Transcript — View — Lotus Base

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LotjaGi2g1v0297100.1

Overview

Field	Value
Gene ID	LotjaGi2g1v0297100
Transcript ID	LotjaGi2g1v0297100.1
Lotus japonicus genome version	Gifu v1.2
Description	Remorin family protein; TAIR: AT1G13920.1 Remorin family protein; Swiss-Prot: sp\|Q9M2D8\|Y3126_ARATH Uncharacterized protein At3g61260; TrEMBL-Plants: tr\|G7JXW7\|G7JXW7_MEDTR Carboxy-terminal region remorin; Found in the gene: LotjaGi2g1v0297100
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr2:77204078..77206532) extracted from Lotus japonicus Gifu genome v1.2.

CCATGACTAACCAAAAGAAAAATTTCTTTCCAAGGTTTCTTAGCTTTCAAATAAGCACATGTTAGTAGCCAAAGGAATGT TGACAAAGCATATTACTCATAGAAGGGAAACCTGAGAGCAGAACTTGTCCAGCAGAATGGAGAATTTGTTAAATCAAATG AGGTTAGTCGTTCTGGCTTTTCACCCTAAACTTCTTGGAAGATAAACATATGTTGCTATTTCATGCCAGCCATAGATTTA GCTGAGCTGAAAAGAAACAGACTTTCCTTTTGTACCATATTTACCATGTAACATGGCAACAAGGTTACAAAAGCTATGTT ATCATGGTTAATTAGTTTGCAATAAATTGAATATCAGAGAATCCATCAGGTGTCTGATCAACATAAAGTACTTTTTTGTT CAACAAATATATTTTTACAGATATTGTATAAAACCAGAACTAAAGGCGCTCATAATTATCATCCTTCTACATGAACACTT TTGTTAGGGTGCAATTTTCTAGTGTGGAGCAGGACAAAGCTGATGGCACTGGGGATCAGAAAATACCAATACAGAAAACT CAATCTTTCAAAGGTATGGTTTTAATGTTTTCTCATAATTTTTTTGCTACAAAAAACAATGAGGTAACTTGTTAATAAAC CATGGTGATCATTTTTAGCAGAGAGGAAAAAGGGCCAGAATTGGTTGCAGAAACAGTTTGTAAGGAAATCGAGTCGTGGT GATGATGATGACTCCAGAGAACTGGAGCATGCTGCTGCTGTAGCTGCTGCTGCCTTAGCAATTAATCAGCATGAATATGA GGTCTCTAAACAGAAGAGTGAGAGCCCGAGGGCCTCATTGACCAAGACCAAAAGCAAGGAGGATAGGGGAAAATCTTCAA TTTCCCTGCTTGGAAGTTCATCCAAGCGATTCTCAGGTAATATTCACCATTTTGAGAAAAGCAAAAAGCAAAAATTCACA AGTATAATGAACTTGTGTGCATATCTTTAGGTTCATTTAGATCCAGGGATGAGCAAGGTAAAAAGGTGCCAATATCCTCA CCTACAGAAGAAAAGAAGCCTGAAAAGGCCATTACCCTTGCACCATCAATGAAAAGGACTTCAACTGGTAAAAGACCTGA GACCTCAGCACCAAAAATTCCTCCACCACCGCCGCCGCCTCCACCTCCACCAATTAGGCAGGCTTCAAAAAAGCCTGGCC CTGTACCTAAGACTCCATTGAGACCAAGCACTCAAGAAACACCAATTAGGCAGGCTTCAACAAAGCCTGGCCCTGTAACT AAGACTCCATTGAGACCAAGCACTCAAGAAACAAAAGCAGATGAATGGGAGAGAACCGAGCTTGACAAGATCAGACAAAG GTATTTGGAAGTTATGTTCATTGAATTTCTACCAAAGAAACCGTTCTCGATCAGTAGTTGAGTTAAGCACTTACCTTGAA TCATGCATTGTATGCAGTTTATATACTAATATAAAAAATGACAGGTACGAGAAATTGAAAGAGACAATAGATTCATGGGA AAACAAGAAGAAGATGAAAGCCAGACACAAGCTAGTTAAGCAAGAGGTAACACTCAGCCATTCTTTATACACTGAAATTA GACTTCAAGTTTTGGATAATTCTATAACACTACCATGCACATTTTAAGAGTACATCATGCTTCAAATTGTTTGATGAATG GACTTATTGGCTATTGTGTGGTCTTAAAAAGAATGTTTCTTGGAGAATAAAATATTAAGCCATAAAATTATTATAGAGTG CCTAATCACAAACTCAACTGCAGAGTGAACTTGAGCGGAGAAGGTTCAAAGCTTTGCAGAGTTTCCAAAATAAGATGACG AATGTAGATAAAATTGCAGAGGGGGCGAGAACCAAGGCGGTGGAAAACCGAAAGAATGAAGAGCTAAAAACAAAGGAGAA GGCAAATGCAATTCGAACAACAGGCAAGCTGCCAGGGATTTGTTTCTGTTTCTAAGATCACCAACTACATAACGTCGATG GGTTTTGGGAACAAAAAAAGATCTAAACATTTGTTTCATAGTTCTATCTTGGTCTTCATTTCTATTGAAACATGACATGT TATGATAAAAATTGAAAAAAGAAAAACTGTAAAGTTGAGCAAATGTATGAGTTACTTCTGGTGTGAAACTAGTTCCAGTT TTACTTGCTTTAGGTTTTACTTTAGGTACTAATAATCACCTCCACAGTTTGATAGTCAACTTTCAGGAATGACAAATTAA CCCGTAAGATGACAAATGTTATGAAACTTTAGTGGTTAAGTATTTAAACAAGGTAACCCAAACTGTTACTTTCCCTTCAT TTTCACCTACACCAACTTTGGAGGCCACACAAGAGAAAACTATTCTGAAGTTACATGGGTATTTAGGATCACTACATCGA AAATAATAGAAAAGAGGGTTTGAATTTAAGAGAACCCAAACAAGTAGCATGGATA

