Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0296700 |
| Transcript ID | LotjaGi2g1v0296700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SNAP25 homologous protein SNAP33; TAIR: AT1G13890.1 soluble N-ethylmaleimide-sensitive factor adaptor protein 30; Swiss-Prot: sp|Q9LMG8|SNP30_ARATH Putative SNAP25 homologous protein SNAP30; TrEMBL-Plants: tr|I1J5Y3|I1J5Y3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0296700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:77183156..77185986) extracted from Lotus japonicus Gifu genome v1.2.
GTTGAAACAGAGAAGAGGTCTCTGTTTTTTCGCAGGGCCTTACATTGCATCATTCATTTCTTATTTTTCAGCGAAACTCA GACAATTCCCATTCTCTCGTATTTTGTTCAATCAATTTTCCTATTGCTTTCTCTTTGCTTCTTCCCCTCTTGTACGCAAA CCCATCATCACATTTGGGTTTGTGTACTACATTCATATCCTTCTTGTCCCCATTTTTCAGGCAAGGTACACCATTCTAGT ACTTTTTCATCTTCTTCTTGCACATTCTTCCTTTGATTTCATTGTCTTACCTAACCCTTTGAGTTGATTACATTGTACTT TAAGGATTTGATGATTGATAGTTGTTGACTTTATTTTTTCTATGATTTTGGATCACGGGTTCCTTCAATTGCTCTGTTTT TACTCTGTCTGACTATTTCTAGAAACTGAGCATTTTGTTACAATTGCTCTGTTCTCACTCTGCCTAACAAGTTCTTGAAA CTAGAGCATGTTGTTTCAAAAAAAGTGAACAATTTAATCAATGGAAATTCTATAACGGTCCACTCATGAGCCATGTTTTT ACAACTAACACACGTTATTTACAATATACTTCTTATGTGTTAAAATTAATTTGCAGAGAAGTCGACAAAGTTTTTAATCA ATAATGTTCATTTTCTTTCAGCCATCTTCAGTACAATCTAAAACTCAAAATGTTTGGGTTTAGAAAAGCACCACCAAAGC CTGCAACTACCGGCGCCGAACCGGAAAAGAACACAACCATGACACAAGATAGGCGAACCACTTCAGCGCCTGTTCTCCCC ATGCCAAAGTCTAAAGGGAACTATTTTGATGATGATGATGACGATGATTGGGGGAGAAAGCCTTCCACCACTAAATCCTC CGGGGGCCTAGAGAGCAAGAGTGTTCAGGAGCTTGAGGACTATGCAGTGAACAAGGCTGAGGACACGACGAGGAGCGTTA ACAATTGCCTGAGGATTGCTGAGGACATTAGAGGGGATGCAGCAAGGACCCTTGACATGTTGCACCAGCAGGGTGACCAG ATAACAAGGACTCATAATATGGTTGTTGATACTGAGAAGGATTTGAGTCGGGTATGTATCTATTGGTTTCTTTTCTACCT TGGAATTTTTGTCAAAGTGTTGTTGATTTTGAATGATGTTATGAAATCTAGGGAAAGGATGTTGATTTGTGGTAGGTAGC ATTTTGGATTCATAGAAAATGATATAAAGAATGGGGTGGCATGATAATATCAATATGAAATGAAACTAGTAAATTTCATT CCCTCATTCTTTCCATATGCAACTCATTTTATTCAATTTCACCCAATACCTCATTCTTTCCTTTCCTTCCAATTTGGGGT ATGGCATGAAACTAGTATTTTTTTTTTCTATCCTATTCATCCAAGCAACCAGATGATAACTTATTCAATTCCCTATTATT GTATTTGATTTCACTCTACTAGTTATATATATAAACATAGCTTGAACTCATAGTGTCCTTTATCATTTTCAACTTATAAT GCTTGCTAAATGTTCATGTGACAACTATCTGGATGAGAACCTCTAAAGAAAGAATATAAGCATTTACAAAATATACAAAT GCAAATGAATGCAAAGATTATAACATTTGTGTTAATTGCTCATTTTATTGGCCTTATTTCTACTGGTATTTTTAATTCCT AAAATTTTCATTCTGATGATCAGGGTGAAAAACTCCTAAACAATCTTGGGGGCATGTTCTCAAAACCCTGGAAGCCAAAG AAGACCCGGGAAATCCAAGGCCCTGTAATTACCTCAGGTTTTCTTCTCACCTTTATGCTTAACATTTTGGTTATTTTCCA TAACAAGGAAACTATACTATTTCAAAATTTCAACTGAATTTGGTGTGTGAACAGATAATCCATCCAAAAAGAATGTGAAG AACAAGGAAGACAGGGAAAAATTGGGCTTAGCTCCTTTGCCTAAGGGACACTCTGCTCCTTCCACACCTGTTCCTGAATC AGCCAATGCCTATCAGAAAATTGATGTATGTGTTTTTTGTTATGTCCATAAGTTTTTTTTTGTTATCTTTGAAGAACCAT TTCCATTGCATTATCTAATCTATTGATGTTACTAAAACAGTATGAAAAAGCTAAACAAGACGATGGACTCTCAGATTTGA GTAATATCTTAGGCGATTTGAAGGGTATGGCAATTGATATGGGATCAGAACTTGACAAGTAAGCATTTGTTAATATACTT