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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0304000 |
| Transcript ID | LotjaGi2g1v0304000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT4G21330.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|O81900|DYT1_ARATH Transcription factor DYT1; TrEMBL-Plants: tr|V7BTB2|V7BTB2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0304000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:77771571..77772890) extracted from Lotus japonicus Gifu genome v1.2.
GAAATACTGGTTTCTCTATTCCTATGCAAAAATGGGACATGTATATGATGACAGGCTAACCATTTCTCTGGAAGAGTTGG GCTTTAATGCTGAAAATGGTAGCAACAGGGGAAGGATGGGCAGGAGGAGCTATGACGACGACGCCAAAACGTTCAAATCC AAGAACCTTGAGTATGAAAGGAAAAGAAGAGAGAAGCTCAGTACTAGGCTCTTGATGCTGAGGTCTTTAGTACCCATTGT CACAAATGTAATCACCTAATAAACTTTGCTTTCTTATACATAAAGTCTTTTCATCTAATGTGTTTTGTTCAGTATTCAAT TGTTCATGTCCTTAATTGGATTAGTTTTTTCATCAAATGATGGAATTGAAATTGGTTGTAAATCTTGGTTCCAGATGAAC AAAGCAACCATTATTGATGATGCAATCACTTATATCAAGGAGTTGCAAGATCAAGTTGAGACCCTCACACGAGAGCTGCT TCAGGAAACGGAAGCAACCTCAAAAGAAGTAGCAAAGCCAAAGATAAATGATTTTGATCTTGCAGAAGAGATGAAGAAAT GGGGAATACAGGTTATCTACAAATTTTTGTCTTTCATTAATTGTATGAAATTCCTATATAAATACAAGTATTAGTGATCT TGTTTCTATTACTTTCTACAGGAAGAGGTACATGTGACAAAAATTGATGGGAATAAATTGTGGGTCAAGATGATCATTGA GAACAAGAGGGGGAGTTTCAAGAAATTGGTTGAGTTTCTGGATACTTATGGCATTGCATTGATAGACACCAATCTCACAG CCATGAAAGGAGCCTTATTGATAACAACATGCATACAGGTGATAAAATCCACTAGTAACTAAAATATTATAACAGGAGAG TAGTTTATGCTGTAGGCTCTCAAACTCATTAGAAGAAACTAAAAGATGAACTTTGATTTATCTTTTTATTTTAGCTTACA AACACTCATGAGAAACTTGGAGATTGTTTTAGAAATTGATTATATGATTGTTATTTTTCAGGGCATGGATGGTCAAACAC TTGAAGTTGAGCAGATCAATCAGTGGTTGCTTGATATTCTAAGAGCTATTTAGAGTAACTCGATAACTTATTATGCACTC ATCATCAAATTGAAATCGACATAAGCTAGTTTTATTCTTGGGTCAACTTGTGCTTCCAATAGTATTGAACAAGTTTAATG TGCATCCGTTCTGTATGATGGGAATGAGAGAACTCTTAAACTACATTCTTGATTTAGTTTTTCAATAATTTGCAAACAAA CGAGATATACCATAAGTTGGCTTCTAACAGCATCAAATCT
CDS sequence (LotjaGi2g1v0304000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGACATGTATATGATGACAGGCTAACCATTTCTCTGGAAGAGTTGGGCTTTAATGCTGAAAATGGTAGCAACAGGGG AAGGATGGGCAGGAGGAGCTATGACGACGACGCCAAAACGTTCAAATCCAAGAACCTTGAGTATGAAAGGAAAAGAAGAG AGAAGCTCAGTACTAGGCTCTTGATGCTGAGGTCTTTAGTACCCATTGTCACAAATATGAACAAAGCAACCATTATTGAT GATGCAATCACTTATATCAAGGAGTTGCAAGATCAAGTTGAGACCCTCACACGAGAGCTGCTTCAGGAAACGGAAGCAAC CTCAAAAGAAGTAGCAAAGCCAAAGATAAATGATTTTGATCTTGCAGAAGAGATGAAGAAATGGGGAATACAGGAAGAGG TACATGTGACAAAAATTGATGGGAATAAATTGTGGGTCAAGATGATCATTGAGAACAAGAGGGGGAGTTTCAAGAAATTG GTTGAGTTTCTGGATACTTATGGCATTGCATTGATAGACACCAATCTCACAGCCATGAAAGGAGCCTTATTGATAACAAC ATGCATACAGGGCATGGATGGTCAAACACTTGAAGTTGAGCAGATCAATCAGTGGTTGCTTGATATTCTAAGAGCTATTT AG
Protein sequence (LotjaGi2g1v0304000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGHVYDDRLTISLEELGFNAENGSNRGRMGRRSYDDDAKTFKSKNLEYERKRREKLSTRLLMLRSLVPIVTNMNKATIID DAITYIKELQDQVETLTRELLQETEATSKEVAKPKINDFDLAEEMKKWGIQEEVHVTKIDGNKLWVKMIIENKRGSFKKL VEFLDTYGIALIDTNLTAMKGALLITTCIQGMDGQTLEVEQINQWLLDILRAI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 21 | 213 | 193 | 4.4E-76 | – | |
| PANTHER | 21 | 213 | 193 | 4.4E-76 | – | |
| Gene3D | 33 | 117 | 85 | 9.5E-13 | ||
| ProSiteProfiles | 40 | 89 | 50 | 14.227 | ||
| SUPERFAMILY | 40 | 101 | 62 | 6.28E-16 | ||
| SMART | 46 | 95 | 50 | 2.0E-12 | ||
| Pfam | 46 | 90 | 45 | 1.1E-8 | ||
| CDD | 49 | 94 | 46 | 1.1056E-10 | ||
| Coils | 79 | 106 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi2g1v0304000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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