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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0290300 |
| Transcript ID | LotjaGi2g1v0290300.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Basic helix-loop-helix transcription factor; TAIR: AT1G69010.1 BES1-interacting Myc-like protein 2; Swiss-Prot: sp|Q9CAA4|BIM2_ARATH Transcription factor BIM2; TrEMBL-Plants: tr|A0A0S3T203|A0A0S3T203_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0290300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:76375547..76379088) extracted from Lotus japonicus Gifu genome v1.2.
ATGAAAGCAGGGAAGTCGAACCAGGAAGAAGACGAGTACGAGGAAGAAGACTTCGGTTCTTCTCAGAAACATGGTCCTTC TTCTGCCCCTAACACCAACAAAGGTAACCTTTTTAGTTAAAAAAACACATTTTTGTACCTAGTTCTTGTGTTATTGTTAG ATCCGAATTGTAGGATGTTTTATTTGTTTTAGACGAGGTTTTGTGGATTCTTCTCATGTTTTTTTATAATATATAGCTTG GATTGTATTGAATCTACTGATATTGATATGTGTATCCCATTTTAATTTATTCTTTCTGGAAAATTTATTGAATTTGGTGA ATTTAGTTTGTTGGGGTTACTGGGATTGGATTTATTTGTGATCTTAAGTTCATATCTGGGTTTGTTAAAGCAGATGCAAA AGCTACTGATAAGGCTAGTGCAATAAGATCGAAACATTCTGTAACCGAGCAGCGAAGAAGGAGCAAGATCAATGAGAGGT ATGTACCACACTATTGATAAGACTACTGCTGGAGTGCATTGAGTGTTCTAGTGTAGGTTGCTTGAAAATGAACTAACAAA TTGACTTATACCTTATTATTAGCATTGGATAATTTAAATCGAATGTAATTGTTGATTCTCATAAGAGTTTTTGAAAATTG ATGCATAGTAGCTGTAAAAAATATAGAGCGTGTTTGTTTCATGCCGGTCAACACTCAACGAGATAAGATCCTGCTTGTCC TTTTGTGTGTTTGGGATTTGTGAAATTCTGTGCGCGTTTATGCAAAATGGTTTTTTCCAAGCACCCATGTAGATTTGTCA GCAATTTTACATTGCTCTAAATTTTTTCACTTCATTGCCTCAGTTTCCTTTTGTTTTAATGAGTCATACTGCAGTCTTGG TCGCGAGGATTTTGGGAGTTTGTTTAGGTGTTTTTCCCCACATGAGGGACAAATGTCATGTCAATTAATGTGAAGGGTAT ATAGATAATGTGCTGTGAGAGTGTTAGAAGCACAAATTCAATATCTCATAGAGCTCTTGTATTACTTTCTCTTTTACTGA TCAAAACCTTTTGACATCAAAGTCTGAATGGTTATATGATGTGCCACACAAAAAGTTTGTAATGATTTTTATGTGGTCTT TTTTTTATTTCTTTAAATAATCTTTTTAGAGCTTACCTAGTGGGAAGGGCTTATTTTGTTGTGATTTTTTGAGAGCTTAA AAATTTCAGTGCTTTCAGTTTAATTATTCATTATTTGTCAGTAAGTTGGTGATTGATGATTGGTGACCCTTTCCTTCAGA TTTCAGATACTGAGGGATATCATACCTCATAGTGAGCAAAAGAGGGACACAGCGTCATTTTTATTAGAGGTACATTTTGT AATGTGAGAAATAATTTTGTTCAAATTGGTTTGGAATAGATTTGAATCAGTTAATTTATCTTGTTTCTTTGCAGGTGATT GAGTATGTTCAGTACTTACAGGAGAAGGTGCAAAAATATGAAGGCTCATACCCGGGTTGGAGTCAAGAGCCCTCAAAGTT