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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0286200 |
Transcript ID | LotjaGi2g1v0286200.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; TAIR: AT3G05390.1 S-adenosyl-L-methionine-dependent methyltransferase; Swiss-Prot: sp|Q94II3|PMTL_ARATH Probable methyltransferase PMT21; TrEMBL-Plants: tr|A0A1J7HP45|A0A1J7HP45_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0286200 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:75914397..75916564) extracted from Lotus japonicus Gifu genome v1.2.
TTTTTTAAGGATACATTTGGGAAGTCATACCATTACCATATTCAAGTGGCAGCTCCACCAATGAAACTGGATCTAGACGT TTTCAAGTATTTTTTTGCATAAATTTCTTTGGATCATGGAACAATCATGTGCTATCTAGCTCATAGTTTAAAGACCAATT GAGTAAGTTGACCACTTTGAGTATCATATAATATATACCAACTGGTACAGTTCATATATTACACTTCCCAATTGCACTTA TTCAACACAAATTGTCCTTCCTTATAGCTAAAGCATTTGTTTGTGTTTCCTCTATGGTATGATTTGATTTGATGCCTTCA AAAAATGATTTGATGTAGCTCTATTATTTTCCATTTCCCTCATTTTGTTATAGAAGAGAGTCCAATCATATTCAATGGGG AGGTCATGTCTTCCCAAATGCAAACTGGCCAGAATATTGGGTTGGCTGCAGATTATTCTGGGAGGAATGGTTATCTTAGT AAGCATTTTGAGCCTAATAAAATTCTACTCTGTTGGGATTTTCTTCCACAGTGAAGATATGTGCCAGCAGAAATTCTACA CTGTGAAGGATGTTGTTCATGAAGGTTTCGATGCCAAAGCGCTCAGTGATCGAGTTGTAGAAGTGTTAAACAAGTTGGAA ACTTTGCAGGGCAAGCTTGAGTCTAAAGTACAAGAAATGGTGAAAAACAAGGGAACTTTGGAGAAGCAGTTCTTAGAGGA TGAAATAGTTAGGCCTCTTCACAGTGCTAATGTTGCTTTAAGACAGATTCGGCTTCCGAAGATTGCAGAAGGGAACTCCA CCGTGATGGAAGATCCTTTGATTAACTTTTTTGTGACAGAGGAGATTAGAAAGTATATAACCCCAAAGGAGAATAGAGTT AGCAAGATTAACCTCTATGGGACAGATAAAGTTTACAACACAATTGGGCATGCTTGTGTTTTGTACAAGAAAGAGTTAGA AGAGTACATGGACTATGACATTGGCTCCTACTGTGATGATGATTGGAACTTAGCTCAGAAGCTCATGCTCAATGGGTGTG ATCCTTTGCCTATAAGAAGATGTTTAACAAGAGCTTCAAAGGTTTACTATAAACCTTACCCTATAAATGAGTCACTTTGG AAGCTACCAGATCACAGAAATGTGAGGTGGGGGAACTACCACTGCAGAAACTTTGAGTGCTTATCAAGCAAGAATCCGAA GAGGGGCTATTCAAAATGCACTGGATGTTTTGAAATGGAAAAGGAAAAGCTGAAATGGGTTTCTAATAGTTCACTTCCTG CAGATTTTTTGATAGGTGATGTTTTGAAAATTAAGCCTGGTGAGATGAGAATTGGGGTAGACTATGGAATAGGAACTGGA ACATTTGCTGCAAGAATGAGGGAACATAATGTGACAATTGTCTCAACTGCTATGAACATTGGGGCTCCTTTCAATGAAAT GATAGCTCTTAGGGGTTTGATTCCTTTGTATGTCACACTTAATCAAAGGCTTCCATTCTTTGATAACACTATGGATTTGA TTCACACCACTGGTTTTATGGATGGTTGGATAGATCTGATGTTGTTGGATTTCATACTGTATGATTGGGATAGAATTCTA AGACCAGGAGGTTTATTATGGATTGACAGATTCTTCTGTAAGAGAAAGGATTTGGATGATTATATGTACATGTTTCTTCA ACTTAGATACAGGAAGCACAAATGGGTTATTTCTTCAAAGTCAAAGGATGAGGTATATCTCTCTGCATTGCTGGAAAAAC CTCCCAGAGCCATATGAACACAATCAACTTCTTGTTTTCAATTTTCACCCTTTCTAATACTTTGCATATGTGGCTGTATT ATTATGGATGCAATTTATGTACTAGGAATCAGGAGTTTTTATATTTAGTTTTCCCCCTGGTGTAGATTTTGCAAGCATAT ATTGCAATAGTTCTTCTGACCTATAATTTTCTGTTCCTTGATAACATTTTTCTTGTTTTTTTCTGAAAGCACTGATCTTA ACGATGATGCTGGTGCTCAAACTGTCCTTCACATTGAATCACTTGGTGATGTTAACTATTGTTAAGCTTGTTAAGCATTT ATCTTAAGCATGTACACATGTTCTTCCTAAATTTATATAGTTTTTTATGTTGTATATGTTTTGGATGTCCCTATGTATTA GTTTCTTT
