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LotjaGi2g1v0292800.1

Overview

Field	Value
Gene ID	LotjaGi2g1v0292800
Transcript ID	LotjaGi2g1v0292800.1
Lotus japonicus genome version	Gifu v1.2
Description	RNA binding; TAIR: AT1G13690.1 ATPase E1; Swiss-Prot: sp\|A4FV72\|PPIE_BOVIN Peptidyl-prolyl cis-trans isomerase E; TrEMBL-Plants: tr\|A0A1J7GP09\|A0A1J7GP09_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0292800
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr2:76726785..76728343) extracted from Lotus japonicus Gifu genome v1.2.

CGCACCGCTCAGAGATCGAACCATGGACTAGATGTTTAAGGAGCTTAACTATATATTTGTGCAGTTGTGCTACACCTTGT TGATCACTATTAGTAATTGTTTTCATACATTTAAAAGGATTTTGGGCTAAAGAACATGTTTCCGTAAAGCCCAAAACCTT CTGAGGCCCAACAAGGAAAAGCCCATTAGCCCACACACGAAACAAACAAAAAAAGATGAAGGTTAACGTCAATGGTGGAT TCAGATTCAGCGAACCCTAACACCGGTTGAAGAAGAAGATGGCGATGATGGAAGGGGTGCAGAAGAACACTCTCTACGTC GGAGGGTTAGCGGAGGAGGTCAACGAGTCAATCCTCCACGCCGCCTTCATCCCCTTCGGCGACATCAAAGACGTGAAGAC GCCGCTCGACCAGGCCACACAGAAGCACCGCTCGTTCGGCTTCGTCACGTTCCTCGAGAGAGAAGACGCCGCCGCCGCCA TGGACAACATGGACGCCGCCGAGCTCTACGGCCGCGTCCTCACCGTGAATTACGCCCTCCCGGAGAAAATCAAGGGCGGT GAACACGGTTGGGCTGCGCAGCCAAGTAAGTAACTGCTTCCTAACTACCATTGTTGATTCTCTAACTGGTTTTTGTTTTG ATTTGACCTAGTTTTTGGGGATTGGGATTTTTTTTTGTTCAGTTTGGGCGGATGCGGATACGTGGTTTGAGCGGCAGCAG CAGGAGGAGGAGATGCGGCGGTTGGAAGCTGAGAGTCGAGCGGCGAATCAGGCTGCTGAGGATTTGCGGAGGAAGCAAGC TGTTGAGGATAGAGAAGGGGAGAAAGATGATGCAATGGAGGTTGATCCTATGGCAAAGGCTGAAGCTGAGGTTCTTCAAC AGAATCAGTAGCTTGTGAGATCAATCTGATCAGAGAAATAGAAATTGCTGTAGATGATTCTGATACAAGATGATAATTGC TAGGGGCTTGCTTCCCAGTGAAATTGTGTGTTCTTCCCTGTTTTTCTGCCTTGCTTGTATTGTGAAGATTCTAGCATGGG AACTGCACTACTATAGTTGTGTCTTGAAAGTTGAAACAGATAGCTTCTGATATAGTTCTAGAATTTAGGATGGTTGATTT CAAACATGTTTTGGATGATTGTGAAATCAAGATGAAGAATGAAATTAAGTGTATGTTTGGTTTCATGTTTGTTGGAGTTA GATTATAGCTCTTAAATCAATTCTAGAATGAAGCTACAAGCACCTTAAGATCTTTCACAATCATTTGTCCATTTATAGAA GCTACATCAGTATATTTAAAAAAAAAGCAGTTCTTCTCCTACTGCAGAAACCTACTGAGTTTCAATTCATACAGACATAC ACCAACTTCTACAGCCCTTTGGCTATTCACTCTTTGGAAAATCTTCCAAAATTGAGTGTGTATATTATAATCTACCGAAA GTAGCCAGGATCGAACTCTCCATGAGATTCCTTGTTGCATTACTTATAACTTCCTTGTTCGTAAACAAACCTCTTCCGTA GCCGATTCTCGGCTTCCACGAGACAAAAGCACACATGCT

