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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0285700 |
| Transcript ID | LotjaGi2g1v0285700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DUF1262 family protein; TAIR: AT1G13480.1 hypothetical protein (DUF1262); Swiss-Prot: sp|A0T0X5|RK2_THAPS 50S ribosomal protein L2, chloroplastic; TrEMBL-Plants: tr|I3SVS3|I3SVS3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0285700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:75881598..75883762) extracted from Lotus japonicus Gifu genome v1.2.
GCCAAATAAGCTAACCAAAATGGACCATTTCAAAGTTTCAACTTTTCAATTATATAAACCCAGGGACCAGTGGGGTACTT CAATTTTCTTATGGGGACCATATACTAACAACCTCCACACATGACTGCATGGTTTGTTTGAAAAGTATATTTTTTTCTTC ACTAGCTTCAGTCAACCTTGAGTATTTACACACGTTTAGCTAAACTGTCCATGTTGACCATATCAATTTTTTTTTTCTCA CATATATAAATACATGTGCTATATTTTCATCAAGCTCCACATTCAACAAGCTATTCAATATTCATAGATCAGAGCAAGAG CAACCATAATCTTTGTGAGTGAAGAATTGAGAAGTGAAGCAAAGTTAGAAAAATACAGAATGTATGTGACTAGGCCTCTT TCACTGTATAAGAAATCTGCAGAAGCTCTCTCATCACCTCCACCTGAAGGCCCCAATTCTGGTATACTGGTGATCCAAGA TGAAGAATTGGAAACAACCTCTTGTTTGGGGTTGGGACAGTACCATGAGGTGAAGGCTTTGCCTTTCCCTCAAAATTTGA ACCTTGAGCTGTTCTACAGATCAGGCATTTCACTCAACAGAAGCACTCATTTCCACCATGTTGCCTTCATTCCAGTGCTT AATCAGCCATTGTCTTCCAACAAATACTATGTGATACACCTTAATGGCAAGAACAGAGGGTAAGCCTTAAATTTTATGTA GAATCTTTCTAAATTGATTCTAAAGTCAACATCAATTATGGCGAGAAACTTTCGAGTGTCAGAATTGATTTTGAGGAAAA TAAATTAATCTAAACATGCTATTATTCTTTACTTACTGAACCAAAATTTATAAGGTGTATATTGATGTAATTTGCATTTG ATTTTGCAGAGAAGCATACATTAATTCAAAGGAGGAAGATTTGGACACCTTCTGTTTCTACAATTCTGTTTCTGATGCAC CCCTTCATCCCTTGGATATCAATGATTCACACCATGAGTTTGAGATATTTCCTAGGAGAAGCAAAGTTACTTTCAGGAGT GGTTTCTCAGCTAAATCTGTTGCTCCAGATGGATACCCTCCAAGGTTTTTGAGTACAAGGTGGAAAGTGAGTGCTTCTTC AACTTCAAGTGATTTTAATCTGGGAGAAGCATCAGGTGTGAATGATGACCTCCGTGCAAGCCAGCCAGAGTTCAAATTCT CCTTAGCTAGTACAAGTTCAGAAACTGTGGCTGTTGGAAAATGGTACTGCCCCTTCATGTTTATCAAGGAAGGAACTCAC AGAACATTGAAAGATGAAATGAGGAAATCTATGTTTTATGAGATGACACTTGAGCAGAAATGGGAGCAAGTATTTTCATG TGAGAATGATAATAGAATGGGAAATGTTGTGAATGTGGATGCTGTTGTTCAAAAGGAAGTGGTGGTGATTGCTGGCTGGG AAGCTGTAATGGACAGGATGGATGTTGCTGAGGGTCTTTTGTGGTTTAATAGTTTCAACAATGTTGGAGAGAAGAACAGT GTGGGACTGAGCACTGCAATAGTTGAGAGAATGAAGTGGGAACAGGAAAGAGTTGGGTGGATTGGAGGGAAAGAAAACCA GGTTAGAGTAGTGAAATCTTTTGAAGGGACTAATGGATGGAAGAAATTTGGATGCTATGTTTTGGTTGAGAGTTTTGTTG TAAAGAGATTGGATGGAAGCATAGTGCTTAACTATGCTTTCAAACACTCTCATCAACTTAGAAGCAAATGGGAATGAAAA TTTCTGGTGTTGGTTTACACCAAGACAAATTCATCCTGTTATGTTTTCAAGTGTATATGACAAGGTCTATGAGAATAGGA AATGCCTAGTCTTGTAACCTACTTATTCAATTTTGTCAAGAAGAAATTTTTTCCATTCTTTCAGTTTTACAGTGCAATCA TTCAAATTTTAATAAAATCATTGTTGACATAAAAAATTCATTGCACCAATTGTTGTATGTGTATCTATCAACTATTGCTC AAAGCTAACATGCAGCTCCCACTTCAGAATTTGTGGAAGACACAACAGATATGGTATTCTAAAGCTCCCGCTATGCGTGA GATCAAAGAAGGGGGCCAAATCCAAGAAACTGATTCCCGGCTCGAACCTGTGACTGCAAAGTTACATAACAATTTTACCA TTGCG
