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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0286300 |
| Transcript ID | LotjaGi2g1v0286300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | S-adenosylmethionine decarboxylase proenzyme; TAIR: AT3G25570.1 Adenosylmethionine decarboxylase family protein; Swiss-Prot: sp|Q9M4D8|DCAM_VICFA S-adenosylmethionine decarboxylase proenzyme; TrEMBL-Plants: tr|A0A072TH61|A0A072TH61_MEDTR S-adenosylmethionine decarboxylase proenzyme; Found in the gene: LotjaGi2g1v0286300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:75931547..75934648) extracted from Lotus japonicus Gifu genome v1.2.
CGAAAACCCTATTTTTCACACAAGCTACCCTATAAATTCACGTTCTTCTCCTCTTTACAATCACACGCAAACGCAACCTT CTTCTTCTCCTTCGATCCTCTTTTTCTCTCGTTCTCGTTCGTTCGTTTCTAGGGTTTACCTTGTTGCTTCCTCTTTCTCT CCGATTCCTTATCTGTAAGCGTTTTCCTTCGATCTTCAGATCGGTGATTCATCGTTCTGTTCGTTTTCCTTTTCTCGTTG TTTGAAATTGTTTTCTAATTTTGATTTGATTTTGTTGAATTTTTTCAGATTCTACTTTGGATTGAAGGTGTTGAAAGCGT GGTTCGTTGCGGCATTTTCATCTGATTTACCTATCAAATCAGGTACCTACTTTAGATCTGATGAATTTTTTGTGTTTTCT CCCTTTCTCGATTATGGTTGTTTGAATCGTGATTTTGATTTGTATTCGTGAAAATTTTCTTGTGGTTTTGGTTCAGAGGT TTTTGATAACTATTATTTTCGTTTGTGAATAAGAATTTTGATACCTTTTGGTTGGTACTTGATCTGGTAATTGATTGTGG TAATCGGTGTTTGCTATCCGATTACATGATTAGCGGGGACCTATCAACTATTTGGATTATCGGCGGTGATGGCCGCTTTA CCATCCCTTTTCTTGAAATTATCGCCTTGTTAAATCATTATCGTCTTTTTGTAATGTGTGAATGATTATCAAACCCTTTT CATGTTTCATTGATCCAAAAAGGTTTTCAGATTACTCACATGCCATGAAACCCTTTTCATTTTATCGATTTAAAATGTTT TTTCAGATTATTCATAATTTTAGAAGAATTGATTTTAATTTGATTTTGTTTGAATGGTGAATTAATTGTTTTTTAAAATT TAACACACATGTTCATGATTTTTGTGCCTTTTATACCAATGTTGGTTTTCCTGCAACTTTTCAATGTTATGATGATTGTT TTATGTCATTTCAATTGATAATCTATCTATTGATTGTTTTGAAGCAGGACTGAATGAACTAATGGAGTCTAAAGGTGGTA AAAAGAAGTCCAGTAGTAGTAGTAAATCATCTTCATCATTATTCTACGAAGCTCCCCTCGGATACAGCATTGAAGACCTT CGCCCCAACGGTGGAATCAAGAAATTCAGATCAGCTGCTTACTCCAACGTATGTTTTCTATATGTGTTTGGATATATTGA ATTTCATTATGTTATTTGCTTTACCGTGTCTAATACTTGGTTTTTCATGTCTCTTTTTTGCAGTGCGCTCGCAAACCATC CTGATACGACTCACTGATTGATAGTTCCTTGCATGCAACCAGTGTTTTTTTTAGCCATTTTTGTTTCCCTCTAGAATTAG TTACTACTCTCCTTCAAACAGCATCTTTCCAATTCCTCTCTTTGCGATTGTACTCTCTTTGCACCTGTCCTTTTTACTCC AACTGCATTCTTTCCGGTCACAGCCATGGCTGTTTCTGCAATTGGTTTCGAAGGTTACGAGAAGAGGTTGGAAATAACCT