGTTGTTACTAGAAAAAGCAACAGCATT TTTCGTCACTCGGTTGATGACACGAGAGACAGGAACGAAAGGAGGAAGCTGAAAAGTTACACATGGGAATTTTGTGTTGA TAGCACATTGATCAGTCAAACTCAGCTTGATAATGAAAAAGAAATAAAGAAACAAAAGCCAGCAGCAGAGAGACAAACTA GCACCCTTGTCAGTCACACACACACGCACTATATATATCTCAATATCTCATCTCATATCATAACACACTGCATGCCACTA AAAAGAACACTAGTTCTAGTCCTTAATCATCAACCTATTTAACCTACCTACCTCATAAACATCTACACAAACCCCATCAT TTTGTTTGACTCACAATGCACAATTTCCAAGCTTTACCATTAGTTCTAAGCAAGGTTTTAAATTATGGTAGACCTAAAGT TACAAGTAATGATTCGTGGAAGTCTTTGATAACACAAACACTCAACAAACATATAAAGTGAGAAATGAAGAAATGACGAG AAGAGAGAAATAAGGAACATAATTAACACAGAAAAGTTGTTATATGGGAGTGTCTATATAGTATATATATTGTCTATAGT ACTGTTTGAGTTTCTAAATAGTAAAGTTATAATTATAGATGTTGCCATACATAAATTACAGACAAAATGTTACATCCAAA TATATATGATGTGATGTGTTGTGTGGAAACTCTTAGGATTTGGATTTAATGTTATTGTTTGCGCGCGCTGTAGTCCCAAA TATAAATGGTCTGATTAAGATTTGAAGGATCATGTTTTTAGCATGCATTACTATCTTATTAACAAAGATCAAGTATATAT GAACTGCTCGATCTGAATTCAAAGACTCATGTTGAGTGAGGTTATTGCGTCCAAAGAAGACAGATAAGGCTTTAAGACCT TAATAGTAACCACAGTTTAAAATCGTTATTATATGATGTTATACTTATAGGATATTCTTTTAAAATTTATTTTTCTATTT GCGATTTTGTAGACAGATAAGGCTTCGTTGTTAGCAGAAGTGATCCAACATGTAAAGGAGCTGAAGCGACAAACTTCATT AATAGCAGAAACAAGTCCAGTGCCAACAGAAGCTGATGAGCTAACAGTGGATGCAGCTGATGAGGATGGAAGGTTTGTGA TAAAAGCCTCACTGTGCTGTGAAGACAGGTCAGATCTCCTACCAGACCTCATCAAGGCACTGAAAGCATTGAGGCTAAGA ACCCTCAGAGCCGAGATCTCAACGCTCGGCGGGCGTGTGAAAAACGTGCTCTTCATCACCGGGGATGATCAGGATTCAAG TGGTGAAGATCAAAGCCAACAACAGTATTGTATTAGCTCGATACAAGAAGCACTTAAGGCGGTGATGGAGAAGAATGGTG GTGGTGGGGATGAATCAGCTTCTGGGAATGTTAAGCGCCAAAGGACTAACATCAATATCATTGAACAAAGGTCTTTATGA ATTTTCACAAAATTAAAGACCTATATATAGTGTTATTTGTTACACTTAATTATCATATGTTTTCTTATTTTCTTTCTTTG GTTGTTTGGGGTTTGGTTCTTTTGGTTTATGGTGTGGTGAAAATATTATTATCATCATGATGAAGCAATGAGGTAATGAG ATGATGTGGGGTTTTGTACATGTACTTGTTGGTTGAGGGTAAGGATCTTTTTCGTGGGAAGAGAAACCTTATATCAAATA TCCTAACATGGAAAATGAGGCATTGAATTCATTGCTGATCTTAAATTGTGTGTGTTATGTTTAGTTTTGAAGTTTTGTTG TTGGATCGGAGCTAGCAATTGCTGGGTTTAAATTCTGTCGACTGAGCTAGCAGAGTTCATATTCCGTGCATGGCATTATG ATGATCGATGATGATGATTAACGACACTAGCTAGCTACGTGATGGTGACGACGCAGTTCACGTCATGTGCTAGCTGCGTC CCTACACGGCCAGTGCTATAACAACCACCATCACCACCTTCTCACTTTGTTCTTGTATGTGTT
