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LotjaGi2g1v0292100.1

Overview

Field Value
Gene ID LotjaGi2g1v0292100
Transcript ID LotjaGi2g1v0292100.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Carboxyl methyltransferase; TAIR: AT4G36470.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp|Q9SPV4|SAMT_CLABR Salicylate carboxymethyltransferase; TrEMBL-Plants: tr|V7C5L4|V7C5L4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0292100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:76638544..76641856) extracted from Lotus japonicus Gifu genome v1.2.

GTGACATTCTATAACTAGATTAATTCTGAACCCCATGATTAGTAATGTGCTATAATTTTTTGGAAGACCAAAGCCCAAAG GTAAAGCATAAAAAGAAGTGTAAATGGCCACATCATTGAAATCTCCCTTTAAAAAGATGACACAACTTCACTAACAAGCT AGAAGGTTCTTGTTCAAACTTCTAACCAAGGAAATGGATGTAGAGAATGTCTTCCACATGACTGGAGGAGTTGGCAAAAC TAGCTATGCAAAGAATTCCTCATTACAGGTTCAATTCTTTCTCTCAACCATAGTTTCCTTGTTTTGGTTTAAAATTGAAA TTTTACTTCCTTCTAATCATGTTTATCTCTTTATTCTGATTTTGACAGAAGAAGGAATCTGATAAGGTGAAACACATAAT CATACAAACAGTTGAGGAGCTTTACCTTGCAACCACTCCCAAGAGCATAGGCATTGCTGATTTGGGTTGCTCCTCTGGAC CCAATACTCTTTCAATCATCAAAGACATCTTTCAAACCATCCAAAACACAAGTCAAAATATCATGCATCACTCTGAAGAG CTTCGTGTATACCTCAATGATCTTCCAACCAATGACTTTAATTCAATTTTCAAGGCCTTGCCTGAGTTTCAGAGGTTGCT TAGGCAGGACAGGAAAGATAATGGGGTTCCTTCCATTTTCATGGGAGGTTACCCTGGTTCATTTTATGGAAGACTATTCC CAAACAATTACTTGCACTTTGTCCACTCCTCCTACAGTTTACACTGGCTTTCAAAGGTAATGTTACTACATTTCTTGTTT TTTCACACAAATGTCACTTGCACACTCCATTTTCTTCTGCACTATCCCTGCTTCTAGACTCCGTTTGGAAGAACTTATTT GAGCTTATCTCATAGTATAAGTGTTTATGTTAGTGTTTGAGATAGTAACCTGTTTAGAAGAGCTTATGTGAACTTATCTT ATAGCATAAACTCTATGCAAATGTTTGAGAGAGCTTATGTAAATAGCTTCATGACTATCTATAAGAAGTTCTCAACATAT TTTAATAAGATATTCACATTAGTTTATAAATAAGAGCTTAAGCTTACATGTAGCATATTTTCAGCTTATTTCATAAGTTT CTCAAATAAGCTTATGAATAAGCGCTTATGTGATAAGGCTTAATTAAGTTGTTTCCCCAAACACGCACAAGTGTGAATAG TTTATTACCTATCTATACATTGTTTTGAATTTATTTTCATAAGTTGTTCAAATTAGACTGAATAAGAGCTTAACATGTAA CTTAATTTCAGCTTATTTCAATAATCTTCTCAAATTAGATTATGTATAAGCACTTATAGTCATAAACGCTTAATTAAGTT GTTTAACCAAATGCACCCTTAACTGTAGATATTGGTGGTTTATTTCATGCAGGTTCCTCCAGCACTTTATGATGAGGAGA AAAGGCCTTTGAACAAGGGATGTGTTTACATTTGTGAATCAAGCCCTGAAGTGGTACCCCAAGCATACTATGAGCAATTT CAGGAAGATTTTTCCTTGTTCCTCCGGTCGAGGTCAGAGGAATTAGTTGTGGGTGGAAGGATGGTGCTGATTTTTCTTGG AAGAAGAGGGCCAGAACATGTTGACAGAGGCAACTCTTTCTTCTGGGAGATTCTCACCCGGTCATTTGCTATTTTAGTCT CACAGGTACATTGCTAGAGGACATGTTATTGTTGTTACTTCTGTTTTTGTTATAAATAATAACAAGTTGGAATTCAGCAC TGAAAGGTAAATTGAAGTTCAAAATAAGTATCCATTATAGAAACAACTACAGAATCTATAGGTGAAGAATAATCTGTTAT GTGGATGTTTTATCATGTTACCATAGTGTTTAAGTGGCTTTTTGCATGACCTTTATTAATTGGTTGCTGTTTTTCATAAT AATTGATAGTCTATCTTAAAAGATTTGGGTTGACATGAAACACTATCAACAAAATGATTGTGCTTGGATTTTAATTGGTG ATCTTTGATGATTCATAGCATGTTTGTTTAACTGTGTGAATCCTGTTTAGATTCCTTTGGTAGGCAAATCCCACTTTTTG ATGCACAAAAAACATCAGAGCAACATCATTTGAGTTTCTTTAGGTTCTGTTAATAGTAAAGTATAAACAAACACATCCTA AATTGTCACTTGCTAGTTGCTAGGATTGCTGTTACAAGCTCTCATGTCTCAAATAAGAAACTATACATCTTCCATCTCCT AAACTTAATTTCATGTAAGAAAAAGTAAAATAGGACTACATTTAGATATATGCAACCACTAACGCACATTAACAAATACT TCAAGAAATAAAGTGAACATTACTTTATTTATAAATTGAGATGAAAGTTTCTTCGCATTACACTCAACATATATCCACAC ACCATAAACAATAGATCATAGAGCAAGTAAAGGCACTAGTCAATCGTGTATGAATCTTTCTACAACTGATTGTAAAGTCA TTATCAATTATGTGGAATAACTTCTTTGAGTAGTTTCCAGATTACAAACATTCTTGATTCTGAGGATATAAAAGCAGATC