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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0287900 |
| Transcript ID | LotjaGi2g1v0287900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GH3.3; TAIR: AT2G14960.1 Auxin-responsive GH3 family protein; Swiss-Prot: sp|O82333|GH31_ARATH Probable indole-3-acetic acid-amido synthetase GH3.1; TrEMBL-Plants: tr|A0A173H224|A0A173H224_VICFA Auxin-responsive GH3 family protein; Found in the gene: LotjaGi2g1v0287900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:76099558..76101647) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCTGTGGATTCAACTCTTTCATCTCCCTTAGGCCCCCCTGCGTGCGAGAAAGATGCAAAAGCACTGCAGTTCATCGA GGAAATGACACGAAACGCCGACGCAGTCCAGGAGAGGGTACTGGCGGAGATTCTGAGCCGAAACGCCAACACAGAGTACC TCAAACGCTTCCACCTCGACGGCGCCACCGACCGTGAAACCTTCAAGTCCATGGTTCCTGTCATCACCTATGAAGATGTC CAGCCTGAGATTCAGCGCATCGCCAATGGCGACCGCTCCCCTATCCTCTCTGCTCAGCCCATCTCTGAATTCCTCACAAG GTCAGTAACGTAACATTGATTTTAACCTCACATACAGTACTCTTTTTGGTTTTGATATATATGGGAATTTGGAGCTGAAA CTAATTTTGGTTTTGTGTTGTGGAATCTGAATCTGCAGTTCTGGAACTTCAGCTGGTGAAAGAAAACTGATGCCAACAAT TAAGGAAGAGCTGGATCGTCGCCAGCTTCTATACAGCCTCCTCATGCCAGTTATGAACCTGTAAGTTCCTTCCTACATCT GTGCCTAATTAATGTCTCTTGTCTTTTTCTCAATATATATATGACCATTTATAAATTCCTTATCTATAAACAATTAAATA CTTCAATAAAAATATGTTTATTTCTTATTCTAATCATAATCATGTTTATTATTTTGAATGGAACAGTTATGTACCGGGTT TGGACAAAGGAAAGGGTCTCTACTTTTTGTTTGTGAAGTCCGAATCAAGGACCCCGGGTGGGTTATTGGCCCGACCCGTT CTCACAAGCTACTACAAGAGCCAACATTTCAAGACCCGACCCTATGACCCGTACAATGTTTACACTAGCCCAAATGAAGC TATCTTGTGCCCTGACTCATTTCAGAGCATGTACACTCAGATGCTTTGCGGCCTCATAGAGCGCAATCAGGTCCTTCGCC TCGGTGCGGTCTTTGCCTCTGGTCTCCTTCGTGCAATCCGGTTCCTCCAGCTCAATTGGCCCGAACTTGCCCACGACATC CGCACCGGGAACCTGAATTCCCGGATCACTGACCCGACGTTAAAGGGTTGCATGAAAGAGATCCTAAAACCCGACCCGGA ATTGGCCTCGTTTGTAGCGCGTGAATGTTCCAAGGAAGATTGGGAAGGAATGATCACGAGGATTTGGCCTAACACCAAAT ACCTTGATGTGATTGTAACGGGCGCAATGGCACAATACATTCCCACTCTCAACTACTATAGTGGAGGTTTACCAATGGCA TGCACCATGTACGCTTCCTCAGAGTGCTACTTCGGGCTCAACCTGAACCCGATGTGCAAGCCTTCTGAGGTTTCGTACAC AATAATGCCAAACATGGCCTACTTCGAGTTTCTCCCGCACGAGTCCGGGTCAGCCAACTCGCCTTGGCTGACCCATGACT CGCCGGATGAACTCGTGGAGCTTGCTGACGTGGAGGTAGGGAGGGAGTACGAGTTGGTGATCACCACCTATGCGGGGTTG TACCGCTATCACGTTGGTGACATCCTCCGGGTCACAGGGTTCCACAACTCAGCGCCGCAGTTCCACTTTGTGCGCCGGAA GAATGTGCTTCTAAGCATTGACTCAGACAAGACAGATGAGTCGGAGCTGCAGTGCGCGGTGGAGAACGCCTCAAAGCTGC TCTCTGGGTTCAACACGAGCGTGGTGGAGTACACGAGCTACGCGGACACAAGGACTATTCCGGGACACTACGTGATTTAC