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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0286600 |
Transcript ID | LotjaGi2g1v0286600.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | FBD-associated F-box protein; TAIR: AT1G13570.1 F-box/RNI-like superfamily protein; Swiss-Prot: sp|Q9FZ70|FDL1_ARATH F-box/FBD/LRR-repeat protein At1g13570; TrEMBL-Plants: tr|I1JEP2|I1JEP2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0286600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:75966921..75969315) extracted from Lotus japonicus Gifu genome v1.2.
GCCATCTCTCTGTCTGTGTCTTCATCCACCGAACCGAACAAGAAGAAGACAGAGTTGCTGATCACAAAATCAGAAATTCA TTGCTCTCTCAACTTTCGTTCTTTGGTACATATCTCTTCAACTCTAATCAATTTCTAGTTCCGTGCTTCTTTTGAATTCT AGATCTGCTTTTTTTTTTTTCCCTGGTTTCGCATAATTCAACTATACCTTGCTTCAAATCTGGTTAATGGCTAGTAAAAG GTTCACTGATGCATAAACTTTATGGTTGCGATTTTTTTATTTTATAAATGGATTATGCAATTTGCGTGGTAGAATTGTTT ATTGATTGTGTTTTTTTTTCTTTGTTGATTGTATTAGCTGAATTATATAGATGGGTGATGTTTTGGGTCCTGACTCGATC AGTGACCTTCCTCAAAGCATTATAGAGAGCATTCTGGTTAAGCTTCCAATAAGAGATGCTGTGAAAACTAGCATTTTGTC TAGCAAATGGAGGTACAAATGGGCTTCCATGTCTCACCTCGTGTTTGACGAGAAGTCTGTACCTTCGTGTAATGACCGAG AGGTTGCTGAGCAAAGTTTCGTCAAGTTCATTGCCGGCACGCTATTTCTTCACCAAGGATCAATTCATAAGTTCCAAATT ACAAATCCGAACTTGCAGACCTGCCCTGAAATAGATCAGTGGATTCTTTTCCTATCAAGGAATGATATCAAGGAATTGAT CCTTGAATTAGGAGAAGGTGAATTTTTTAGAGTGCCATCCTGCCTTTTTAACTGTAAGAAGTTGACTCGCTTGGAGGTTT CGCGCTGTGAGTTGGATCCGCCTCTTAGTTTTAAGGGATTCATGTATTTAAAATGTCTTAACCTTCATCAAGTGTTGATA TCCCCTGATGCAATTCAGAGCCTCATTTCCAATTGCCCTCTGTTGGAGAGTTTGTCATTGTCATATGTTGATAGTTTAGC TCTTACTGTCCGCGCTCCGAACCTCAAGCACTTGTGCCTTGAAGGTGAATTCAAGGATATATGTCTTGAAGATACACCAC TTTTGGTTGAGATATATCTTGCTATGTATATGACTGATGACATTGCTGAGCAATTTGAGCAAAGCTCAAAATGCAATTTT GTCAAGTTTCTTGGTGGTGTGCCTAATCTTGAGAAGCTTGTTGGGCTTATCGACTTCACAAAGGTAACATTTAGTTCTTA TCTATTATGTTTCACCTTTTGTATATAGTTTAAGGATGAGTGTTTTTGTTGGATGTATATCCAATTTCTAATTCATTTTT GCACGCTCTTGAAGTATTTGAGCATAGGCAATGACCCAAGGCCGCGTCCAATAATGTACAACAAATTGGAGACTATTGAA TTGTATCAAGTAAGTTTTGAGGATATGAAGGAGATACTTGTTGTCCTTCGCTTGATTACAAGCTCTCCCAATCTAAAGGA ACTTCAAATTTCAGTAAGTCCATACTCATTACAAAAATGGAGAAAATTAAATTTTCTCTGTTTTGTTTTTATTAAGTGAT GAAGAGTGGTTCTATTTTTAATTTTTACCTATAAGAGTGTAACTACGTATTTGCAATCTATTAATTTTATGCAATTGACT TTGGCAGGGCTCATCAAACATACCTACTGCCATAGATACCCCGGATTTGGATTTCTGGGAAAAGGAGTGTCCCTCAAATG CTACACTTAGACAACTTAAAGTTGTGAAGTTAACAGAAATGTGTGGTGTGCCACATGAGATGGAATTTATCAAATTTTTG CTTGGTTGTTCACCTGAGCTTGAGACAATGATGATCACTTCTTCTGCATATGACATGGAAATTCAATTGAAAATGTTGAT CGAATTGTTGAAATTTCGAAGAGCTTCTACTAGAGCAGAAATTGTTTTTGTCCATGAGTAAAATAGTGGACTATGTTATC AAATGCATTCCTTTGTGTCTTTGTTAATTAGTTACAATTAACTAGCGTGTACTTTACATATCCCCATTCAAAATATGAGA CAATTTGTAAACTTTAAAGCATAAGTAAAAATGCTTATATATGGATTATAAACATGAGATATGTTGGATCAAGATATAGA GTCCATGTTACTGACAGAAAACCCAAACAAGCAGCTAGATTTGAAAAGATAAAGGTCATAATGGCTAATTACTTGTAATA TGCACCACACCCAACTCCACTCAACTACTTGTCAGCAATGCTTGTATTGGGGTTTTGGCGGTAATAAACAAGTGTAAGTT GATGTAGTTTATCCAAGATTGTCTGATTCAAGACTAGGCTTGGTCAACCATCTGCCCTATCTCCACCCCATCTTGCAGCT GAATGCTCCCTTTGATGCTAGAGTCACAGCCATGCCATTCCTCCGTATCCCAGCTACTATCGTTCTCACCTGGGC