TAGTATTAAAGTAAATTTGTGTTACACTGATAATCTTTTGTGAATGTTACATATTTAATTTCTTTCTCTATAATTGTGTT ATATGAGAGATCTATTTGGTTCTCTAATGTTCTTCATACTATAATTGCAGGCAAAATAAAGCTCTTGATCATCTTAGTGA CGATGTAGATGAGCTGAACTCTCGAGTTAAAGGTGCAAACCAGCGTGCACGCAAATTAGTAGGGAAGTGATAGATAATAG GCTTCAAATCCTTCTATAATATTTGATCAAACATTACATTGATTTAGCTCAATGACATAGTGTGACCCATATAGCCATAT TTTCTATTCTTGTTATGTTGTTCTCACCCTTTTTCAGTCGAGGTTATGATGTTTTCACTTATTGATCGTGATTCATCATT TGTTTGTAAATTTTCAATATAACCTTTTTTGCTGAAAGCATTTGACAAATTATATAGATTTCGTTCCTGTATTCTGATTT TGCATTTCCGTTTTCTTTTCTTAGCTATTCTTTAGAACAAGAGCTGAAAAGCAAAGTGTTTTGAACAAATATAACAACTT CCCCCTATATCTTATGTAATTTGTATTCTGT
CDS sequence (LotjaGi2g1v0296700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTGGGTTTAGAAAAGCACCACCAAAGCCTGCAACTACCGGCGCCGAACCGGAAAAGAACACAACCATGACACAAGA TAGGCGAACCACTTCAGCGCCTGTTCTCCCCATGCCAAAGTCTAAAGGGAACTATTTTGATGATGATGATGACGATGATT GGGGGAGAAAGCCTTCCACCACTAAATCCTCCGGGGGCCTAGAGAGCAAGAGTGTTCAGGAGCTTGAGGACTATGCAGTG AACAAGGCTGAGGACACGACGAGGAGCGTTAACAATTGCCTGAGGATTGCTGAGGACATTAGAGGGGATGCAGCAAGGAC CCTTGACATGTTGCACCAGCAGGGTGACCAGATAACAAGGACTCATAATATGGTTGTTGATACTGAGAAGGATTTGAGTC GGGGTGAAAAACTCCTAAACAATCTTGGGGGCATGTTCTCAAAACCCTGGAAGCCAAAGAAGACCCGGGAAATCCAAGGC CCTGTAATTACCTCAGATAATCCATCCAAAAAGAATGTGAAGAACAAGGAAGACAGGGAAAAATTGGGCTTAGCTCCTTT GCCTAAGGGACACTCTGCTCCTTCCACACCTGTTCCTGAATCAGCCAATGCCTATCAGAAAATTGATTATGAAAAAGCTA AACAAGACGATGGACTCTCAGATTTGAGTAATATCTTAGGCGATTTGAAGGGTATGGCAATTGATATGGGATCAGAACTT GACAAGCAAAATAAAGCTCTTGATCATCTTAGTGACGATGTAGATGAGCTGAACTCTCGAGTTAAAGGTGCAAACCAGCG TGCACGCAAATTAGTAGGGAAGTGA
Protein sequence (LotjaGi2g1v0296700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFGFRKAPPKPATTGAEPEKNTTMTQDRRTTSAPVLPMPKSKGNYFDDDDDDDWGRKPSTTKSSGGLESKSVQELEDYAV NKAEDTTRSVNNCLRIAEDIRGDAARTLDMLHQQGDQITRTHNMVVDTEKDLSRGEKLLNNLGGMFSKPWKPKKTREIQG PVITSDNPSKKNVKNKEDREKLGLAPLPKGHSAPSTPVPESANAYQKIDYEKAKQDDGLSDLSNILGDLKGMAIDMGSEL DKQNKALDHLSDDVDELNSRVKGANQRARKLVGK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 70 | 70 | - | – | |
| PANTHER | 3 | 274 | 272 | 1.9E-133 | – | |
| PANTHER | 3 | 274 | 272 | 1.9E-133 | – | |
| MobiDBLite | 16 | 32 | 17 | - | – | |
| MobiDBLite | 43 | 58 | 16 | - | – | |
| Gene3D | 66 | 144 | 79 | 1.7E-19 | – | |
| SUPERFAMILY | 70 | 141 | 72 | 8.97E-17 | – | |
| SMART | 75 | 142 | 68 | 2.0E-4 | ||
| CDD | 77 | 141 | 65 | 1.59302E-20 | – | |
| MobiDBLite | 143 | 203 | 61 | - | – | |
| MobiDBLite | 170 | 185 | 16 | - | – | |
| SMART | 204 | 271 | 68 | 7.4E-12 | ||
| SUPERFAMILY | 204 | 271 | 68 | 5.44E-17 | – | |
| Gene3D | 206 | 273 | 68 | 1.3E-23 | – | |
| ProSiteProfiles | 209 | 271 | 63 | 17.714 | ||
| CDD | 212 | 270 | 59 | 1.26916E-17 | – | |
| Coils | 240 | 274 | 35 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0296700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…