TCTTCCCCCCTGGACTTTTTTCTGACCCTGAAGGAAAGGGGCTAAGAGCCCTCACCAAATCCCAGTTGGACGAGATTCTT GCACCCGCTGAGTGCACCATTGTTTCTTCCCTAGCCAATGACGACGTTGACTCTTATGTTCTATCTGAGTCCAGCCTCTT TGTCTATGCCTACAAGATCATTATCAAAACCTGCGGCACTACCAAGCTACTGCTTGCAATCCCACCTATCTTGAAATTGG CTGAGTTCGTTTCTCTTAATGTGAAATCCGTGAGGTACACCCGAGGAAGTTTCATTTTTCCTGGTGCTCAGTCTTTCCCT CATCGCAGCTTTTCTGAGGAAGTAGCAATCCTGGATGGTTACTTTGGCAAGCTAGGGTCTGGCAGCTCTGCTTATATCAT GGGTGGTTCCGACAGCGAACAGAAATGGCATGTTTACTCTGCCTCTGCCGAATCCGTGAGGCCATGCGACTCTGTTTACA CACTAGAGATGTGCATGACTGGCTTAGATAGAGAGAAGGCACAGGTTTTCTACAAAGACCAATCTGGTTCAGCTGCCATG ATGACTGTCAATTCCGGTATCAGAAACATCCTTCCAAACTCTCAGATATGCGATTTTGACTTTGAACCTTGTGGTTACTC AATGAATTCTGTGGAAGGAGATGCTGTTTCTACCATTCATGTTACTCCAGAAGACGGTTTTAGCTATGCAAGCTTTGAAA CAGTGGGGTACAATTTGAAAGCTGTGGATCTGAAAGAATTGGTGGTGAGGGTGTTGGCATGTTTTGAACCATCTGAGTTT TCTATTGCTGTTCATGCTGACAATGCAAGCAGGTCATTTGAGCAAGGCTGTGTACTGGATCTTAAAGGATACGGTTGCGA AGAGAGGAGCCTCGAGGGGCTTGGAATGGGTGGTTCAGTTGTCTACCAAAAGTTTGTGAAGACGGCTTCTGAATGTGGCT CTCCTAGATCAACTCTCAAGTGCTGGAAAGATGATTCTGAAGAAGAGTAGTTCATTGTCTTTTATGATTTCTGTCTTTTT GAATTGAATAAGTCATTGCCCTCAGGCTTTGGCATCGTCCCCTTCAAGTCTTGTCTTTCAGGATATTATCCGTTTTCATT TTTTGTTTTTCTGGATTTATAATTATGAATTTATGATGCTGGTTTCATGTCACCTATTTGTTCTCTTATTGCTGGTTGCA TAGTAATATGTTTGGTTTATTATTATGTTTGGATGAGTTCTTTATAATTAATTTCTAAACCTGTAAGCTCTCACGTAAAA ACTTCTTTCAGAATTGATTCCGACTTAAAATGTTTTAACTGTTATAACATTGCATTTTGATTCGGGTTTAGTTACTTTTT GCAAATAAATGAACAAGAAACCAAATTGAAGGACATTGATCCTCCGTCATCAAAGAATAACTCTCAATAAGTCAATATTC AACATGACGAGGTTTACCTTCCACTCAAGCATGAGCAATTTCTCGTTACTCCAAAGCTGATTTTTCAGCACCCTTTTTCA GAATCAATGTTTTTTGTTGTGATCAAGGTGTATACTCTGGAGGTAGTGAAGTTTTAGTAAAT
CDS sequence (LotjaGi2g1v0286300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGTTTCTGCAATTGGTTTCGAAGGTTACGAGAAGAGGTTGGAAATAACCTTCTTCCCCCCTGGACTTTTTTCTGA CCCTGAAGGAAAGGGGCTAAGAGCCCTCACCAAATCCCAGTTGGACGAGATTCTTGCACCCGCTGAGTGCACCATTGTTT CTTCCCTAGCCAATGACGACGTTGACTCTTATGTTCTATCTGAGTCCAGCCTCTTTGTCTATGCCTACAAGATCATTATC AAAACCTGCGGCACTACCAAGCTACTGCTTGCAATCCCACCTATCTTGAAATTGGCTGAGTTCGTTTCTCTTAATGTGAA ATCCGTGAGGTACACCCGAGGAAGTTTCATTTTTCCTGGTGCTCAGTCTTTCCCTCATCGCAGCTTTTCTGAGGAAGTAG CAATCCTGGATGGTTACTTTGGCAAGCTAGGGTCTGGCAGCTCTGCTTATATCATGGGTGGTTCCGACAGCGAACAGAAA