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LotjaGi2g1v0304000.2

Overview

Field Value
Gene ID LotjaGi2g1v0304000
Transcript ID LotjaGi2g1v0304000.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT4G21330.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|O81900|DYT1_ARATH Transcription factor DYT1; TrEMBL-Plants: tr|V7BTB2|V7BTB2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0304000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:77771596..77774025) extracted from Lotus japonicus Gifu genome v1.2.

CACAAGTTTACTAGCAGGTCACCCCTTTTTTAATTTAAATTAGGTAAAATAAAAAAATAAATCTAAATCTGCCATCACCC TCCTTAATCTTCTTCTTTCATCTAAACTCCAGATATTCATCTTCACTCTTCATCTTCTTTCATTATTCATCTTCTAAATC AACATTTTTCATATTAGAACCCCCCAAAACCCAGACCACACCACCACCAACCCCAGCCCACACCGCACCACCACCCCCAA CCACCACCAAGTTGATGTATTTTTCGCACCGAACCTCCATGATCCCGACCCACCATCGACAGAATCAAACCAGATATGAA CTCCTCGACCTCGTCGTCTTCAATTGAACCTCATGACCCTTGATGAGAGGTTATTGTCGGTGACTGTGCTGTTGTGGAAG TTGTTAGTGGTGCTGGCGTTGGACGATAGGGAAGAGAAGAGGATTCTGATGTTCAATTGAAATGGGTTGTTGGTTGAGGG TGTAGATGTTGAAGATGGTAAATACAATGGTTGGTTTCCTTTCTGGGTTGTGTAATATTCACTATATGTTTTGTCTTTAA TTTCACTTCTTTTCTGGATTTTATTGTTAGAGGAGGCAGGTGATAATAATAAAGATTAGAGATTAATTTGATTTAACACT AATTAATTTCATTTTTAAAAAAATGATTTAACTTGTGATAACAGGTCAATTTAGGTTTGTGCAACTTTGCAAAAGTATTT CTTTGTGTATAGTAAATGAACCCAAAAAATTCGTTCAATTTTTTTTTAAAAGTAATTTTTATCTTAAAATGCATGCTAAC AAGTGTTTATAAGTCCGGCGGATATCTAAAAATAGCATGAATTGAACCATTTCATTTCAATAAACATGCTCTTCTTACCA TATATAATTTTAGTCCAATCACTTTAAAACAAACAAGAATTGAGTTAAAAAAGTTGTGAAAGGTTGGTCAAATCTGTTAG GCCCATTCTAACAATGTAACAAACAATGGATCTAAAGTGGAATTTTTTGTTCTCTCTCTCATAAGGAACACATGGATAAA CTTGGACCAGACTAAAGCCCCTCAAAACACATGATGCGTTTGTGAGAAGCCCTTATATTGCCTTCAATAATTCAGTTTGT AATCACTCTGACACTGAAATACTGGTTTCTCTATTCCTATGCAAAAATGGGACATGTATATGATGACAGGCTAACCATTT CTCTGGAAGAGTTGGGCTTTAATGCTGAAAATGGTAGCAACAGGGGAAGGATGGGCAGGAGGAGCTATGACGACGACGCC AAAACGTTCAAATCCAAGAACCTTGAGTATGAAAGGAAAAGAAGAGAGAAGCTCAGTACTAGGCTCTTGATGCTGAGGTC TTTAGTACCCATTGTCACAAATGTAATCACCTAATAAACTTTGCTTTCTTATACATAAAGTCTTTTCATCTAATGTGTTT TGTTCAGTATTCAATTGTTCATGTCCTTAATTGGATTAGTTTTTTCATCAAATGATGGAATTGAAATTGGTTGTAAATCT TGGTTCCAGATGAACAAAGCAACCATTATTGATGATGCAATCACTTATATCAAGGAGTTGCAAGATCAAGTTGAGACCCT CACACGAGAGCTGCTTCAGGAAACGGAAGCAACCTCAAAAGAAGTAGCAAAGCCAAAGATAAATGATTTTGATCTTGCAG