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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0288500 |
| Transcript ID | LotjaGi2g1v0288500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribonuclease H; TAIR: AT3G24255.4 RNA-directed DNA polymerase (reverse transcriptase)-related family protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|F4NCL3|F4NCL3_BETVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0288500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:76182351..76184701) extracted from Lotus japonicus Gifu genome v1.2.
TCTCTTATCTACCAAACAAGCCCTAAATGAGTGATAGGAGACCATTTTGGGAAAGAACGCTGATTCCAATGCACACTATC AAACCTAATGTTGTGCCAATGGTATGTCAGTGATGTTAAATCAAGTGGTCGACGATCCTGATCCGTGCGGGGTGTTTATT GGAGGGGAGCTGTATTTAAATCATTTACAGTTCGCAGACGATGTCTTGATCTTCTGTGAGAATGATTTTCTACAATTGGA GAGGCTTGCAGGGGTGGTGGATGCTTTTCTGTTTGTGACCGGGTTGAAGGTAAATTTTCACAAATCAGAGATCATTGGGG TAAAGGTGGAAGCGCAGTTGATAGAACAGGCAGCAGCTGATCTGAAATTTAGCATTGGAAGTTTGCCGGTTATGTACTTG GGATGCCCTTTAGGAGGAAATCCTCGCAGGAAAGAATTCTGGAATCCAGTGGTAGATAAATTGCAGCAAAAGCTTGGTTC ATGGAACTCAAAACTTTTGTCCTTGAGTGGTAAATTAGTGCTTTTGAAGGCTGCCCTTAATTCAATTCCCCTATATTATA TGGCTGTGTTTTGGGCTCCTGTAGGTGTTGTGCGGGTGTTTGAAAAAATAATGAGGGGCTTCTTGTGGGGCGTGGGTGAG GGGAAAAGAAAAATATCATGGGTGGCTTGGGAGGATGTGTGTAAGGGAAAGAAGTTTGGTGGGTTAGGAGTAGGCAAATT AGAATGCAAAAATAGAGCAATGCTACTGAAGTGGTTTTGGCGTTTTGGTCGTGAGCAGGGTTCTTTATGGCGTAGGGTGG TTTGCGCCAAGTATGGTATGGATGAACAATTGGTTTGCTTAAGGGTGGACCGTGTGCCACAATCTGTGTGTTCTATTGTT GCTGCAGATATTATAAAGCTCTTCAAGGACAATTCTGACATCTCACGCATGTTTAAAGAGGGATTGGCGTGCAAATTAGG GGATGGCACAGGCATCTCTTTTTGGTCAGATTCATGGAGCGAGGTGGGCATCTTGCAGCAGGCTTTTCCACGGGTATTTG CACTGTCACAAGATAAGGGTGCAAGGGTGGCTGATGTGGGAGAAGTGGGCGATGGAAAGTGGAATTGGACGCTGTCTTTT CGCCGTAATTTTTTTGATTGGGAGCAGATTCAATATGCTGATTTTTTGCAGGTTTTAAACTCTATTATACCAGCAAAAAA CAGCAATGACAATGTTATATGGAAGGGGGATAAACTTGGGCTGTTTACAGTAAAGAGAATTTGTGAAAAAGTAGAAGAAC AAGCCTTACAAACAAGTTGGCGAGTTCCCTGTAACGTGGAAAAATGGTTGCCTGCGAAGGTAGCATTATTTGTGTGGCGG GTTCAATGTAACCGTGTGGCAACATTGGAAAACTTGCGGCGTAGGGGTGTGCAATTGGCCATGGAGGAGAGATGCGTCTT CTGCCATATTGAAGAAGAGACCACGGGGCATTTGTTCTTACATTGTCCAAAGGTAACTTTTTTATGGAATCAGATTGTCC AAAGAGAAGGCGTTTTATGGGCTATTCCCGGTGACATAGCGAGCTTGCTACATGTGTGGGGAGGCCTGTGTTCAAGAACT GATGTCCAGGTTTGGTGTTTGTTTCCTTATGCTTTGATATGGTCTTGTTGGATGGAAAGAAATTCCATTATTTTTAACCA