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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0285100 |
Transcript ID | LotjaGi2g1v0285100.2 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Basic helix-loop-helix transcription factor; TAIR: AT3G24140.2 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q56YJ8|FAMA_ARATH Transcription factor FAMA; TrEMBL-Plants: tr|V7C921|V7C921_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0285100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:75807843..75811108) extracted from Lotus japonicus Gifu genome v1.2.
TCTCTCTCTCTCTCTCTCTTCTCTCTCTAGATCTCTCTCTCTCTGTCATTTTGTGTGACCACCAACAAAGTCAAATCCCA ACCCCAGCGCTCCCCACATATTATATATATCGGATCACAAAAAAACTTGAATAATAAAAACACCACTGTCCTCTTCTGGC GGTCTACTATTGTAGGGTACACTGCCTTTCATGGTTCTGTTCTAACTCTACTACACAAGTCCCAACTTCACTTTCACCCT TGTCTCCTTCCCTCACTCCACAACACAGGTTTGATTTCTAACTCTTTCATTTACTTATTATTGCATGTACATATATATGA TTAATCTCTTATGATGAGTTCATATAGATTCAAGCCATATGAGCTGCAATTAAAAACTGCCGCTAACACATATGTCAATT TTTATGTCACTTGAATCAGTATGTCCGATAATCATTTACATTCTCTTGTATATACATAAGATATAAGGACTAATTTTATG ATTTTTTTCTCACACTCAGTGATTTAATTTAATTAACATGATGTTTGATGTTTAACTAGCTAGTAGATTTACAAATACTA CTAGTTCAGGTGGAGGGCCCTCAAGTGAAAGGTTTTGTCTTACACCAAGGGAGGGTGTGGTAGGATTTGTTTCCATTAAA GTCAACTTCTTTATAAGATAACAATAATGGAGAAAGATCACAACTATTCGGTACAACACACACCTCTCTCTTTTTATATT TTTGGCTCCACTCAAAATTTACATGTTAGATCTTTTCATCACCATGTTGATTTGCTCCAACTTTGAATCACTGCAGGCAC CACCCATGCCTCCAAGTTTCAACCCACTTCATGACTACTCATCTCATCAACATCATCATAACAATCTGTATCCACAAATG AAGTTTCGAATCGGCGAAACTTCAGGTGAAAACAACAGCAACAACAGTGGGATGGTCATGGACTACATGCCACAAACACA ACCACCGCCACAAATAACATCATCCCCAGGAGGGTTTTATGGAGGAGCTGGTGGTTTCGACAAGCTGAGTTTCGCTGATG TGGTGCAGTTTGCAGATTTTGGACCCAAATTGGCCTTGAACCACCAAGGCAAGGATAACTGCGAAGAATCCGGTATCGAC CCGGTTTATTTTCTCAAGTTCCCTGTCTTGAACGACAAGATGGAGGACCAAAACTTGATGGTGAATCCAAATGGTGAAGG AGAAGAAGCTGAAAATGATGATGAGAGGTTCAATAACTTGGTGAGCGTGGACGACACGTCGAGGGCAGAAGAAGAGGGAA TCATCATCAGAGAAGATGAAGAAGAAACCACTCCTGATGACAACAACTCGGTGCAGCAGCATCAGCATCAGAATCAGTTT GTTGGTCATGAAGATCAGCAGGTTCAGAAGAGTAATGTGCAGGAAAACAAGAACAAGAGGAAGAGACCGAGAAGCGTTAA GACAACTGAGGAAGTTGAGAGCCAGCGCATGACCCACATCGCTGTTGAGAGGAACCGGAGGAAGCAAATGAATGAGCATC TTCGTGTCCTTAGATCCCTCATGCCTGGTTCATACGTCCAAAGGGTATGTCAATATGTCCCTATGAGCATATTTCGAAAT