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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0288200 |
| Transcript ID | LotjaGi2g1v0288200.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Basic helix-loop-helix transcription factor; TAIR: AT1G68920.3 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9CAA9|BH049_ARATH Transcription factor bHLH49; TrEMBL-Plants: tr|K7K2A6|K7K2A6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0288200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:76150129..76154834) extracted from Lotus japonicus Gifu genome v1.2.
GCACTTGTTTCAAGGTGTAATAAAGGACAATGGAATAAGATAAGAGGAAAAACACCTAATGAAATAGTTGGCAATGTCAG TTGCAAGCTCAAACTGCTATGATTATCACTCAAAGTTGCATATTTAGTGACTTAAATATACTGCAAAAAAGGAGCCAAAA CAAAACAATGATTATTAATTTCTCAAAGTTGAGGAAGAAGAGCTTAAGGGGCAGGTCATTTTATTAGTAGTACTATAATA TTTTACAGTAAGCAATGGCGGTGGTTAATCATCAAAAGCTCTCATTTTTATGTAAGCGTGAGGTATATAAATGGAGGTTC TTTCTTTCCCATTACTCTTTTTTTCCCTTCACATTGGTTTGGTTTGGTTTGGTTCCTGTGCTTTTTTCTGTCACACTTTC CCTTTTTTCTTCTCTATAAAAAAAATCCAAGCTTTTTTAGATTTCACTGTTAAAAGCTACCAGCTTTAAGCTTCTTTTGA ACCCCAGGTTTGTTATGAAGATGGGTTTTGATTGAATAGTGTTTTGATTTGTGGGAAAAGCTTGAATGGAAGGCAGGGTG CTAAAAGTAGCACAGGATCATTAGAAATGGGTATCTTTCTCTTCCCACTTTATAAAGTTGTCTCCTTTATTTCTTCTTCT TGTTGTTTTTGTTTAGTTTAGTTTCTCTCTCCCTTGAAGGTTTTGGGTTCTGCAACTCTGACCAGGGCCTGAATGGGAGG AGGGTATTTATTATGCTGAAATCAATGTTGTTTGCATAATTGACTGCTTCCATGGACTTCTTTTCAGCTCTTTCTTTGAA GAACAGTCTTTTTTAGCTTCTCTCTCTCTTCATGGAGGGGCCTTCTTTATGAGAATTTGGTACTTCATGTTCAGGGTTGG CTTTGGAAATGGTAGCTGCTAAACTCGTGTGAAGCTTTTGGTACATCTTTTCGGTACTTGGATTTTGTTTCAACCCTTTG GCAAACATCATTAAATGAACCTGGTTGGTCACTCTCTCTCTCTTGTTAACTTCCCTCACTTCAAACTTGAACAAGTTTTA GTTTCATAGTACTCAGAATTCTGTTTAAGGTTTTGTTCAATTTGTGTTGGGACTTTGGACTAGTGAAGTTTAATTGTAAT TTGTAACTAGTTACCATTTGGCCTTTGTTGAAGGTGATTTTGACAAATTTTATCTGTTTTCATTGCTAGTTATTGTAAAA AGATCATTGGAAAGAACCTGCTTTGATATTACAGTTAAGGGTAGTTGGATATGAGTGACAAAGAAAAGTTTGAGCTAGAT AGAAACGAGGATCCTATGAGTTATTCTACTGGTGTGCCCTCAGATTGGAGATTTGAGGGTGCCAATCTTGCAAATTCATC TGTTGGTTTTGTCAGCAGAGGGGATTTGATTGGTTCTTCTTCTTGTTCCTCTGCCTCAATGGTGGACTCATTTGCTCCAA ACTTTTGGGAGCATCATCCCACCAATTCCCACAACTTGGGATTCTGTGACATCAATGTCCACAACAATAGTGGAAGCTCT