AAAGGTTTTGTGTTTGGAGAGTGTGTGGGATATGATCCTAGTCAGGGTGTACTGGTGGGTTAAGGGCAACAGATCAGATT TTTCCTATTCTTTGGAGCAATTTATAGCTGGATTTGAATTTATTAAGCTGCACTCACAAGTTGTACAACGGGTTGCTGTG GTTTGGCAGCCTCCACCGGAGGGAATTTGGCAGCCTCCACCGGAGGGAATTCTGAAATTTAATGTGGATGGGGCATCAAA AGGTAACCCGGGACCAAGTGGTATTGGTGGTGTATTGCGAAATTCTGATGGTGATATATTGGGGTATTTCTCGAAATCAA CAGGTGTGTTGTGGGCATATGAGGTGGAAGTACATGCTATTCTCAATGCTCTATTATTCTGTTATCATCATAATTGTCAT AACGTGATTCTTGAAAGTGATTCAACATTGGCAATTGGTTGGACTTTGGATGGTAATAAAAGGTCGTGGAAGTTACAACA AATTTTTAATCAGATAGATTACCTGTGGCATTTGGTCTCTTGCGTAGGTATTCAGCATATTCTGCGGGAAGGAAACACTG TGGCAGATTTCTGGGCAAACCAGGGATGTGGTAGGGAGGATGTATTGTGGGTTTTATCTGAACCTTTGTTGTAGCTCACA TGAGAGAGTTGTTCTCATGATTCCTAATATT
CDS sequence (LotjaGi2g1v0288500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAGTGATGTTAAATCAAGTGGTCGACGATCCTGATCCGTGCGGGGTGTTTATTGGAGGGGAGCTGTATTTAAATCA TTTACAGTTCGCAGACGATGTCTTGATCTTCTGTGAGAATGATTTTCTACAATTGGAGAGGCTTGCAGGGGTGGTGGATG CTTTTCTGTTTGTGACCGGGTTGAAGGTAAATTTTCACAAATCAGAGATCATTGGGGTAAAGGTGGAAGCGCAGTTGATA GAACAGGCAGCAGCTGATCTGAAATTTAGCATTGGAAGTTTGCCGGTTATGTACTTGGGATGCCCTTTAGGAGGAAATCC TCGCAGGAAAGAATTCTGGAATCCAGTGGTAGATAAATTGCAGCAAAAGCTTGGTTCATGGAACTCAAAACTTTTGTCCT TGAGTGGTAAATTAGTGCTTTTGAAGGCTGCCCTTAATTCAATTCCCCTATATTATATGGCTGTGTTTTGGGCTCCTGTA GGTGTTGTGCGGGTGTTTGAAAAAATAATGAGGGGCTTCTTGTGGGGCGTGGGTGAGGGGAAAAGAAAAATATCATGGGT GGCTTGGGAGGATGTGTGTAAGGGAAAGAAGTTTGGTGGGTTAGGAGTAGGCAAATTAGAATGCAAAAATAGAGCAATGC TACTGAAGTGGTTTTGGCGTTTTGGTCGTGAGCAGGGTTCTTTATGGCGTAGGGTGGTTTGCGCCAAGTATGGTATGGAT GAACAATTGGTTTGCTTAAGGGTGGACCGTGTGCCACAATCTGTGTGTTCTATTGTTGCTGCAGATATTATAAAGCTCTT CAAGGACAATTCTGACATCTCACGCATGTTTAAAGAGGGATTGGCGTGCAAATTAGGGGATGGCACAGGCATCTCTTTTT GGTCAGATTCATGGAGCGAGGTGGGCATCTTGCAGCAGGCTTTTCCACGGGTATTTGCACTGTCACAAGATAAGGGTGCA AGGGTGGCTGATGTGGGAGAAGTGGGCGATGGAAAGTGGAATTGGACGCTGTCTTTTCGCCGTAATTTTTTTGATTGGGA GCAGATTCAATATGCTGATTTTTTGCAGGTTTTAAACTCTATTATACCAGCAAAAAACAGCAATGACAATGTTATATGGA AGGGGGATAAACTTGGGCTGTTTACAGTAAAGAGAATTTGTGAAAAAGTAGAAGAACAAGCCTTACAAACAAGTTGGCGA GTTCCCTGTAACGTGGAAAAATGGTTGCCTGCGAAGGTAGCATTATTTGTGTGGCGGGTTCAATGTAACCGTGTGGCAAC ATTGGAAAACTTGCGGCGTAGGGGTGTGCAATTGGCCATGGAGGAGAGATGCGTCTTCTGCCATATTGAAGAAGAGACCA CGGGGCATTTGTTCTTACATTGTCCAAAGGTAACTTTTTTATGGAATCAGATTGTCCAAAGAGAAGGCGTTTTATGGGCT