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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0298400 |
Transcript ID | LotjaGi2g1v0298400.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | DUF538 family protein (Protein of unknown function, DUF538); TAIR: AT2G03350.1 DUF538 family protein (Protein of unknown function, DUF538); Swiss-Prot: sp|Q9M015|Y5161_ARATH Uncharacterized protein At5g01610; TrEMBL-Plants: tr|I3S0A6|I3S0A6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0298400 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:77308271..77310640) extracted from Lotus japonicus Gifu genome v1.2.
TCAACAAATTTCAACGACAAAAAGGCATCTCCACCTTCCTCTTTATTCAAAAGCAAAATAAAAAAAAAATAGAAATAAAA AAGAAATCTTAATTTGTAGTTAATCGAGAAATGTGCGATTTGTACAGTATGGTGTGTGTACATTAGCGTACTTTGTCTGT TACCCATTTGCCAGCTTGACGCATTTGATGCAAAGGTGAAGCCTTTATCATCATCATCCCTTCACTCACCCACATCACAT TTGAGGCTTGAGCTCTGTTGTTGTTGGGTGAGAATGGAGAAAGCTCTCACCAAGGTTTCAAGCTTGAAGGTGGGACTTGG AGACTCATGGTTTTCCAAGAAGGCCAAGGAGGAGTTTTCCAACATCTCTCAAGACATCTCTGTGAGTTTGTGTTTTCTGC CTTTCTCTTGCATTGCATTTCATCATTCTTCTTCAATGTGGGTTGTGTTGTAACTTTACCTTTTGGGGTATGAGAGATCT GAAAGAATAGGAACAACCATGTGCTGAGTTCCATGCTTTATCTGATTAAAATGCCCCCCAGATTTGAATAGAAGCCTGAG CTTGTTCCAGTGATTGTCATGGATTGAGTTTTTTTGGAAATGAATGTGGGTTTGATTGTCTGGGTAGAATGTGGGTTTGG TTTGGCCTCATCTTGAGAAATTTTATGGGGCTGTGACAGTCGTCAGATTTGTCATTTGTGTAATTTCTTGTAAGCCCATG TTTGAAAATTCTTTTACCATTTATCTTAAAGCCACAATTAATTATGGGGAGAAGCTTCTTTGAGTAGCTTATGCGTGTCA GAATTGATTCTGGTGAAATAGAAATTAACTCAAGCATGCTACAAGTTTAGATACTGTAGAACACTGAATTTGTCCTGGCT AGTGCCTTTATTAATTTAGAATAGCTCATAATTTGTAAGAGTGGTCCTTATTTGTTTACTGCCTATATTCCTAGATAACA ATATGTCACATATAGCTCTGTGATCTGTCATTACTCATTAATTGTGCGCATATTTGTGTGATGTGTAAATTCCTTGAATT TTATGTCAAACAAGTAGATACTCCTGTTTCCTGGTGTTATGTACTTTAAATATCAAGTTGGTCATCAGCTTCAGATCAGT AGGATTATGCAAATTTTGTCAAAGCTTGAAGCTGGATAAAATTGTACATTCAAAGTAGAAAAAACTATATTTAAGCAAGC AATCATGTTTCCTGTCTTGCCTTTGAGATTTTACTGTGGAGTTTGGCCTTGTTTTTTTGCTGACATAAGGTGTTTTTTTT GCAGACTTTCTCTAGTACGGTTGAAGAAAAGGCAAAATGGGTTTTCAACAAGTTAAAAGGTTTGAAAGCATTATGACATA CAATGTTCATATAATCATATGTGTTTATGCATGGTTCCTAAGATTTGCTTCACCAAATTAAGTAAACCAAATCAATTTTA ATGTATGGTTGGAGTGGACTGAGGATATATTCTGTGAACAACTTGCAATGTTGATGCTACTTATAACATTGTGCCCTCAT