TCAAACATGTCTGGAATCAGAAAAGATGGGTTTGAAATGGGTTGGAACCAGGGTAACACTTTGTTGAAAGGGGATGGTTT TTTACCAAATGGACTATTTCCTCAAACTTTGTCTCAGTTTCCATCTGATTCTGGGTTTATTGAGAGGGCTGCAAGATTCT CATGCTTCAGTGGAGGGAATTTTGGTCCTATGGCAAACTCATATGAGATTCCCCACCCCACGGGCCTGTATGCGGGCCAT GGATTGCAATCAGCAGCTGGAGGACAATCTCAAGAGTGTGAACTAAATGTACTTGAAGCTTCAAAAGCTGTGTCTCCATC TGTTGAGCATTTAGCTACTAAAGGAAGCCCTTACAAGAATGATCAAAGAAGTGAAAGTCATGGTGTGTCTCAAGATGAAG GGAAGCAGCCTCTTGGTAGGCCTGCTAATGATTCTGACAGAGCTGAATCTAGTGACGATGATGGTGGCGGTGGCGGCGGC CAGGATGATTCCCCAATGTTGGAGGGTACTAGTGAGGAGCCTTCTGGTAAAGGACTAAACTCAAAGAAAAGGAAAAGAAT TGGGCAGGTATGACTGATTTGTGATTTGTATAATGCTGTATATTTGATTATGTGAAGATATTTCCCCGACATATGCTGAT AATGATAAAGCTATATTTTTGAACTGTATCCTTTTGGTAGGATGCTGATAATGATAAAGCCAATGGAGCTTCAGAACTTC ACAGTGAAGGCGCGAAGGATAACTCCGAGAGTCAACAGAAGGCAGATAAACAAACAACCTCAGCAGCCAAGGCTTCAGGG AAGAATGCCAAACATGGTTCTCAAGCTTCTGATCCAGCCAAGGAGGAATACATACACGTTCGGGCTCGCCGGGGTCAAGC AACAAATAGTCACAGCCTTGCAGAGAGAGTAAGATATTAAGAAATTTGATTTGCAATGAAAAAGTTTTTTGATGAAGAAT TTTAAATCAGATTTTTCACTGCAGGTGAGGAGGGAAAAGATAAGTGAGAGGATGAAGTTCCTTCAAGATCTTGTACCTGG ATGCAGCAAGGTTGCTTCTAAATTTCACTATGTCATATTCTTATCATATTTAGGTGTTGCTTTGTTTTAATAGGAAATTT GTTGATGTTTGTAGGTCACTGGCAAGGCTGTGATGCTAGATGAAATCATCAACTATGTACAGTCACTTCAAAGACAGGTT GAGGTACGGTGAAAGCTTATCTTCCTCTTTGTCCACTAGTGATTTTTTAAGTTATCTACCTGTAACTGATTTGTGCTGTA TGTTTAGTTCTGCTTCAGCAACCACTTATATTTTCATAGAACTTCTCATGAGAATCTTTGACAAACATGGTATTCTTATA TGTAAACCTCATTTAGATTCTTATATGTAAACCTCATTTAGAATGATAACTCCTGATAACTTATATGATAACTGTCATCT TTGTTGCGTTTTGGATGAAGGTGAATAATATCAAGATAAACTGTTATACCAACTACCTTTCAAATTCAATTGATACTTGA CATATATTTTAGAACCTTTTTGCATTTCTATTCTAGTTAAATTGATCCACACACCTTTTTCCTTTTGGCAGTTTTTGTCC ATGAAACTTGCAACAGTAAATCCCCGACTGGATTTTAATATTGAAGGACTTCTTGCTAAAGATGTAAGTTGTTAATTTAT TTGATCATTGAGTAAAAAGCTCATGCCATGTCCAAAAAAGTGCCTGATGTCACCTTAATGTGTCCTGAACATTACGCCAG ATTCTTCACCAACGGCCTGGTCCTTCGTCAGGACTAGGTTTTCCCCTAGAAATGTCTATGGCTTTTCCTTCATTACATCC ATCTCAACCAGGGCTGGTTCAGTCAATTATTCCTAACATGGGGAACTCATCTGATATCCTTCGGAGAGCCATTCATCCAC AGTTAGCAGCACCGTTGAGTGGAGGATTCAAGGAGCCAAATCAGGTATTGGTCCATTGCAGTTGCAAGCACTGTAATTTC CTTTGCACAGCTCTTTTTCATGAGTAGACACTTCGAACTTTGGTTTTTGCACCTATTTATTGTAATTAGAAATGACAGAT