GATGCCATGGGTAAATTAGAAAAACCATAATGTTTTAGGATCATGTGCCTTTGACTATGCAACCTCCTAATTTTGAAATA CTTATAAAAAAACAAAAACACTTATTTATCACTAAAAAAATGACGATATGAAATTTGGTTAACCTTAGTATGCACAAACA TGTGAGCACCAATATGGATTAATGAAAACTTTCATTGAAAATCAACATTTATACTGGTTCATTGTATCTGTCCAAATGCA GTCTGGATTTCTATTTGTCTTTGATCTCAATTATTTGATCTATTAGGTTGTTTTATTGATTATTTGTGAATGGTTTGTCT TTTTAGTCTCTTCACTGAATGGTTCTCGCTGATTTGTCATTTTGTTTGTTGGTTGATCCCCTATTAAGCTTTATTTTAAC TGTCTTACTTTTTTTCCCCATCAATTGAGATTTTAATTTGCCCTCAGGTTTGTTTAAGCATGTTACTGTTGGTCAAACTT ATCAACTTAAGTAGTTAACTGATATTATAGAGTAATTGGGTCACGAACCAACTATGCCAAAAGTTTAAGTTGTTGGATAA AGGACACATGAATGGGTATGGGTTCATATTATATTTCTAATACGCCCCCTCACGCATGAGCTCGCTTGAGCTTGAAGCGT GGACAATGCACAGGCTCCCTTACCTTGTGTTGATACTTGACATTTTTTGTTAGAATAATGAGGGTAACAATGACCGAACT CTAGACACTCGGTTAGAGAGGCTCTGGTATCATGTCATGAATCAACTATCCCAAAAGCTTAAGCTGTTGGGTAAAAGACA CTTGAATATTTTTATATTATATTTCTAACAATATGCAATTATTTTAGACGATGGAACTTATATACCAGTTAAAATGTTAT TGTTTTTTTAGCTTTCTTACCCACTATTATGTTACAGAGAAACAGTCATTGGCGTGTCCAAAACTTTGTTGGTCAACCTC CTGCTGTGAGGAATGGTTCGGGTCCAGTATCACCTTTTCCTGCAAAGTTCGACGATAGCAATGTTAGCATCTCTCCAACC ATGCTTAGTGGCACCCAGAATATGATAGATCCTGATCAGAGCAGGGATATTCTCAGCAAGACAGCAGAGAGGCAACCTGA TTTAGTAAGCAAGGGAATACCTCTGCCCTTGGCTATGCATGCAAACATGTCTGTTCCTGTAAGAAGTGATGGTGTACCTG CCCATCCTCTTCAGGGAACGCTTTCTGATGCACAATCAACTGAATGCCCAGCAACTAGTGAGCCACAGAACCAGCAGGAC GAACTGACAGTTGAAGGAGGGACAATTAGCATTTCAAGTGTATACTCCCAAGGGTGGGTAATTGCTTAACAATATCTTTT TTAATATCTGTAAATATCGATAATTTAATTTGTCTTTTGAAAAGCTGTTGATCATATAACTTTTTGTTTTTGTCATTTTG AAGCATGAAATGTGGTTTACATTCTGAAACCATCAGTGAGTCAAGTAATAAGGACTTCATTACATTGATTTGTGTAAATT GATGAGCATAGTTGCCATGAGCCCATGACATTGCTTGTAGTGATGAGATTTCTAATGATCCTGAGGAAAGAAATACAAAC TGGAGTTCTTGATTTTGATGTTATTACTGCTATTTACTTGTAGTAGTACTATTTCTACACTTCTTAGAAATGGCTTAGAT CAATACTTATCTGCTAATGCCAATTAGAAAATGCTGTAGCTTTTGTTGAAGTTTATTTCTCCTCTTTAGTGACATGTGTA GAATCATTCCTTGATGAACAGGCTGTTGAACAATCTAACTCAAGCGCTACAGAGTGCTGGTTTAGATCTGTCACAAGCTA GCATCTCTGTACAGATTAATCTTGGGAACCGGGCGAACATAGGACCAAGCGGTGGAACCTCTTCTACCAAGGTATATAAT GGCACTTTGTCTTCATTAATACTTGGACCTTTGTGCTAGCAAGATGTCTAATAAGAGGAATTTGATACATTTAGTATATA TAGATATGCTGGTATAAATTAA
