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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0301200 |
| Transcript ID | LotjaGi2g1v0301200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | NAC domain protein; TAIR: AT1G69490.1 NAC-like, activated by AP3/PI; Swiss-Prot: sp|O49255|NAC29_ARATH NAC transcription factor 29; TrEMBL-Plants: tr|I3SDC9|I3SDC9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0301200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:77547983..77549908) extracted from Lotus japonicus Gifu genome v1.2.
CAACAACATTGAATGAATGCACGCACCCCATTTAATGTGGATAAACACGTTCAAAGGAAAATGTCAGTTAAGAGATAGGT GAAGTGAACCAAGTTCATGGACCCTCATTGGATTTTGGCACACGCTTGAATTTGATGACGCACACACATAAAAGTCATAC TAGGAACCAATCAAGTCCATGCAGCAAACTCCACATACATAAAACGACAAGAAACCTCAAACATAAAAGGCACATCCACC TCTTTGTAAACATTTCAAACACCTTGATTTCTCTTCAACCCTTTTCCAAGTTTCCTTCCAATCCTTAATTTCCCAAAATC ACCAAAGAAGCAAAGTTTTTTTCTTTTCTTATTTTTCTAGACTTTCCATTTTAATCTATGGAGGGAAGCTCAAGCTCTGA ACTCCCACCTGGCTTCAGGTTTCATCCTACAGATGAGGAACTAATTGTGCACTACCTTTGTAATCAAGTCTCATCACATC CATGCCCTGCACCTATCATCCCTGAAGTGGATATCTATAAATTTGATCCATGGGAATTGCCTGGTACATATGCATACAAA TATCACTTGTTAAACCTTTATCTGTCTGTCTGATAGTATGTTTGGATCAACTTTTCTTTACTTCGAAATCAATTGTAATT TTTTTTCTTTCTAAACATGCACTGAATTTGGCTGATAAAATGTTCCTGTGTGTAAATGCAGATAAAACAGCTTTTGGAGA AAAGGAATGGTATTTCTTTAGTCCAAGAGAGAGGAAATATCCAAATGGGGCGAGGCCTAATAGGGCAGCTGTGTCTGGGT ATTGGAAGGCTACTGGCACAGACAAATCAATCTTTAGTGGGTCTCAGCATGTTGGGGTGAAGAAAGCTTTGGTCTTTTAC AAGGGTAAGCCACCAAAGGGTGTCAAGACAGATTGGATCATGCATGAGTATAGACTAATTGGAACAACAACACAACCCCC TAGGCAAATTGGGTCCATGAGAGTAAGCCTTTTTACCCTTAGCATAACTGTTACATATATACTTTCTATTAATTATTTAC GGCACGTTTTGAAATCTTTCTACAGTATAATCAATTCTGTGGAGAAACTTTTTTGTTCCAGAGTTGATTATAATGAAATG AAAACTCATCCAAACATGTTATTAATGATTTTGCTTTGATTGACCTTGTTCTTGTGCTTTTGGATGTGCAGCTTGATGAC TGGGTCCTGTGTAGGATCTATAAGAAGAAGGCCACAGCAAATTCACTAGAGGTAAAAGAGGAAGAATACCCAACAACTCC AATTGATCTGAAAAGAGCAAATGAAGAGTGTGAACAGAAAATTGATCTGAAATTTCCAAGGACTAATTCCCTTGCTAATC TTTTGGATGTGGATTACTTGGGTTCAATTTCACAGATTTTATCTGATGGATCATATAACTCAACATTTGACTTTCAACTT AACTCTGCACATGGTGGAACAGACCCATTACAGCTGATGGAAATGCCTACTAACTCTAGTTATGCAGCAGATTCAGGGAA GCTACAAGTGAAACGAAACAACACCATCAACCCAACGATATTTGTGAAACAAGATTATGACCATAGAGGACAATAGTTAA TCCCAATATAATAGACTTAATTAGTTAGGCATCATGACTATAAGCGTCACCAATAAAATAGTCCTCAAGATTCTTTGTAA AAATGTATATTACATCACCTAATGAATATATTTTCAGTGATCTCAATCTGATAGTTCCATAAACATTGTTTAACATCATT CATACAAGCTAATGACACTTGACAAGTTTATTATCTCTTTAATTTAAGTTCACAAATATGGAATTACATTCCTTATTCGG CTATAGTTCAAACCAGATTCTTAGATCATAGTTTGGCAGCATTTGTAGTTGAACCACTTTTTTCCTTCGTGAACGTTATT TCAATG
CDS sequence (LotjaGi2g1v0301200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGGAAGCTCAAGCTCTGAACTCCCACCTGGCTTCAGGTTTCATCCTACAGATGAGGAACTAATTGTGCACTACCT TTGTAATCAAGTCTCATCACATCCATGCCCTGCACCTATCATCCCTGAAGTGGATATCTATAAATTTGATCCATGGGAAT TGCCTGATAAAACAGCTTTTGGAGAAAAGGAATGGTATTTCTTTAGTCCAAGAGAGAGGAAATATCCAAATGGGGCGAGG CCTAATAGGGCAGCTGTGTCTGGGTATTGGAAGGCTACTGGCACAGACAAATCAATCTTTAGTGGGTCTCAGCATGTTGG GGTGAAGAAAGCTTTGGTCTTTTACAAGGGTAAGCCACCAAAGGGTGTCAAGACAGATTGGATCATGCATGAGTATAGAC TAATTGGAACAACAACACAACCCCCTAGGCAAATTGGGTCCATGAGACTTGATGACTGGGTCCTGTGTAGGATCTATAAG AAGAAGGCCACAGCAAATTCACTAGAGGTAAAAGAGGAAGAATACCCAACAACTCCAATTGATCTGAAAAGAGCAAATGA AGAGTGTGAACAGAAAATTGATCTGAAATTTCCAAGGACTAATTCCCTTGCTAATCTTTTGGATGTGGATTACTTGGGTT CAATTTCACAGATTTTATCTGATGGATCATATAACTCAACATTTGACTTTCAACTTAACTCTGCACATGGTGGAACAGAC CCATTACAGCTGATGGAAATGCCTACTAACTCTAGTTATGCAGCAGATTCAGGGAAGCTACAAGTGAAACGAAACAACAC CATCAACCCAACGATATTTGTGAAACAAGATTATGACCATAGAGGACAATAG
Protein sequence (LotjaGi2g1v0301200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEGSSSSELPPGFRFHPTDEELIVHYLCNQVSSHPCPAPIIPEVDIYKFDPWELPDKTAFGEKEWYFFSPRERKYPNGAR PNRAAVSGYWKATGTDKSIFSGSQHVGVKKALVFYKGKPPKGVKTDWIMHEYRLIGTTTQPPRQIGSMRLDDWVLCRIYK KKATANSLEVKEEEYPTTPIDLKRANEECEQKIDLKFPRTNSLANLLDVDYLGSISQILSDGSYNSTFDFQLNSAHGGTD PLQLMEMPTNSSYAADSGKLQVKRNNTINPTIFVKQDYDHRGQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 6 | 161 | 156 | 4.05E-66 | ||
| PANTHER | 7 | 242 | 236 | 2.4E-114 | – | |
| PANTHER | 7 | 242 | 236 | 2.4E-114 | – | |
| ProSiteProfiles | 9 | 161 | 153 | 61.025 | ||
| Pfam | 10 | 134 | 125 | 2.4E-39 | ||
| Gene3D | 18 | 167 | 150 | 1.2E-65 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi2g1v0301200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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