TTATGGATGAACAACATATGATGTAGACTGTACATGACGATCGACCTTACTGACATTCGTATTACATTGACCTTCCTTTT TAGTTATATAGAGCATGTTTGGATACACAGTAGAAAACCTCGATGAAGCCAAAGTCACGGTGGAGAGAAGCAGCTTCCCT TAGCTTTAGTGACCGTCCACCATGATTTCGGCCTCACGGTGGTTTTCCACCGTACATCCAAGCATGCACATAGCAAATTA CCAATGTTTCCGTGAAATAATTTACTTCCCCTAGGTTTTGCCTGACTATGTTTTACAATCTTGATGTGCATACTTTAATA CAATTTGCAATAGCTGCCTAATGTGTGGGAGGATGAGCTTCACAATGTTGTACAGATGAGCTTTGCAACCACTGCTCCCA TGAGTAGCCAAGATGTGGATGGTATACATTCCCCAACAAATAACCGCTTTTTGAAATTACTATTTTCAAATCAAATTACA ATTTTACACGCTCTTGCAGGTAGTGTTGAAGCAAGCCAGATGAAAGTTGAACCTTAATGTTTAGTCTACTCTACATGCTA TTCATCTTTGCTACTACTACTACAGCTTGTGTTTTGACTTTGATTCTTGTCAGATGGAAATAACTATGGTCACAGTTTAT ATGACTTACCAAACTTAAAAGGCCATAACCACAATCCCCTGTCCTGGTGTGAAGGCTATGCAGAGGAGAGACTCTAGGTT AGAGAAAGAAAATGGAGCAGTATTCTTGGATGTTAATTTCTTTTAGAGAGTGAATGTATGTATCATATGTTTAGAAGTGG AAGTCTATTTTACCAAAATAGGTTTGCTTACTAAATATATTATAGAATGTAAAGACATGATCTCACTGAGTTTGATCAAC CAGAAGGAGAAATGCAAAAGCATGTTCTTTTGATTTGCTTCAGTTGCTTGGTGCTCTCATGTAATGTCATGTTTTCTTAC CCAACAATTGGCTATATTACATTCTTTCACAGAACATGTTTGGATTTAGATGACAGTGTTAGTTGATGACTTGTACAGAA TATTTTGGGACTTATGTAAGGATATGATAATCTAAAAATTGATTTTGGTAATCCATAGTTTTAACC
CDS sequence (LotjaGi2g1v0288200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTGACAAAGAAAAGTTTGAGCTAGATAGAAACGAGGATCCTATGAGTTATTCTACTGGTGTGCCCTCAGATTGGAG ATTTGAGGGTGCCAATCTTGCAAATTCATCTGTTGGTTTTGTCAGCAGAGGGGATTTGATTGGTTCTTCTTCTTGTTCCT CTGCCTCAATGGTGGACTCATTTGCTCCAAACTTTTGGGAGCATCATCCCACCAATTCCCACAACTTGGGATTCTGTGAC ATCAATGTCCACAACAATAGTGGAAGCTCTTCAAACATGTCTGGAATCAGAAAAGATGGGTTTGAAATGGGTTGGAACCA GGGTAACACTTTGTTGAAAGGGGATGGTTTTTTACCAAATGGACTATTTCCTCAAACTTTGTCTCAGTTTCCATCTGATT CTGGGTTTATTGAGAGGGCTGCAAGATTCTCATGCTTCAGTGGAGGGAATTTTGGTCCTATGGCAAACTCATATGAGATT CCCCACCCCACGGGCCTGTATGCGGGCCATGGATTGCAATCAGCAGCTGGAGGACAATCTCAAGAGTGTGAACTAAATGT ACTTGAAGCTTCAAAAGCTGTGTCTCCATCTGTTGAGCATTTAGCTACTAAAGGAAGCCCTTACAAGAATGATCAAAGAA GTGAAAGTCATGGTGTGTCTCAAGATGAAGGGAAGCAGCCTCTTGGTAGGCCTGCTAATGATTCTGACAGAGCTGAATCT AGTGACGATGATGGTGGCGGTGGCGGCGGCCAGGATGATTCCCCAATGTTGGAGGGTACTAGTGAGGAGCCTTCTGGTAA AGGACTAAACTCAAAGAAAAGGAAAAGAATTGGGCAGGATGCTGATAATGATAAAGCCAATGGAGCTTCAGAACTTCACA