CDS sequence (LotjaGi2g1v0290300.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAGCAGGGAAGTCGAACCAGGAAGAAGACGAGTACGAGGAAGAAGACTTCGGTTCTTCTCAGAAACATGGTCCTTC TTCTGCCCCTAACACCAACAAAGCAGATGCAAAAGCTACTGATAAGGCTAGTGCAATAAGATCGAAACATTCTGTAACCG AGCAGCGAAGAAGGAGCAAGATCAATGAGAGATTTCAGATACTGAGGGATATCATACCTCATAGTGAGCAAAAGAGGGAC ACAGCGTCATTTTTATTAGAGGTGATTGAGTATGTTCAGTACTTACAGGAGAAGGTGCAAAAATATGAAGGCTCATACCC GGGTTGGAGTCAAGAGCCCTCAAAGTTGATGCCATGGAGAAACAGTCATTGGCGTGTCCAAAACTTTGTTGGTCAACCTC CTGCTGTGAGGAATGGTTCGGGTCCAGTATCACCTTTTCCTGCAAAGTTCGACGATAGCAATGTTAGCATCTCTCCAACC ATGCTTAGTGGCACCCAGAATATGATAGATCCTGATCAGAGCAGGGATATTCTCAGCAAGACAGCAGAGAGGCAACCTGA TTTAGTAAGCAAGGGAATACCTCTGCCCTTGGCTATGCATGCAAACATGTCTGTTCCTGTAAGAAGTGATGGTGTACCTG CCCATCCTCTTCAGGGAACGCTTTCTGATGCACAATCAACTGAATGCCCAGCAACTAGTGAGCCACAGAACCAGCAGGAC GAACTGACAGTTGAAGGAGGGACAATTAGCATTTCAAGTGTATACTCCCAAGGGCTGTTGAACAATCTAACTCAAGCGCT ACAGAGTGCTGGTTTAGATCTGTCACAAGCTAGCATCTCTGTACAGATTAATCTTGGGAACCGGGCGAACATAGGACCAA GCGGTGGAACCTCTTCTACCAAGGTATATAATGGCACTTTGTCTTCATTAATACTTGGACCTTTGTGCTAG
Protein sequence (LotjaGi2g1v0290300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKAGKSNQEEDEYEEEDFGSSQKHGPSSAPNTNKADAKATDKASAIRSKHSVTEQRRRSKINERFQILRDIIPHSEQKRD TASFLLEVIEYVQYLQEKVQKYEGSYPGWSQEPSKLMPWRNSHWRVQNFVGQPPAVRNGSGPVSPFPAKFDDSNVSISPT MLSGTQNMIDPDQSRDILSKTAERQPDLVSKGIPLPLAMHANMSVPVRSDGVPAHPLQGTLSDAQSTECPATSEPQNQQD ELTVEGGTISISSVYSQGLLNNLTQALQSAGLDLSQASISVQINLGNRANIGPSGGTSSTKVYNGTLSSLILGPLC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 301 | 301 | 7.8E-145 | – | |
| PANTHER | 1 | 301 | 301 | 7.8E-145 | – | |
| MobiDBLite | 1 | 58 | 58 | - | – | |
| MobiDBLite | 22 | 38 | 17 | - | – | |
| MobiDBLite | 40 | 58 | 19 | - | – | |
| SUPERFAMILY | 43 | 116 | 74 | 6.94E-18 | ||
| Gene3D | 44 | 115 | 72 | 3.6E-20 | ||
| ProSiteProfiles | 45 | 95 | 51 | 15.675 | ||
| Pfam | 47 | 96 | 50 | 5.0E-13 | ||
| CDD | 47 | 100 | 54 | 6.41938E-15 | ||
| SMART | 51 | 101 | 51 | 4.1E-11 | ||
| MobiDBLite | 215 | 239 | 25 | - | – | |
| MobiDBLite | 219 | 239 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi2g1v0290300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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