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LotjaGi2g1v0291300.5

Overview

Field Value
Gene ID LotjaGi2g1v0291300
Transcript ID LotjaGi2g1v0291300.5
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description Adenine nucleotide alpha hydrolases-like superfamily protein, putative; TAIR: AT1G69080.1 Adenine nucleotide alpha hydrolases-like superfamily protein; Swiss-Prot: sp|Q9FKG5|PUB51_ARATH U-box domain-containing protein 51; TrEMBL-Plants: tr|A0A151TRW1|A0A151TRW1_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0291300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:76529631..76530871) extracted from Lotus japonicus Gifu genome v1.2.

TGCTCTTTCTCTGTTATAATAATTGGCGCCTTCTCCAACAACATTCCAAGACATGGGTAAGAGAGGAACAAGGTTACCAG GCTTCTGCCTTAACAGAATTAGGCCTCATGCCCGAGTGCGTTCGCCGCCTATACAAGCCAAGCTAGACACAAATGCCAGT GAAACTGATAAAAAAACTGAGAATTCCTGCAGTGCTTGTGAGGAAAAATCAGATGATGGGGTGAAACCAGGGTCTATGAT TGGTAGGAAGATCATGATTGTGGTTGATTCTAGCCTTGAAGCCAAAGGTGCTGTGCAATGGGCACTCACTCACACAGTTC AGAACCAGGACATTATAATTCTTCTTCATGTGATGAAGCCTTCTAAACAAGGTGCAAAGCTAATCATACCATTGTTCATT CTTCAAATTTGAGTTAGTTTGATTATGACAGAAAGTGATCAGGTATGGTTCACTCAATGTAGCAGCCACTGAGGAAGGGT CCAGCAAGGAGATAGATCCAAGGGCTTATGAACTTGCTTCCTCCTTCAAGAACATGTGCAATGTGAAGATGCCAGAGGTG AGTTTAAATACCTTATGTAAATAGGCTCTATGGTATATACCATTATTGATAGTACTCAACGTTCTCTTAATACCATGTTT GGATGAGCTTCTTGTAACTGAGTTAATTCTGAAACCAAAAAGTTATTCAAAGAAGCTTCTACTCAAAATTGATTCTAGCT TATTAACGCCGGTTTCTGATGTGCCTCAAAATGTGAAATTAATAAAAAAGTATTAGGAAGGGCATGTGAATTTGTTGCAT TTTTATGAATCAAGAGTTCATCCCATGTTGGAAAGTTATTAATGTAAATCAGGGAGATATCCCGCGTGTGCATATATATT AAGGCTCATGTTAATGGAAATATTTTACTTTATATAAATAAGATAGTTAAAGGACGAGATTAAATGATTCTGTTAGGTAC AAATTGAGATTGCTGTTACAGAAGGAAAGGAAAAGGGTCCAACAATAGTGGAGGAAGCAAAGAAACATGGCGCGGGGCTT CTGGTTTTGGGGCAGAAGAAGAGGTCCACAACGTGGCGTCTTCTAATGATGTGGGCAGGCAACAGAGTTACTGGTGGGGT GGTGGAGTATTGCATCCAGAATGCTCATTGCATGGCAATTGCTGTGAGAAGAAAAAGCAAGAAAATTGGAGGCTACATGA TTACTACGAAGCGTCACAAAGATTTCTGGCTCTTAGCTTAA
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0291300.5) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGTAAGAGAGGAACAAGGTTACCAGGCTTCTGCCTTAACAGAATTAGGCCTCATGCCCGAGTGCGTTCGCCGCCTAT ACAAGCCAAGCTAGACACAAATGCCAGTGAAACTGATAAAAAAACTGAGAATTCCTGCAGTGCTTGTGAGGAAAAATCAG ATGATGGGGTGAAACCAGGGTCTATGATTGGTAGGAAGATCATGATTGTGGTTGATTCTAGCCTTGAAGCCAAAGGTGCT GTGCAATGGGCACTCACTCACACAGTTCAGAACCAGGACATTATAATTCTTCTTCATGTGATGAAGTATGGTTCACTCAA TGTAGCAGCCACTGAGGAAGGGTCCAGCAAGGAGATAGATCCAAGGGCTTATGAACTTGCTTCCTCCTTCAAGAACATGT GCAATGTGAAGATGCCAGAGGTACAAATTGAGATTGCTGTTACAGAAGGAAAGGAAAAGGGTCCAACAATAGTGGAGGAA GCAAAGAAACATGGCGCGGGGCTTCTGGTTTTGGGGCAGAAGAAGAGGTCCACAACGTGGCGTCTTCTAATGATGTGGGC AGGCAACAGAGTTACTGGTGGGGTGGTGGAGTATTGCATCCAGAATGCTCATTGCATGGCAATTGCTGTGAGAAGAAAAA GCAAGAAAATTGGAGGCTACATGATTACTACGAAGCGTCACAAAGATTTCTGGCTCTTAGCTTAA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0291300.5) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGKRGTRLPGFCLNRIRPHARVRSPPIQAKLDTNASETDKKTENSCSACEEKSDDGVKPGSMIGRKIMIVVDSSLEAKGA VQWALTHTVQNQDIIILLHVMKYGSLNVAATEEGSSKEIDPRAYELASSFKNMCNVKMPEVQIEIAVTEGKEKGPTIVEE AKKHGAGLLVLGQKKRSTTWRLLMMWAGNRVTGGVVEYCIQNAHCMAIAVRRKSKKIGGYMITTKRHKDFWLLA
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR47000
1 234 234 6.5E-132 –
MobiDBLite
mobidb-lite
23 57 35 - –
MobiDBLite
mobidb-lite
34 57 24 - –
Gene3D
G3DSA:3.40.50.620
63 214 152 4.8E-20
IPR014729
SUPERFAMILY
SSF52402
65 214 150 4.44E-16 –
Pfam
PF00582
65 211 147 2.2E-21
IPR006016
CDD
cd00293
66 210 145 1.07434E-20 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0291300.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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