ATTCCCGGTGACATAGCGAGCTTGCTACATGTGTGGGGAGGCCTGTGTTCAAGAACTGATGTCCAGGTTTGGTGTTTGTT TCCTTATGCTTTGATATGGTCTTGTTGGATGGAAAGAAATTCCATTATTTTTAACCAAAAGGTTTTGTGTTTGGAGAGTG TGTGGGATATGATCCTAGTCAGGGTGTACTGGTGGGTTAAGGGCAACAGATCAGATTTTTCCTATTCTTTGGAGCAATTT ATAGCTGGATTTGAATTTATTAAGCTGCACTCACAAGTTGTACAACGGGTTGCTGTGGTTTGGCAGCCTCCACCGGAGGG AATTTGGCAGCCTCCACCGGAGGGAATTCTGAAATTTAATGTGGATGGGGCATCAAAAGGTAACCCGGGACCAAGTGGTA TTGGTGGTGTATTGCGAAATTCTGATGGTGATATATTGGGGTATTTCTCGAAATCAACAGGTGTGTTGTGGGCATATGAG GTGGAAGTACATGCTATTCTCAATGCTCTATTATTCTGTTATCATCATAATTGTCATAACGTGATTCTTGAAAGTGATTC AACATTGGCAATTGGTTGGACTTTGGATGGTAATAAAAGGTCGTGGAAGTTACAACAAATTTTTAATCAGATAGATTACC TGTGGCATTTGGTCTCTTGCGTAGGTATTCAGCATATTCTGCGGGAAGGAAACACTGTGGCAGATTTCTGGGCAAACCAG GGATGTGGTAGGGAGGATGTATTGTGGGTTTTATCTGAACCTTTGTTGTAG
Protein sequence (LotjaGi2g1v0288500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSVMLNQVVDDPDPCGVFIGGELYLNHLQFADDVLIFCENDFLQLERLAGVVDAFLFVTGLKVNFHKSEIIGVKVEAQLI EQAAADLKFSIGSLPVMYLGCPLGGNPRRKEFWNPVVDKLQQKLGSWNSKLLSLSGKLVLLKAALNSIPLYYMAVFWAPV GVVRVFEKIMRGFLWGVGEGKRKISWVAWEDVCKGKKFGGLGVGKLECKNRAMLLKWFWRFGREQGSLWRRVVCAKYGMD EQLVCLRVDRVPQSVCSIVAADIIKLFKDNSDISRMFKEGLACKLGDGTGISFWSDSWSEVGILQQAFPRVFALSQDKGA RVADVGEVGDGKWNWTLSFRRNFFDWEQIQYADFLQVLNSIIPAKNSNDNVIWKGDKLGLFTVKRICEKVEEQALQTSWR VPCNVEKWLPAKVALFVWRVQCNRVATLENLRRRGVQLAMEERCVFCHIEEETTGHLFLHCPKVTFLWNQIVQREGVLWA IPGDIASLLHVWGGLCSRTDVQVWCLFPYALIWSCWMERNSIIFNQKVLCLESVWDMILVRVYWWVKGNRSDFSYSLEQF IAGFEFIKLHSQVVQRVAVVWQPPPEGIWQPPPEGILKFNVDGASKGNPGPSGIGGVLRNSDGDILGYFSKSTGVLWAYE VEVHAILNALLFCYHHNCHNVILESDSTLAIGWTLDGNKRSWKLQQIFNQIDYLWHLVSCVGIQHILREGNTVADFWANQ GCGREDVLWVLSEPLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 82 | 734 | 653 | 4.3E-72 | – | |
| Pfam | 381 | 468 | 88 | 8.9E-14 | ||
| ProSiteProfiles | 593 | 723 | 131 | 10.558 | ||
| Gene3D | 596 | 723 | 128 | 3.2E-23 | ||
| SUPERFAMILY | 597 | 724 | 128 | 1.1E-19 | ||
| CDD | 600 | 719 | 120 | 5.28055E-27 | – | |
| Pfam | 600 | 720 | 121 | 7.8E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA-DNA hybrid ribonuclease activity | Catalysis of the endonucleolytic cleavage of RNA in RNA-DNA hybrids to 5'-phosphomonoesters. |
Expression pattern of LotjaGi2g1v0288500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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