CCTTCTAAAGTTAATTCTAAAAACAGAATCAATTATGTGGAAAAACGTCCGCGTGACAAAATTGATTCTGAGAATAAATA AATAATATATACATAGCAATGAAAAAAGGGGTTTGAATTGCTCTCACAATTTCGGTGCAGTTTCATTCAGTTACATGAAT TACAATCCTTAAAAATGGAGAAGTACAGTTGATATACAATTCAAAACACTGAAAAAGAAATTAACATGTAGAAGCTATTG CACTACCCTATTTTTTTTATTGGACTTGAGATTTAAATTTTGCTCTCCATCTAGTATATTGTTCATGTTTGGATTAACTT TTTTTTTAATAATCATTTATGAAACTCATAAGCTAATGTTAAAGTTTCTTCTCAAAATTAATTGTCTCTAGCTAGATTCA GGATTTACAAACATACAATATAAGATAAGTATTCTGAAAAACCGCAAAAAATTATAAATAAGGATGATTGAAGCCAAATG GGTTTGTGGACCCACTAGTACATATGTTACTCTACTTTAACTCTACAAATTTTGTTACACCCTCTTGATTTTTTGTTTCT CTTTTTAATTTTTTTTTATGTATCTATAAAGGGTGATCAAGCTTCTATAATAGGGGGAGCTATAGAGTTTGTGAGGGAAT TGGAACAACTTCTTCAATGTTTGGAATCACAGAAGAGGAGGAGACTTCTCGGAGAAGCACAATCAAGACAGGTAGAAAAT TCAGCTGCTCTGGCAGCTGCACCAGCAACACAGCAACAGCCTCCATTCTTTTCTCCACCTTTGCCAGTAAATGACCAGAT GAAGCAGCTTGTGGAGATGGAGAGTGGTGGAGGACTTCGAGAAGAAACCGCAGAGAGCAAGTCTCTTTTGGCAGATGTAG AAGTGAAGCTTCTCGGATTCGACGCGATGATCAAAATCTTATCAAGAAGAAGGCCTGGACAGTTGATCAAGATCATTGCT GCACTTGAAGATCTTCAGCTCATTATCCTTCACACCAACATCACCACCATTGAACAAACAGTTCTTTATTCTTTCAATGT CAAGGCACGTACACTAAGTGCATGTTTGGAAAAAAAAATTAAAATTGAATTTAAAGTCAAAATCAATTCTTAGAAGTATG TGACAGTAATTACATAGTAGTTTTCTGAGTGTTAAAATTGATTCTGAAGAAAAATAAGTTGATACAAACATGCTTGTCTG GAAGCCACTTTGATTAGTCTTCAAGCAAAAACATAAATTAAATAAAGTTTGATGTTTCTGCAGGTGGCTGGTGATTCAAG GTTCACTGCTGAAGACATAGCCAGCTCCGTTCAGCAAATAGTGAGTTTTATCCATGCAAACACAAGCATGTGATCATTAT TATATGTAGTTATTACTATGTAGTGGTGGTGGCACCTATACTTGTCTTTATGCATGGGATGCTGATGCTGATTTTACAGT GCCACTTTTAGAATTTCCTTTTGTGCGCATTGAAGCAAGTGGTGATTGGACATGATGGCGGTTTAAGTTGCAGATGGTTG TCTTCTCTTCTAAAAGTAGCATATTACCAGAAAGGAGAAGAATTGGAAAGGTTGCATGTATTTACATAGTTATTTAGTAA TCGGTTTATGTTATTGTTTCCCCTTTTTTGTTCCTCCTACCATGTATACCTTAATGTTTAATGGAA
CDS sequence (LotjaGi2g1v0285100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGAAAGATCACAACTATTCGGCACCACCCATGCCTCCAAGTTTCAACCCACTTCATGACTACTCATCTCATCAACA TCATCATAACAATCTGTATCCACAAATGAAGTTTCGAATCGGCGAAACTTCAGGTGAAAACAACAGCAACAACAGTGGGA TGGTCATGGACTACATGCCACAAACACAACCACCGCCACAAATAACATCATCCCCAGGAGGGTTTTATGGAGGAGCTGGT GGTTTCGACAAGCTGAGTTTCGCTGATGTGGTGCAGTTTGCAGATTTTGGACCCAAATTGGCCTTGAACCACCAAGGCAA GGATAACTGCGAAGAATCCGGTATCGACCCGGTTTATTTTCTCAAGTTCCCTGTCTTGAACGACAAGATGGAGGACCAAA ACTTGATGGTGAATCCAAATGGTGAAGGAGAAGAAGCTGAAAATGATGATGAGAGGTTCAATAACTTGGTGAGCGTGGAC