CAAACATGTTATATTGTTTTGTTTTCGTAACTTATAATCTTCTTTTTCTATTATGTAGGGAGAAATAGAGCAGGAGAAGC TTGATTCCTACGATGTGCATTTCTATGCACCATCAAGGGAAGAAATAGAAGAAGAGGTGAGGAAAGAAAGGTCACTGAAG CAGGAGAGACTAGAGATGTTTGAGATGGACAAGAGTGAGCAAGGGACAGAGGTTGCAAAGGCTGTGAGGGCCATCCAAGA ATCAATGATCTCCAACCACTTTGGAGAAAGGATCTTAGACAGTTTGTTTGAGAACTATGCTAGACTGGTGGATGAAGAAA TGGCTAAGGATATAAAACCCGTTACTTTTGTGCTAGTTCTTAGTAAAATTTGAATGTATAGATTAATATATGTATCACCA CAAATTCCCAGAGGCTATTTTAGTTCGCAGTAAGTGTTTAAATTCCAATCACTTAATTGGTTAAGAATCTGAAAACTGTA ACATGCTGTATGAACATCAAATTAGTCAAATGGAATGGCATTTCCTTGAAATATTTGAAGCATATACCATTTCTTGAATA CAAGTTTTTCTGTTTTTCATTAGGCTTTCGAGTCATTTGACATAAGAGCACATTATCGCCACTAGGGGTGAACATGGGCC GGGTAAATCCAATGAACCCGCTCAACCCAATCCGATCCAATAGAAAAAATGCGGATTGGATCGGGCAATCGGGTAAGTCG GATGGATTTTACTACAACCCAACAAAGTTCGGA
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0292100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGATGTAGAGAATGTCTTCCACATGACTGGAGGAGTTGGCAAAACTAGCTATGCAAAGAATTCCTCATTACAGAAGAA GGAATCTGATAAGGTGAAACACATAATCATACAAACAGTTGAGGAGCTTTACCTTGCAACCACTCCCAAGAGCATAGGCA TTGCTGATTTGGGTTGCTCCTCTGGACCCAATACTCTTTCAATCATCAAAGACATCTTTCAAACCATCCAAAACACAAGT CAAAATATCATGCATCACTCTGAAGAGCTTCGTGTATACCTCAATGATCTTCCAACCAATGACTTTAATTCAATTTTCAA GGCCTTGCCTGAGTTTCAGAGGTTGCTTAGGCAGGACAGGAAAGATAATGGGGTTCCTTCCATTTTCATGGGAGGTTACC CTGGTTCATTTTATGGAAGACTATTCCCAAACAATTACTTGCACTTTGTCCACTCCTCCTACAGTTTACACTGGCTTTCA AAGGTTCCTCCAGCACTTTATGATGAGGAGAAAAGGCCTTTGAACAAGGGATGTGTTTACATTTGTGAATCAAGCCCTGA AGTGGTACCCCAAGCATACTATGAGCAATTTCAGGAAGATTTTTCCTTGTTCCTCCGGTCGAGGTCAGAGGAATTAGTTG TGGGTGGAAGGATGGTGCTGATTTTTCTTGGAAGAAGAGGGCCAGAACATGTTGACAGAGGCAACTCTTTCTTCTGGGAG ATTCTCACCCGGTCATTTGCTATTTTAGTCTCACAGGGAGAAATAGAGCAGGAGAAGCTTGATTCCTACGATGTGCATTT CTATGCACCATCAAGGGAAGAAATAGAAGAAGAGGTGAGGAAAGAAAGGTCACTGAAGCAGGAGAGACTAGAGATGTTTG AGATGGACAAGAGTGAGCAAGGGACAGAGGTTGCAAAGGCTGTGAGGGCCATCCAAGAATCAATGATCTCCAACCACTTT GGAGAAAGGATCTTAGACAGTTTGTTTGAGAACTATGCTAGACTGGTGGATGAAGAAATGGCTAAGGATATAAAACCCGT TACTTTTGTGCTAGTTCTTAGTAAAATTTGA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0292100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDVENVFHMTGGVGKTSYAKNSSLQKKESDKVKHIIIQTVEELYLATTPKSIGIADLGCSSGPNTLSIIKDIFQTIQNTS QNIMHHSEELRVYLNDLPTNDFNSIFKALPEFQRLLRQDRKDNGVPSIFMGGYPGSFYGRLFPNNYLHFVHSSYSLHWLS KVPPALYDEEKRPLNKGCVYICESSPEVVPQAYYEQFQEDFSLFLRSRSEELVVGGRMVLIFLGRRGPEHVDRGNSFFWE ILTRSFAILVSQGEIEQEKLDSYDVHFYAPSREEIEEEVRKERSLKQERLEMFEMDKSEQGTEVAKAVRAIQESMISNHF GERILDSLFENYARLVDEEMAKDIKPVTFVLVLSKI
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SUPERFAMILY
SSF53335
1 351 351 2.93E-109
IPR029063
PANTHER
PTHR31009:SF6
2 353 352 8.1E-173 –
PANTHER
PTHR31009
2 353 352 8.1E-173
IPR005299
Gene3D
G3DSA:1.10.1200.270
6 341 336 1.4E-118
IPR042086
Gene3D
G3DSA:3.40.50.150
21 296 276 1.4E-118 –
Pfam
PF03492
39 355 317 1.7E-114
IPR005299

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0008168
Molecular function Methyltransferase activity Catalysis of the transfer of a methyl group to an acceptor molecule.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0292100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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