CDS sequence (LotjaGi2g1v0281800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAAAGGAAGAAGATCAAGGGCAGTGTTCTTCTCAAGCAATCAACAATAACATTCAAAGCTATCATCAAGAGCAGCT ACTCTTTCAGCAACAGATGCAGCAACAGCAAAACTTTGATAACATCTTTGGAGGTGGAAGAGGTTTAAATATGTTCCCAG AAGTTCCATGGTCCATGAACCCGGTTCATTCTTTCAACCCGGTTCGGGACCATGAACCTTCATCATTTATTGTCCCTCCA CCACCTTCACCTTATGCTGGTTTCTTCAACAGAAGGGTTCCATCCCTTCAGTTTGCATATGAGGGTCCCTCTTCTGACCA TCATCTAAGGATCATATCTGATGCACTGGTTGGACCCATGGTTCAAACCGGTTCAGTTCCCTACGGGCTCCAAGCTGAGC TGGGGAAGATGACTGCTCAGGAAATCATGGAGGCTAAGGCTCTTGCAGCTTCCAAGAGCCACAGTGAGGCTGAAAGGAGG CGCAGAGAGAGAATCAACAACCATCTTGCTAAGTTGAGAAGCTTGTTGCCAAACACAACCAAAACAGATAAGGCTTCGTT GTTAGCAGAAGTGATCCAACATGTAAAGGAGCTGAAGCGACAAACTTCATTAATAGCAGAAACAAGTCCAGTGCCAACAG AAGCTGATGAGCTAACAGTGGATGCAGCTGATGAGGATGGAAGGTTTGTGATAAAAGCCTCACTGTGCTGTGAAGACAGG TCAGATCTCCTACCAGACCTCATCAAGGCACTGAAAGCATTGAGGCTAAGAACCCTCAGAGCCGAGATCTCAACGCTCGG CGGGCGTGTGAAAAACGTGCTCTTCATCACCGGGGATGATCAGGATTCAAGTGGTGAAGATCAAAGCCAACAACAGTATT GTATTAGCTCGATACAAGAAGCACTTAAGGCGGTGATGGAGAAGAATGGTGGTGGTGGGGATGAATCAGCTTCTGGGAAT GTTAAGCGCCAAAGGACTAACATCAATATCATTGAACAAAGGTCTTTATGA
Protein sequence (LotjaGi2g1v0281800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKKEEDQGQCSSQAINNNIQSYHQEQLLFQQQMQQQQNFDNIFGGGRGLNMFPEVPWSMNPVHSFNPVRDHEPSSFIVPP PPSPYAGFFNRRVPSLQFAYEGPSSDHHLRIISDALVGPMVQTGSVPYGLQAELGKMTAQEIMEAKALAASKSHSEAERR RRERINNHLAKLRSLLPNTTKTDKASLLAEVIQHVKELKRQTSLIAETSPVPTEADELTVDAADEDGRFVIKASLCCEDR SDLLPDLIKALKALRLRTLRAEISTLGGRVKNVLFITGDDQDSSGEDQSQQQYCISSIQEALKAVMEKNGGGGDESASGN VKRQRTNINIIEQRSL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 66 | 331 | 266 | 1.2E-136 | – | |
| PANTHER | 66 | 331 | 266 | 1.2E-136 | – | |
| Gene3D | 143 | 207 | 65 | 5.6E-16 | ||
| ProSiteProfiles | 149 | 198 | 50 | 17.136 | ||
| Pfam | 152 | 199 | 48 | 2.4E-12 | ||
| SUPERFAMILY | 153 | 205 | 53 | 7.07E-15 | ||
| SMART | 155 | 204 | 50 | 4.6E-13 | ||
| CDD | 162 | 201 | 40 | 1.17343E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi2g1v0281800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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