TGGCATGTTTACTCTGCCTCTGCCGAATCCGTGAGGCCATGCGACTCTGTTTACACACTAGAGATGTGCATGACTGGCTT AGATAGAGAGAAGGCACAGGTTTTCTACAAAGACCAATCTGGTTCAGCTGCCATGATGACTGTCAATTCCGGTATCAGAA ACATCCTTCCAAACTCTCAGATATGCGATTTTGACTTTGAACCTTGTGGTTACTCAATGAATTCTGTGGAAGGAGATGCT GTTTCTACCATTCATGTTACTCCAGAAGACGGTTTTAGCTATGCAAGCTTTGAAACAGTGGGGTACAATTTGAAAGCTGT GGATCTGAAAGAATTGGTGGTGAGGGTGTTGGCATGTTTTGAACCATCTGAGTTTTCTATTGCTGTTCATGCTGACAATG CAAGCAGGTCATTTGAGCAAGGCTGTGTACTGGATCTTAAAGGATACGGTTGCGAAGAGAGGAGCCTCGAGGGGCTTGGA ATGGGTGGTTCAGTTGTCTACCAAAAGTTTGTGAAGACGGCTTCTGAATGTGGCTCTCCTAGATCAACTCTCAAGTGCTG GAAAGATGATTCTGAAGAAGAGTAG
Protein sequence (LotjaGi2g1v0286300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAVSAIGFEGYEKRLEITFFPPGLFSDPEGKGLRALTKSQLDEILAPAECTIVSSLANDDVDSYVLSESSLFVYAYKIII KTCGTTKLLLAIPPILKLAEFVSLNVKSVRYTRGSFIFPGAQSFPHRSFSEEVAILDGYFGKLGSGSSAYIMGGSDSEQK WHVYSASAESVRPCDSVYTLEMCMTGLDREKAQVFYKDQSGSAAMMTVNSGIRNILPNSQICDFDFEPCGYSMNSVEGDA VSTIHVTPEDGFSYASFETVGYNLKAVDLKELVVRVLACFEPSEFSIAVHADNASRSFEQGCVLDLKGYGCEERSLEGLG MGGSVVYQKFVKTASECGSPRSTLKCWKDDSEEE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 353 | 353 | 1.6E-197 | – | |
| Gene3D | 1 | 68 | 68 | 6.7E-31 | – | |
| PIRSF | 1 | 336 | 336 | 1.0E-107 | ||
| PANTHER | 1 | 353 | 353 | 1.6E-197 | ||
| Pfam | 7 | 330 | 324 | 1.8E-109 | ||
| TIGRFAM | 8 | 333 | 326 | 8.7E-133 | ||
| SUPERFAMILY | 11 | 332 | 322 | 1.57E-127 | ||
| ProSitePatterns | 63 | 73 | 11 | - | ||
| Gene3D | 69 | 333 | 265 | 3.2E-101 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Adenosylmethionine decarboxylase activity | Catalysis of the reaction: S-adenosyl-L-methionine + H(+) = S-adenosylmethioninamine + CO(2). | ||
| Biological process | Spermine biosynthetic process | The chemical reactions and pathways resulting in the formation of spermine, a polybasic amine found in human sperm, in ribosomes and in some viruses and involved in nucleic acid packaging. | ||
| Biological process | Spermidine biosynthetic process | The chemical reactions and pathways resulting in the formation of spermidine, N-(3-aminopropyl)-1,4-diaminobutane. |
Expression pattern of LotjaGi2g1v0286300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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