TGGGAGCTGTTGACCAAAGACTCAGCGAACTCACCGAGTCATGAGGTGTTGGATCGGTGTTGTTTGGAGATGGAGGAATC ATTGAACTCAGTTTATAGGCAGTGCCGGGTCTCAGATCATTCGATTGGGCCGCTGGAAATACGTGTTGTGAGGAGTGGGA CGTTTGAGGAGCTTATGGATTATGCAATCTCAAGAGGTGCGTCCATAAATCAATATAAGGTGCCAAGGTGTGTGAATTTT ACTCCCATAATGGAGCTATTGGACTCAAGGGTTGTGTCTGTTCACTTTAGCAAAGATTTGCCACATTGGACTCCTGAAAG GAAAAGATGA
CDS sequence (LotjaGi2g1v0287900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGTGGATTCAACTCTTTCATCTCCCTTAGGCCCCCCTGCGTGCGAGAAAGATGCAAAAGCACTGCAGTTCATCGA GGAAATGACACGAAACGCCGACGCAGTCCAGGAGAGGGTACTGGCGGAGATTCTGAGCCGAAACGCCAACACAGAGTACC TCAAACGCTTCCACCTCGACGGCGCCACCGACCGTGAAACCTTCAAGTCCATGGTTCCTGTCATCACCTATGAAGATGTC CAGCCTGAGATTCAGCGCATCGCCAATGGCGACCGCTCCCCTATCCTCTCTGCTCAGCCCATCTCTGAATTCCTCACAAG TTCTGGAACTTCAGCTGGTGAAAGAAAACTGATGCCAACAATTAAGGAAGAGCTGGATCGTCGCCAGCTTCTATACAGCC TCCTCATGCCAGTTATGAACCTTTATGTACCGGGTTTGGACAAAGGAAAGGGTCTCTACTTTTTGTTTGTGAAGTCCGAA TCAAGGACCCCGGGTGGGTTATTGGCCCGACCCGTTCTCACAAGCTACTACAAGAGCCAACATTTCAAGACCCGACCCTA TGACCCGTACAATGTTTACACTAGCCCAAATGAAGCTATCTTGTGCCCTGACTCATTTCAGAGCATGTACACTCAGATGC TTTGCGGCCTCATAGAGCGCAATCAGGTCCTTCGCCTCGGTGCGGTCTTTGCCTCTGGTCTCCTTCGTGCAATCCGGTTC CTCCAGCTCAATTGGCCCGAACTTGCCCACGACATCCGCACCGGGAACCTGAATTCCCGGATCACTGACCCGACGTTAAA GGGTTGCATGAAAGAGATCCTAAAACCCGACCCGGAATTGGCCTCGTTTGTAGCGCGTGAATGTTCCAAGGAAGATTGGG AAGGAATGATCACGAGGATTTGGCCTAACACCAAATACCTTGATGTGATTGTAACGGGCGCAATGGCACAATACATTCCC ACTCTCAACTACTATAGTGGAGGTTTACCAATGGCATGCACCATGTACGCTTCCTCAGAGTGCTACTTCGGGCTCAACCT GAACCCGATGTGCAAGCCTTCTGAGGTTTCGTACACAATAATGCCAAACATGGCCTACTTCGAGTTTCTCCCATGA
Protein sequence (LotjaGi2g1v0287900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAVDSTLSSPLGPPACEKDAKALQFIEEMTRNADAVQERVLAEILSRNANTEYLKRFHLDGATDRETFKSMVPVITYEDV QPEIQRIANGDRSPILSAQPISEFLTSSGTSAGERKLMPTIKEELDRRQLLYSLLMPVMNLYVPGLDKGKGLYFLFVKSE SRTPGGLLARPVLTSYYKSQHFKTRPYDPYNVYTSPNEAILCPDSFQSMYTQMLCGLIERNQVLRLGAVFASGLLRAIRF LQLNWPELAHDIRTGNLNSRITDPTLKGCMKEILKPDPELASFVARECSKEDWEGMITRIWPNTKYLDVIVTGAMAQYIP TLNYYSGGLPMACTMYASSECYFGLNLNPMCKPSEVSYTIMPNMAYFEFLP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 371 | 366 | 6.7E-226 | – | |
| PANTHER | 6 | 371 | 366 | 6.7E-226 | ||
| Pfam | 26 | 371 | 346 | 5.1E-127 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0287900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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