CDS sequence (LotjaGi2g1v0286600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGATGTTTTGGGTCCTGACTCGATCAGTGACCTTCCTCAAAGCATTATAGAGAGCATTCTGGTTAAGCTTCCAAT AAGAGATGCTGTGAAAACTAGCATTTTGTCTAGCAAATGGAGGTACAAATGGGCTTCCATGTCTCACCTCGTGTTTGACG AGAAGTCTGTACCTTCGTGTAATGACCGAGAGGTTGCTGAGCAAAGTTTCGTCAAGTTCATTGCCGGCACGCTATTTCTT CACCAAGGATCAATTCATAAGTTCCAAATTACAAATCCGAACTTGCAGACCTGCCCTGAAATAGATCAGTGGATTCTTTT CCTATCAAGGAATGATATCAAGGAATTGATCCTTGAATTAGGAGAAGGTGAATTTTTTAGAGTGCCATCCTGCCTTTTTA ACTGTAAGAAGTTGACTCGCTTGGAGGTTTCGCGCTGTGAGTTGGATCCGCCTCTTAGTTTTAAGGGATTCATGTATTTA AAATGTCTTAACCTTCATCAAGTGTTGATATCCCCTGATGCAATTCAGAGCCTCATTTCCAATTGCCCTCTGTTGGAGAG TTTGTCATTGTCATATGTTGATAGTTTAGCTCTTACTGTCCGCGCTCCGAACCTCAAGCACTTGTGCCTTGAAGGTGAAT TCAAGGATATATGTCTTGAAGATACACCACTTTTGGTTGAGATATATCTTGCTATGTATATGACTGATGACATTGCTGAG CAATTTGAGCAAAGCTCAAAATGCAATTTTGTCAAGTTTCTTGGTGGTGTGCCTAATCTTGAGAAGCTTGTTGGGCTTAT CGACTTCACAAAGTATTTGAGCATAGGCAATGACCCAAGGCCGCGTCCAATAATGTACAACAAATTGGAGACTATTGAAT TGTATCAAGTAAGTTTTGAGGATATGAAGGAGATACTTGTTGTCCTTCGCTTGATTACAAGCTCTCCCAATCTAAAGGAA CTTCAAATTTCAGGCTCATCAAACATACCTACTGCCATAGATACCCCGGATTTGGATTTCTGGGAAAAGGAGTGTCCCTC AAATGCTACACTTAGACAACTTAAAGTTGTGAAGTTAACAGAAATGTGTGGTGTGCCACATGAGATGGAATTTATCAAAT TTTTGCTTGGTTGTTCACCTGAGCTTGAGACAATGATGATCACTTCTTCTGCATATGACATGGAAATTCAATTGAAAATG TTGATCGAATTGTTGAAATTTCGAAGAGCTTCTACTAGAGCAGAAATTGTTTTTGTCCATGAGTAA
Protein sequence (LotjaGi2g1v0286600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGDVLGPDSISDLPQSIIESILVKLPIRDAVKTSILSSKWRYKWASMSHLVFDEKSVPSCNDREVAEQSFVKFIAGTLFL HQGSIHKFQITNPNLQTCPEIDQWILFLSRNDIKELILELGEGEFFRVPSCLFNCKKLTRLEVSRCELDPPLSFKGFMYL KCLNLHQVLISPDAIQSLISNCPLLESLSLSYVDSLALTVRAPNLKHLCLEGEFKDICLEDTPLLVEIYLAMYMTDDIAE QFEQSSKCNFVKFLGGVPNLEKLVGLIDFTKYLSIGNDPRPRPIMYNKLETIELYQVSFEDMKEILVVLRLITSSPNLKE LQISGSSNIPTAIDTPDLDFWEKECPSNATLRQLKVVKLTEMCGVPHEMEFIKFLLGCSPELETMMITSSAYDMEIQLKM LIELLKFRRASTRAEIVFVHE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
SUPERFAMILY | 6 | 88 | 83 | 5.63E-9 | ||
PANTHER | 7 | 401 | 395 | 2.1E-98 | – | |
PANTHER | 7 | 401 | 395 | 2.1E-98 | – | |
ProSiteProfiles | 7 | 41 | 35 | 8.888 | ||
Gene3D | 8 | 275 | 268 | 2.6E-26 | ||
SMART | 13 | 53 | 41 | 0.006 | ||
SUPERFAMILY | 98 | 330 | 233 | 8.63E-14 | – | |
SMART | 348 | 419 | 72 | 7.2E-8 | ||
Pfam | 352 | 387 | 36 | 1.2E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0286600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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