Download Genomic Sequence

CDS sequence (LotjaGi2g1v0297100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGAATTTGTTAAATCAAATGAGGGTGCAATTTTCTAGTGTGGAGCAGGACAAAGCTGATGGCACTGGGGATCAGAA AATACCAATACAGAAAACTCAATCTTTCAAAGAGAGGAAAAAGGGCCAGAATTGGTTGCAGAAACAGTTTGTAAGGAAAT CGAGTCGTGGTGATGATGATGACTCCAGAGAACTGGAGCATGCTGCTGCTGTAGCTGCTGCTGCCTTAGCAATTAATCAG CATGAATATGAGGTCTCTAAACAGAAGAGTGAGAGCCCGAGGGCCTCATTGACCAAGACCAAAAGCAAGGAGGATAGGGG AAAATCTTCAATTTCCCTGCTTGGAAGTTCATCCAAGCGATTCTCAGGTTCATTTAGATCCAGGGATGAGCAAGGTAAAA AGGTGCCAATATCCTCACCTACAGAAGAAAAGAAGCCTGAAAAGGCCATTACCCTTGCACCATCAATGAAAAGGACTTCA ACTGGTAAAAGACCTGAGACCTCAGCACCAAAAATTCCTCCACCACCGCCGCCGCCTCCACCTCCACCAATTAGGCAGGC TTCAAAAAAGCCTGGCCCTGTACCTAAGACTCCATTGAGACCAAGCACTCAAGAAACACCAATTAGGCAGGCTTCAACAA AGCCTGGCCCTGTAACTAAGACTCCATTGAGACCAAGCACTCAAGAAACAAAAGCAGATGAATGGGAGAGAACCGAGCTT GACAAGATCAGACAAAGGTACGAGAAATTGAAAGAGACAATAGATTCATGGGAAAACAAGAAGAAGATGAAAGCCAGACA CAAGCTAGTTAAGCAAGAGAGTGAACTTGAGCGGAGAAGGTTCAAAGCTTTGCAGAGTTTCCAAAATAAGATGACGAATG TAGATAAAATTGCAGAGGGGGCGAGAACCAAGGCGGTGGAAAACCGAAAGAATGAAGAGCTAAAAACAAAGGAGAAGGCA AATGCAATTCGAACAACAGGCAAGCTGCCAGGGATTTGTTTCTGTTTCTAA

Download CDS Sequence

Protein sequence (LotjaGi2g1v0297100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MENLLNQMRVQFSSVEQDKADGTGDQKIPIQKTQSFKERKKGQNWLQKQFVRKSSRGDDDDSRELEHAAAVAAAALAINQ HEYEVSKQKSESPRASLTKTKSKEDRGKSSISLLGSSSKRFSGSFRSRDEQGKKVPISSPTEEKKPEKAITLAPSMKRTS TGKRPETSAPKIPPPPPPPPPPPIRQASKKPGPVPKTPLRPSTQETPIRQASTKPGPVTKTPLRPSTQETKADEWERTEL DKIRQRYEKLKETIDSWENKKKMKARHKLVKQESELERRRFKALQSFQNKMTNVDKIAEGARTKAVENRKNEELKTKEKA NAIRTTGKLPGICFCF

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	66	66	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	19	19	-	–
PANTHER	PTHR31471:SF55 View details on PTHR31471:SF55 Search for proteins/transripts with this domain View external data on PTHR31471:SF55	2	334	333	3.7E-108	–
PANTHER	PTHR31471 View details on PTHR31471 Search for proteins/transripts with this domain View external data on PTHR31471	2	334	333	3.7E-108	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	52	66	15	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	83	237	155	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	84	108	25	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	123	151	29	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	168	200	33	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	201	226	26	-	–
Pfam	PF03763 View details on PF03763 Search for proteins/transripts with this domain View external data on PF03763	227	330	104	5.9E-29	IPR005516 Show description in modal box View details on IPR005516 Search for proteins/transripts with this domain View on EBI InterPro Service
Coils	Coil View details on Coil Search for proteins/transripts with this domain	240	267	28	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0297100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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