CDS sequence (LotjaGi2g1v0286200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGAGGTCATGTCTTCCCAAATGCAAACTGGCCAGAATATTGGGTTGGCTGCAGATTATTCTGGGAGGAATGGTTAT CTTAGTAAGCATTTTGAGCCTAATAAAATTCTACTCTGTTGGGATTTTCTTCCACAGTGAAGATATGTGCCAGCAGAAAT TCTACACTGTGAAGGATGTTGTTCATGAAGGTTTCGATGCCAAAGCGCTCAGTGATCGAGTTGTAGAAGTGTTAAACAAG TTGGAAACTTTGCAGGGCAAGCTTGAGTCTAAAGTACAAGAAATGGTGAAAAACAAGGGAACTTTGGAGAAGCAGTTCTT AGAGGATGAAATAGTTAGGCCTCTTCACAGTGCTAATGTTGCTTTAAGACAGATTCGGCTTCCGAAGATTGCAGAAGGGA ACTCCACCGTGATGGAAGATCCTTTGATTAACTTTTTTGTGACAGAGGAGATTAGAAAGTATATAACCCCAAAGGAGAAT AGAGTTAGCAAGATTAACCTCTATGGGACAGATAAAGTTTACAACACAATTGGGCATGCTTGTGTTTTGTACAAGAAAGA GTTAGAAGAGTACATGGACTATGACATTGGCTCCTACTGTGATGATGATTGGAACTTAGCTCAGAAGCTCATGCTCAATG GGTGTGATCCTTTGCCTATAAGAAGATGTTTAACAAGAGCTTCAAAGGTTTACTATAAACCTTACCCTATAAATGAGTCA CTTTGGAAGCTACCAGATCACAGAAATGTGAGGTGGGGGAACTACCACTGCAGAAACTTTGAGTGCTTATCAAGCAAGAA TCCGAAGAGGGGCTATTCAAAATGCACTGGATGTTTTGAAATGGAAAAGGAAAAGCTGAAATGGGTTTCTAATAGTTCAC TTCCTGCAGATTTTTTGATAGGTGATGTTTTGAAAATTAAGCCTGGTGAGATGAGAATTGGGGTAGACTATGGAATAGGA ACTGGAACATTTGCTGCAAGAATGAGGGAACATAATGTGACAATTGTCTCAACTGCTATGAACATTGGGGCTCCTTTCAA TGAAATGATAGCTCTTAGGGGTTTGATTCCTTTGTATGTCACACTTAATCAAAGGCTTCCATTCTTTGATAACACTATGG ATTTGATTCACACCACTGGTTTTATGGATGGTTGGATAGATCTGATGTTGTTGGATTTCATACTGTATGATTGGGATAGA ATTCTAAGACCAGGAGGTTTATTATGGATTGACAGATTCTTCTGTAAGAGAAAGGATTTGGATGATTATATGTACATGTT TCTTCAACTTAGATACAGGAAGCACAAATGGGTTATTTCTTCAAAGTCAAAGGATGAGGTATATCTCTCTGCATTGCTGG AAAAACCTCCCAGAGCCATATGA
Protein sequence (LotjaGi2g1v0286200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRSCLPKCKLARILGWLQIILGGMVILVSILSLIKFYSVGIFFHSEDMCQQKFYTVKDVVHEGFDAKALSDRVVEVLNK LETLQGKLESKVQEMVKNKGTLEKQFLEDEIVRPLHSANVALRQIRLPKIAEGNSTVMEDPLINFFVTEEIRKYITPKEN RVSKINLYGTDKVYNTIGHACVLYKKELEEYMDYDIGSYCDDDWNLAQKLMLNGCDPLPIRRCLTRASKVYYKPYPINES LWKLPDHRNVRWGNYHCRNFECLSSKNPKRGYSKCTGCFEMEKEKLKWVSNSSLPADFLIGDVLKIKPGEMRIGVDYGIG TGTFAARMREHNVTIVSTAMNIGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWIDLMLLDFILYDWDR ILRPGGLLWIDRFFCKRKDLDDYMYMFLQLRYRKHKWVISSKSKDEVYLSALLEKPPRAI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 19 | 19 | - | – | |
PANTHER | 5 | 460 | 456 | 7.6E-248 | – | |
PANTHER | 5 | 460 | 456 | 7.6E-248 | – | |
TMHMM | 13 | 35 | 23 | - | – | |
Phobius | 20 | 44 | 25 | - | – | |
Phobius | 45 | 460 | 416 | - | – | |
Coils | 67 | 98 | 32 | - | – | |
Gene3D | 282 | 454 | 173 | 4.2E-7 | – | |
Pfam | 304 | 410 | 107 | 3.2E-6 | ||
SUPERFAMILY | 313 | 427 | 115 | 3.67E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Methyltransferase activity | Catalysis of the transfer of a methyl group to an acceptor molecule. |
Expression pattern of LotjaGi2g1v0286200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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