GACACGTCGAGGGCAGAAGAAGAGGGAATCATCATCAGAGAAGATGAAGAAGAAACCACTCCTGATGACAACAACTCGGT GCAGCAGCATCAGCATCAGAATCAGTTTGTTGGTCATGAAGATCAGCAGGTTCAGAAGAGTAATGTGCAGGAAAACAAGA ACAAGAGGAAGAGACCGAGAAGCGTTAAGACAACTGAGGAAGTTGAGAGCCAGCGCATGACCCACATCGCTGTTGAGAGG AACCGGAGGAAGCAAATGAATGAGCATCTTCGTGTCCTTAGATCCCTCATGCCTGGTTCATACGTCCAAAGGGGTGATCA AGCTTCTATAATAGGGGGAGCTATAGAGTTTGTGAGGGAATTGGAACAACTTCTTCAATGTTTGGAATCACAGAAGAGGA GGAGACTTCTCGGAGAAGCACAATCAAGACAGGTAGAAAATTCAGCTGCTCTGGCAGCTGCACCAGCAACACAGCAACAG CCTCCATTCTTTTCTCCACCTTTGCCAGTAAATGACCAGATGAAGCAGCTTGTGGAGATGGAGAGTGGTGGAGGACTTCG AGAAGAAACCGCAGAGAGCAAGTCTCTTTTGGCAGATGTAGAAGTGAAGCTTCTCGGATTCGACGCGATGATCAAAATCT TATCAAGAAGAAGGCCTGGACAGTTGATCAAGATCATTGCTGCACTTGAAGATCTTCAGCTCATTATCCTTCACACCAAC ATCACCACCATTGAACAAACAGTTCTTTATTCTTTCAATGTCAAGGTGGCTGGTGATTCAAGGTTCACTGCTGAAGACAT AGCCAGCTCCGTTCAGCAAATAGTGAGTTTTATCCATGCAAACACAAGCATGTGA
Protein sequence (LotjaGi2g1v0285100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEKDHNYSAPPMPPSFNPLHDYSSHQHHHNNLYPQMKFRIGETSGENNSNNSGMVMDYMPQTQPPPQITSSPGGFYGGAG GFDKLSFADVVQFADFGPKLALNHQGKDNCEESGIDPVYFLKFPVLNDKMEDQNLMVNPNGEGEEAENDDERFNNLVSVD DTSRAEEEGIIIREDEEETTPDDNNSVQQHQHQNQFVGHEDQQVQKSNVQENKNKRKRPRSVKTTEEVESQRMTHIAVER NRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGEAQSRQVENSAALAAAPATQQQ PPFFSPPLPVNDQMKQLVEMESGGGLREETAESKSLLADVEVKLLGFDAMIKILSRRRPGQLIKIIAALEDLQLIILHTN ITTIEQTVLYSFNVKVAGDSRFTAEDIASSVQQIVSFIHANTSM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
MobiDBLite | 1 | 28 | 28 | - | – | |
MobiDBLite | 41 | 72 | 32 | - | – | |
MobiDBLite | 41 | 70 | 30 | - | – | |
PANTHER | 49 | 444 | 396 | 1.0E-161 | – | |
PANTHER | 49 | 444 | 396 | 1.0E-161 | – | |
MobiDBLite | 134 | 233 | 100 | - | – | |
MobiDBLite | 150 | 170 | 21 | - | – | |
MobiDBLite | 184 | 209 | 26 | - | – | |
MobiDBLite | 210 | 233 | 24 | - | – | |
Gene3D | 220 | 310 | 91 | 2.2E-11 | ||
CDD | 229 | 286 | 58 | 6.71644E-13 | ||
ProSiteProfiles | 230 | 281 | 52 | 15.428 | ||
SUPERFAMILY | 230 | 297 | 68 | 3.01E-16 | ||
Pfam | 231 | 282 | 52 | 5.3E-10 | ||
SMART | 236 | 287 | 52 | 3.4E-9 | ||
CDD | 370 | 434 | 65 | 7.07392E-4 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi2g1v0285100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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