CDS sequence (LotjaGi2g1v0285700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATGTGACTAGGCCTCTTTCACTGTATAAGAAATCTGCAGAAGCTCTCTCATCACCTCCACCTGAAGGCCCCAATTC TGGTATACTGGTGATCCAAGATGAAGAATTGGAAACAACCTCTTGTTTGGGGTTGGGACAGTACCATGAGGTGAAGGCTT TGCCTTTCCCTCAAAATTTGAACCTTGAGCTGTTCTACAGATCAGGCATTTCACTCAACAGAAGCACTCATTTCCACCAT GTTGCCTTCATTCCAGTGCTTAATCAGCCATTGTCTTCCAACAAATACTATGTGATACACCTTAATGGCAAGAACAGAGG AGAAGCATACATTAATTCAAAGGAGGAAGATTTGGACACCTTCTGTTTCTACAATTCTGTTTCTGATGCACCCCTTCATC CCTTGGATATCAATGATTCACACCATGAGTTTGAGATATTTCCTAGGAGAAGCAAAGTTACTTTCAGGAGTGGTTTCTCA GCTAAATCTGTTGCTCCAGATGGATACCCTCCAAGGTTTTTGAGTACAAGGTGGAAAGTGAGTGCTTCTTCAACTTCAAG TGATTTTAATCTGGGAGAAGCATCAGGTGTGAATGATGACCTCCGTGCAAGCCAGCCAGAGTTCAAATTCTCCTTAGCTA GTACAAGTTCAGAAACTGTGGCTGTTGGAAAATGGTACTGCCCCTTCATGTTTATCAAGGAAGGAACTCACAGAACATTG AAAGATGAAATGAGGAAATCTATGTTTTATGAGATGACACTTGAGCAGAAATGGGAGCAAGTATTTTCATGTGAGAATGA TAATAGAATGGGAAATGTTGTGAATGTGGATGCTGTTGTTCAAAAGGAAGTGGTGGTGATTGCTGGCTGGGAAGCTGTAA TGGACAGGATGGATGTTGCTGAGGGTCTTTTGTGGTTTAATAGTTTCAACAATGTTGGAGAGAAGAACAGTGTGGGACTG AGCACTGCAATAGTTGAGAGAATGAAGTGGGAACAGGAAAGAGTTGGGTGGATTGGAGGGAAAGAAAACCAGGTTAGAGT AGTGAAATCTTTTGAAGGGACTAATGGATGGAAGAAATTTGGATGCTATGTTTTGGTTGAGAGTTTTGTTGTAAAGAGAT TGGATGGAAGCATAGTGCTTAACTATGCTTTCAAACACTCTCATCAACTTAGAAGCAAATGGGAATGA
Protein sequence (LotjaGi2g1v0285700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYVTRPLSLYKKSAEALSSPPPEGPNSGILVIQDEELETTSCLGLGQYHEVKALPFPQNLNLELFYRSGISLNRSTHFHH VAFIPVLNQPLSSNKYYVIHLNGKNRGEAYINSKEEDLDTFCFYNSVSDAPLHPLDINDSHHEFEIFPRRSKVTFRSGFS AKSVAPDGYPPRFLSTRWKVSASSTSSDFNLGEASGVNDDLRASQPEFKFSLASTSSETVAVGKWYCPFMFIKEGTHRTL KDEMRKSMFYEMTLEQKWEQVFSCENDNRMGNVVNVDAVVQKEVVVIAGWEAVMDRMDVAEGLLWFNSFNNVGEKNSVGL STAIVERMKWEQERVGWIGGKENQVRVVKSFEGTNGWKKFGCYVLVESFVVKRLDGSIVLNYAFKHSHQLRSKWE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 395 | 395 | 2.5E-165 | – | |
| PANTHER | 1 | 395 | 395 | 2.5E-165 | – | |
| Pfam | 23 | 123 | 101 | 7.5E-34 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0285700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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