AAGAGATGAAGAAATGGGGAATACAGGTTATCTACAAATTTTTGTCTTTCATTAATTGTATGAAATTCCTATATAAATAC AAGTATTAGTGATCTTGTTTCTATTACTTTCTACAGGAAGAGGTACATGTGACAAAAATTGATGGGAATAAATTGTGGGT CAAGATGATCATTGAGAACAAGAGGGGGAGTTTCAAGAAATTGGTTGAGTTTCTGGATACTTATGGCATTGCATTGATAG ACACCAATCTCACAGCCATGAAAGGAGCCTTATTGATAACAACATGCATACAGGTGATAAAATCCACTAGTAACTAAAAT ATTATAACAGGAGAGTAGTTTATGCTGTAGGCTCTCAAACTCATTAGAAGAAACTAAAAGATGAACTTTGATTTATCTTT TTATTTTAGCTTACAAACACTCATGAGAAACTTGGAGATTGTTTTAGAAATTGATTATATGATTGTTATTTTTCAGGGCA TGGATGGTCAAACACTTGAAGTTGAGCAGATCAATCAGTGGTTGCTTGATATTCTAAGAGCTATTTAGAGTAACTCGATA ACTTATTATGCACTCATCATCAAATTGAAATCGACATAAGCTAGTTTTATTCTTGGGTCAACTTGTGCTTCCAATAGTAT TGAACAAGTTTAATGTGCATCCGTTCTGTATGATGGGAATGAGAGAACTCTTAAACTACATTCTTGATTTAGTTTTTCAA TAATTTGCAAACAAACGAGATATACCATAA
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0304000.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGACATGTATATGATGACAGGCTAACCATTTCTCTGGAAGAGTTGGGCTTTAATGCTGAAAATGGTAGCAACAGGGG AAGGATGGGCAGGAGGAGCTATGACGACGACGCCAAAACGTTCAAATCCAAGAACCTTGAGTATGAAAGGAAAAGAAGAG AGAAGCTCAGTACTAGGCTCTTGATGCTGAGGTCTTTAGTACCCATTGTCACAAATATGAACAAAGCAACCATTATTGAT GATGCAATCACTTATATCAAGGAGTTGCAAGATCAAGTTGAGACCCTCACACGAGAGCTGCTTCAGGAAACGGAAGCAAC CTCAAAAGAAGTAGCAAAGCCAAAGATAAATGATTTTGATCTTGCAGAAGAGATGAAGAAATGGGGAATACAGGTTATCT ACAAATTTTTGTCTTTCATTAATTGTATGAAATTCCTATATAAATACAAGTATTAG
Download CDS Sequence

Protein sequence (LotjaGi2g1v0304000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGHVYDDRLTISLEELGFNAENGSNRGRMGRRSYDDDAKTFKSKNLEYERKRREKLSTRLLMLRSLVPIVTNMNKATIID DAITYIKELQDQVETLTRELLQETEATSKEVAKPKINDFDLAEEMKKWGIQVIYKFLSFINCMKFLYKYKY
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31945
21 132 112 1.0E-40 –
PANTHER
PTHR31945:SF20
21 132 112 1.0E-40 –
Gene3D
G3DSA:4.10.280.10
34 105 72 5.6E-13
IPR036638
ProSiteProfiles
PS50888
40 89 50 14.227
IPR011598
SUPERFAMILY
SSF47459
40 101 62 2.62E-16
IPR036638
Pfam
PF00010
45 90 46 6.0E-9
IPR011598
SMART
SM00353
46 95 50 2.0E-12
IPR011598
CDD
cd00083
49 94 46 1.07107E-10
IPR011598
Coils
Coil
79 106 28 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0046983
Molecular function Protein dimerization activity The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0304000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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