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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0292000 |
| Transcript ID | LotjaGi2g1v0292000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | CRABS CLAW; TAIR: AT1G69180.1 Plant-specific transcription factor YABBY family protein; Swiss-Prot: sp|Q8L925|CRC_ARATH Protein CRABS CLAW; TrEMBL-Plants: tr|A0A0S3T272|A0A0S3T272_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0292000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:76620469..76622810) extracted from Lotus japonicus Gifu genome v1.2.
TGCAAATAAAGCATGCAAAATAACGCTGCAGCTTGTACTATAAACGCCACTAGCTCTTCTTTTTGACGTTACCCCTTACT TTCTATCTTCCTATTCCTATATAATATATCACAGTCATGCACTCACTCACTCATATCTTCCATTGCTTAAACCCTACAAG TTACAACTCTCTCTCCCTCTCTCTTAACTTTCTTACCCACCTACCTTCCAAGTATGAACCACGAGGCTGAGAAAGTCACC ATGGACCTGGCTCCCCCATCTGAACACCTCTGCTACGTTCGTTGCAACTTCTGTAACACTGTTCTCGCTGTAAGTAGTTA TCACTTCTCCTTTAATCACTAGATCGATAGCAGAAACTATCAAACACCAACTATCATTTCAACTAGCTAGTTTCCTTGTG ATTCAGTTTGTTCTTTCTATATTTATATATATGTTACCATCCAAATATTTATATATTATTGAACTTGTACAATACAAATA CATCTACTAAAAAAAAATAGTTAGCAAATTGTTACTAATAACATGTTTGGAAACACCTGGTGTTTGAAACCAAAATCAAC TCCAGAGGAACTTTTGTGAGTCACTTCTAAACTTGAAAGTTGATTCTGAATGGAAGAGAGAGTTTCATCCAAACATGTCA TAAAACCTGAAGAGGCTAACTTTAGGACAATGTTGTGTAGACATCCACATAACAGACGTCCAATAAATATCTAATAAGAA AGGAAGAACAAGAGAGAAGTATGACCAGGTGTCTATAATCTATTGGATGTTATTGCAATGTTTGGATGTCTGAGTATCAT TACTCCATACTATATAAGATACCCAGGGTGATGTTGTTGGTGTTATTTTTGGTGTGCAGGTTGGCATCCCATGCAAGAGG CTGCTGGACACTGTGACAGTGAAGTGTGGTCACTGCAGCAACCTCTCTTTTCTGAGCACCAGACCCCCAAATTCTCAAAA TCAAACCATTGATCACACCCTCAGTCTCCAGGTTGTTTGTGTCAAAATCTAATGCTTCTTCTTTAGTATTCTCTTTCAGT TTCTTTGCTGGACTCATATGTACATCAGTACATGTCTTTCATCAAAAGTAATTAGAGTTAGCATCTTTTTTTTTTTAAGT AGGGGTTTTACGGTGATGCCAAAAAGGGGCAAGCATCATCTTCATCTTCTTCACCAACTACTTCTAGCGAGTCAGTGTCT CCTAAAGCAGCACCATTTGTTGTCAAACGTAACAACCCTTTTCAGAACTCTCTATAAATGATTTTCTTTCTCAGTTCCCA ACAACATTCATGTGTGTCCTTTTTTGTAATTTGATTTTTCTTTTTGCAGCACCTGAGAAGAAGCACCGTCTCCCATCTGC TTACAATCGTTTCATGAAGTGAGTTCAGATTTCAGAAGAGATGTGTATTTTTTGTCTTTGTTTTGTTTACCACTACAAAC TATTACATTCTCTTATTCTATTTACTTTTTCTTAGTACTATAACATGTGCACCATATATGGTTGATTTGATGTGATTGTC AGAGAGGAGATACAGCGCATCAAAGCAGCAAATCCTCAGATCCCACATCGAGAAGCTTTCAGTGCTGCAGCAAAAAATGT AAATCTTTTCACCCCCCCCCCCATTTTTATATATATGTAGGTTTTTAGGGTTAGCACTTAGCACTGCACTTGCTTTTGGT AAGTGTTTATTACACTTTCTTCTTGAAACTCACAAGATTATGGTCCTAACTTTGTGCTGCATAACTGAATTACATGCTTT TGGTAAGTGTTTATTACACTTTCTTCTTGAAGCTCACAAGATTATGGTCCTAACTTTGTGCTGCATAACTGAATTACAGT GGGCTAGGTTCATTCCAAATTCCCCAACCACTTCAGTTTCTGCAAGTAAAAATCATGTTGTAAGAATAGTACTTATCATT ATTATATATCCATTATGCATTCTCCAAATATTAACTATTTGTTAATTAACAGAATTTCATTAACTTATGTGTGTAGGAAT GAAGGAGCTAGCAATGGCATGAATGATGATGATATGGAGAGGACTGGAGCAAGTTAATTGGTGTCCTTTTAGTTTTCAAT AAATTACATATGTTTTTGTAATGCCATCTTTTAATTTCCTTCAATGTGGAGATTGAATTTATGCTAGCTTGCATGTAGGA GATCTGACACCACTTTGATATCTAGGGGGAAGACTTGATCTATTAATATGCTATTATTAATGTTGTTTTGTATGAAAAGA TGTTTGGATGTGGCTGATAATTTATCTAATGGGCAATTAAAACTATTCATGTGAACCTAAGTATAATGCCACCATCCCGT TTTAAAAATTGCTCTTACTGCG
CDS sequence (LotjaGi2g1v0292000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACCACGAGGCTGAGAAAGTCACCATGGACCTGGCTCCCCCATCTGAACACCTCTGCTACGTTCGTTGCAACTTCTG TAACACTGTTCTCGCTGTTGGCATCCCATGCAAGAGGCTGCTGGACACTGTGACAGTGAAGTGTGGTCACTGCAGCAACC TCTCTTTTCTGAGCACCAGACCCCCAAATTCTCAAAATCAAACCATTGATCACACCCTCAGTCTCCAGGGGTTTTACGGT GATGCCAAAAAGGGGCAAGCATCATCTTCATCTTCTTCACCAACTACTTCTAGCGAGTCAGTGTCTCCTAAAGCAGCACC ATTTGTTGTCAAACCACCTGAGAAGAAGCACCGTCTCCCATCTGCTTACAATCGTTTCATGAAAGAGGAGATACAGCGCA TCAAAGCAGCAAATCCTCAGATCCCACATCGAGAAGCTTTCAGTGCTGCAGCAAAAAATTGGGCTAGGTTCATTCCAAAT TCCCCAACCACTTCAGTTTCTGCAAGTAAAAATCATGTTGAATGA
Protein sequence (LotjaGi2g1v0292000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNHEAEKVTMDLAPPSEHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLSTRPPNSQNQTIDHTLSLQGFYG DAKKGQASSSSSSPTTSSESVSPKAAPFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPQIPHREAFSAAAKNWARFIPN SPTTSVSASKNHVE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 8 | 172 | 165 | 1.2E-83 | – | |
| PANTHER | 8 | 172 | 165 | 1.2E-83 | ||
| Pfam | 15 | 157 | 143 | 2.1E-56 | ||
| MobiDBLite | 81 | 116 | 36 | - | – | |
| MobiDBLite | 83 | 103 | 21 | - | – | |
| SUPERFAMILY | 102 | 155 | 54 | 1.31E-8 | ||
| Gene3D | 114 | 170 | 57 | 1.3E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Multicellular organism development | The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). |
Expression pattern of LotjaGi2g1v0292000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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