GTGAAGGCGCGAAGGATAACTCCGAGAGTCAACAGAAGGCAGATAAACAAACAACCTCAGCAGCCAAGGCTTCAGGGAAG AATGCCAAACATGGTTCTCAAGCTTCTGATCCAGCCAAGGAGGAATACATACACGTTCGGGCTCGCCGGGGTCAAGCAAC AAATAGTCACAGCCTTGCAGAGAGAGTGAGGAGGGAAAAGATAAGTGAGAGGATGAAGTTCCTTCAAGATCTTGTACCTG GATGCAGCAAGGTCACTGGCAAGGCTGTGATGCTAGATGAAATCATCAACTATGTACAGTCACTTCAAAGACAGGTTGAG TTTTTGTCCATGAAACTTGCAACAGTAAATCCCCGACTGGATTTTAATATTGAAGGACTTCTTGCTAAAGATATTCTTCA CCAACGGCCTGGTCCTTCGTCAGGACTAGGTTTTCCCCTAGAAATGTCTATGGCTTTTCCTTCATTACATCCATCTCAAC CAGGGCTGGTTCAGTCAATTATTCCTAACATGGGGAACTCATCTGATATCCTTCGGAGAGCCATTCATCCACAGTTAGCA GCACCGTTGAGTGGAGGATTCAAGGAGCCAAATCAGCTGCCTAATGTGTGGGAGGATGAGCTTCACAATGTTGTACAGAT GAGCTTTGCAACCACTGCTCCCATGAGTAGCCAAGATGTGGATGGTAGTGTTGAAGCAAGCCAGATGAAAGTTGAACCTT AA
Protein sequence (LotjaGi2g1v0288200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSDKEKFELDRNEDPMSYSTGVPSDWRFEGANLANSSVGFVSRGDLIGSSSCSSASMVDSFAPNFWEHHPTNSHNLGFCD INVHNNSGSSSNMSGIRKDGFEMGWNQGNTLLKGDGFLPNGLFPQTLSQFPSDSGFIERAARFSCFSGGNFGPMANSYEI PHPTGLYAGHGLQSAAGGQSQECELNVLEASKAVSPSVEHLATKGSPYKNDQRSESHGVSQDEGKQPLGRPANDSDRAES SDDDGGGGGGQDDSPMLEGTSEEPSGKGLNSKKRKRIGQDADNDKANGASELHSEGAKDNSESQQKADKQTTSAAKASGK NAKHGSQASDPAKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVE FLSMKLATVNPRLDFNIEGLLAKDILHQRPGPSSGLGFPLEMSMAFPSLHPSQPGLVQSIIPNMGNSSDILRRAIHPQLA APLSGGFKEPNQLPNVWEDELHNVVQMSFATTAPMSSQDVDGSVEASQMKVEP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 99 | 520 | 422 | 2.4E-192 | ||
| PANTHER | 99 | 520 | 422 | 2.4E-192 | – | |
| MobiDBLite | 194 | 332 | 139 | - | – | |
| MobiDBLite | 229 | 243 | 15 | - | – | |
| MobiDBLite | 267 | 305 | 39 | - | – | |
| MobiDBLite | 306 | 325 | 20 | - | – | |
| Gene3D | 342 | 415 | 74 | 1.8E-13 | ||
| CDD | 343 | 400 | 58 | 7.99485E-12 | ||
| SUPERFAMILY | 343 | 414 | 72 | 6.8E-17 | ||
| ProSiteProfiles | 345 | 395 | 51 | 15.485 | ||
| Pfam | 348 | 396 | 49 | 5.4E-6 | ||
| SMART | 351 | 401 | 51 | 7.7E-10 | ||
| MobiDBLite | 514 | 533 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi2g1v0288200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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