CCATATTCTAATTTTCATTGTTGTGTAGTCAGTCTTGTCCCCAACAAATTAACAGTTGTTGTAGGGCCTATCTGTTATGA CACTAGTCTCACTTCTCTTTAGGTATGCTTATACATTCAACTAATAACACTCTTTTCTTCTTTTCTTCCAATGCTTTCCC TCAGGCAAGCCACTGAAAAGCCTACCAGATCTCCTCCGCGAGTACAATTTACCGCCAGGGCTATTTCCCCAGAATGTAAT CTGTTATGAGTTTGATGAAGTCAAGGGTAAGCTGATTGTCTACTTGCCGTCTGCATGTGAGGTCAGCTTCAAGGACTCCT CTGTACTGAGGTACGCGACCCGAGTCAAAGGGGTTCTTACGAGGGGAAAGCTCTCAGCAATAGAGGGAATGAAAACAAAG GTTCTTGTATGGGTTAAGGTGACAAATGTGGCAGTTGAAGGTTACAAATCTGATAAGTTGTGGGTTACTGCTGGTGTGAA GAAGTCAAGGCCAAAGGATGCTTATGATACACCTCGTGATGCTGTTAGAGTATCAGAATTCTGAGTTTATAATGTTGGTT ATTATTCTGATTACTATGGAATAGATAGTGGAAATTATGGGAACTATTTACATAGTATTAGTAGGTGTAGTTAGGATCAT CTTCCCTATATTATCTAAATATGCTGGATGTATTGCAGTTCTGATCATTCATTGTCTCATTGAACGTTTGTTAATTTGGC AGCTCATGTAGGGACTCTAATGGTGCAATGCAAGTTGAAACTATGCATTTTTCCTAATTTTGCATTTTAAGTTTCTTGTG AATTTGAGGGCAATATTTGATGAACGTTTAACAATTGGTGTTTATTTTTG
CDS sequence (LotjaGi2g1v0298400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGAAAGCTCTCACCAAGGTTTCAAGCTTGAAGGTGGGACTTGGAGACTCATGGTTTTCCAAGAAGGCCAAGGAGGA GTTTTCCAACATCTCTCAAGACATCTCTACTTTCTCTAGTACGGTTGAAGAAAAGGCAAAATGGGTTTTCAACAAGTTAA AAGGCAAGCCACTGAAAAGCCTACCAGATCTCCTCCGCGAGTACAATTTACCGCCAGGGCTATTTCCCCAGAATGTAATC TGTTATGAGTTTGATGAAGTCAAGGGTAAGCTGATTGTCTACTTGCCGTCTGCATGTGAGGTCAGCTTCAAGGACTCCTC TGTACTGAGGTACGCGACCCGAGTCAAAGGGGTTCTTACGAGGGGAAAGCTCTCAGCAATAGAGGGAATGAAAACAAAGG TTCTTGTATGGGTTAAGGTGACAAATGTGGCAGTTGAAGGTTACAAATCTGATAAGTTGTGGGTTACTGCTGGTGTGAAG AAGTCAAGGCCAAAGGATGCTTATGATACACCTCGTGATGCTGTTAGAGTATCAGAATTCTGA
Protein sequence (LotjaGi2g1v0298400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEKALTKVSSLKVGLGDSWFSKKAKEEFSNISQDISTFSSTVEEKAKWVFNKLKGKPLKSLPDLLREYNLPPGLFPQNVI CYEFDEVKGKLIVYLPSACEVSFKDSSVLRYATRVKGVLTRGKLSAIEGMKTKVLVWVKVTNVAVEGYKSDKLWVTAGVK KSRPKDAYDTPRDAVRVSEF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 180 | 180 | 1.8E-80 | – | |
PANTHER | 1 | 180 | 180 | 1.8E-80 | ||
SUPERFAMILY | 15 | 178 | 164 | 6.28E-47 | ||
Gene3D | 39 | 180 | 142 | 4.2E-53 | ||
Pfam | 63 | 168 | 106 | 6.1E-29 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0298400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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