Download Genomic Sequence

CDS sequence (LotjaGi2g1v0292800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGATGATGGAAGGGGTGCAGAAGAACACTCTCTACGTCGGAGGGTTAGCGGAGGAGGTCAACGAGTCAATCCTCCA CGCCGCCTTCATCCCCTTCGGCGACATCAAAGACGTGAAGACGCCGCTCGACCAGGCCACACAGAAGCACCGCTCGTTCG GCTTCGTCACGTTCCTCGAGAGAGAAGACGCCGCCGCCGCCATGGACAACATGGACGCCGCCGAGCTCTACGGCCGCGTC CTCACCGTGAATTACGCCCTCCCGGAGAAAATCAAGGGCGGTGAACACGGTTGGGCTGCGCAGCCAATTTGGGCGGATGC GGATACGTGGTTTGAGCGGCAGCAGCAGGAGGAGGAGATGCGGCGGTTGGAAGCTGAGAGTCGAGCGGCGAATCAGGCTG CTGAGGATTTGCGGAGGAAGCAAGCTGTTGAGGATAGAGAAGGGGAGAAAGATGATGCAATGGAGGTTGATCCTATGGCA AAGGCTGAAGCTGAGGTTCTTCAACAGAATCAGTAG

Download CDS Sequence

Protein sequence (LotjaGi2g1v0292800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAMMEGVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEREDAAAAMDNMDAAELYGRV LTVNYALPEKIKGGEHGWAAQPIWADADTWFERQQQEEEMRRLEAESRAANQAAEDLRRKQAVEDREGEKDDAMEVDPMA KAEAEVLQQNQ

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
Gene3D	G3DSA:3.30.70.330 View details on G3DSA:3.30.70.330 Search for proteins/transripts with this domain View external data on G3DSA:3.30.70.330	2	100	99	1.8E-24	IPR012677 Show description in modal box View details on IPR012677 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF54928 View details on SSF54928 Search for proteins/transripts with this domain View external data on SSF54928	8	94	87	2.44E-25	IPR035979 Show description in modal box View details on IPR035979 Search for proteins/transripts with this domain View on EBI InterPro Service
PANTHER	PTHR15241:SF99 View details on PTHR15241:SF99 Search for proteins/transripts with this domain View external data on PTHR15241:SF99	10	121	112	4.0E-25	–
PANTHER	PTHR15241 View details on PTHR15241 Search for proteins/transripts with this domain View external data on PTHR15241	10	121	112	4.0E-25	–
ProSiteProfiles	PS50102 View details on PS50102 Search for proteins/transripts with this domain View external data on PS50102	10	88	79	17.455	IPR000504 Show description in modal box View details on IPR000504 Search for proteins/transripts with this domain View on EBI InterPro Service
SMART	SM00360 View details on SM00360 Search for proteins/transripts with this domain View external data on SM00360	11	84	74	3.1E-22	IPR000504 Show description in modal box View details on IPR000504 Search for proteins/transripts with this domain View on EBI InterPro Service
CDD	cd12347 View details on cd12347 Search for proteins/transripts with this domain View external data on cd12347	12	84	73	1.5011E-32	IPR034168 Show description in modal box View details on IPR034168 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF00076 View details on PF00076 Search for proteins/transripts with this domain View external data on PF00076	12	81	70	5.7E-18	IPR000504 Show description in modal box View details on IPR000504 Search for proteins/transripts with this domain View on EBI InterPro Service
Coils	Coil View details on Coil Search for proteins/transripts with this domain	113	140	28	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	117	158	42	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003676 View details of GO:0003676 AmiGO InterPro QuickGO	Molecular function	Nucleic acid binding	Interacting selectively and non-covalently with any nucleic acid.	Subterm of View details of GO:0097159 View details of GO:1901363
GO:0003723 View details of GO:0003723 AmiGO InterPro QuickGO	Molecular function	RNA binding	Interacting selectively and non-covalently with an RNA molecule or a portion thereof.	Subterm of View details of GO:0003676

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0292800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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