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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0304100 |
| Transcript ID | LotjaGi2g1v0304100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | NAC domain-containing protein, putative; TAIR: AT1G26870.1 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein; Swiss-Prot: sp|Q9ZVH0|FEZ_ARATH Protein FEZ; TrEMBL-Plants: tr|A0A151TFU2|A0A151TFU2_CAJCA Putative NAC domain-containing protein 9; Found in the gene: LotjaGi2g1v0304100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:77774561..77777161) extracted from Lotus japonicus Gifu genome v1.2.
CTCTTTTTAAGAGCCTTGCCTTTCTTTCTTTGCTTGTTGTGATGAGGAGCAAAACCTAAGCAATCCTCGCAAAACACACA CACTCACTCCATCAAAGTCAGCAGAAAAGGCGGCTGAACCTTCGGATGTAGACCCCTCCTCAGGAAGCATATAATCACTT CAAATTAAGTGAAACTTAACTCTCACTTTTCTCCTCTTTGTCTTTCATGTTTCACCACTTCTCATCATCACAATCTCATG CACTTTCTGTTCTTTAAAACTTTTTGAAAGGAGCTTCCACTTTTCTGTCTAGTTTCTTTGTCTCTTCTCTCTCTCACTAA AAAATATTGAGGAGACACTACAAAGATCTCTCTCTCTCTCTTTTACATATTGAAGAGGGTTAGGCTTTATATAAATTTCT AAAAGAAAATAGGTGGAGACATAGATATGGAAGAGAGAAATGATCATGCTGAGAAACTGGATGAAGTTTTGCTACCAGGG TTCAGGTTTCATCCAACTGATGAGGAACTTGTTGGGTTCTACCTCAAGAGAAAGATTCAGCAGAGACCTCTTTCCATTGA GCTCATCAAGCAACTTGATATCTACAAATATGACCCTTGGGATCTTCCAAGTAAGACACAAATCTGTCTTGGTTCATGTA TAACTCTTATAAACACTTCTTTGAACCTGAACTCTAGCCTTGCTAAGATTTATTTAAGTGCCTTTTTCCTGTGTAAATTT AGGGTCTCTTATATACTATATAATATAACTAAGGTTATGTTTGGATCCTAACGGTAGCACTCACTTCAAGAGTGGTATTT GAATCCGTACTAACTAGCTACTTTTGTGATTCTAATGTATGCAGAGTTGGCCTCAACAGGAGAGAAAGAGTGGTATTTCT ACTGTCCTAGGGACAGAAAATACAGAAACAGTGCAAGGCCTAATAGGGTAACTGGAGCTGGGTTCTGGAAAGCTACAGGA ACTGACAGACCCATCTACTCCTCAGAAGGTTCCAAGTGCATTGGCCTGAAGAAATCCCTAGTTTTTTACAAAGGCAGAGC TGCCAAAGGAGTCAAAACTGACTGGATGATGCATGAGTTCAGGCTACCTTCTCTCACTGACCCAATGTCCCAAAAGAAGT ACATAGATAAAACCATTCCAGCTAATGTAAGTAATTAAAACTTATTTAAACTTTATTTCCTTGCAATGTTAGAAGCTTTT CAAGTGTTTATAATATGAAATATTATTCGTGGACATCCGTATAATGCAGACACCCGCATACACCCTGAGTAGAAAAGTAA GATAAAAGAGAAGTAGGAGATGTGATGTGATAAAAAGACTAAAAGAGAGAGAAAGAAAAATGAAGTGTCTAACTATTTAG GAGTCTGAATATAATTAATAGTATAATATCATTCATGAACTTCTTTAACTTGTTTCTGAACTTGCAGGAATCTTGGGCAA TCTGCAGGATATTTAAGAAAACCAACTCTACAGCACAGAGAGCTCTGTCTCACTCTTGGATCTCTTCCCTACCTGAAACA AGAACCTCTGATATGCTAACTAAAGAACAAGAAAGCACCCAGTTTTATTCACCCAACATGCCACTGACAAAGAAAACTAG CTTATTAGCCAGTCAGTTTTGCACTAACAACAATGATGGCCAAGACTTAACCACTGCTAGTAGTACTTTTTGTCCTTTAG ATAATGTTGCCTCTTATAAATCCCTTCTTAACCCTTTGATGCACAAAGCCTTTGACCATTTTCCCCTATCAAATGGAGAT CTCAACACTGGCTTGATATTCTCATCATCTCCACTTGAAACAATATCTAATGCTAATGCCAAATCTTCAATGGATGTTTC TTCCATGTTGTTGAACATGTCATCCTCAGTGCTTGGAGATTTTAGCAACAACACTCCTCATGAGGACACAACTACAAGCT TCAATGGTGGGTTGCAACTGCAAGACCACTGTCATGACTACCTAATGCAAGCCACATTTGGGAACCAATATGATAATAAT GCATTAGTGAAGGTTCCTAATGTGAATATTGTGCCTCGTTTTGGTGACCAAGAGTTGGAGACAGTACGATCCATTGGGTT CCCATTCAGTATTGGTGATGCATGGAAGTCAAATATGCTTTGGGATACTTCCTCTAATTGTCCTTGTGATGTTCCCTTGA GTCATTCCACAACCAAGTGCTATACTTAGTTAGTCCCTTTTACACAGATTAGAAGCCCTTGTTTTTGTAGCTTCTAGTGG GAATGAAGTAGCTAGCGATGACTCTGACTTCTTAACTTAGATTTCTGTTCAATTTAAATTAGTGTGGTTCACATTTTCAA ATTTTTACACTATCCTCACATTAGAGTGGTTTGAGTTTCTCTACTCTTCCCATTTAAATATGAGGACTGTGAGGATAGTG TAAAAATTTGGAAATTGAAATTGTTAGTTTCCTTTGAATTAACATGCAGGAATTTTTTTTGTTTTGTTTTGTTGATCAGT TTGAAATTAAACATTTTGTAACTTGATGCAATATGTGAACTCAAATGTCTATGCATGGAAAAGAAGAAATGCGAGAGTTT CAAAACGAGAATGAGAGTTAAGCAAATAAGGCCAATTGCCA
CDS sequence (LotjaGi2g1v0304100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGAGAGAAATGATCATGCTGAGAAACTGGATGAAGTTTTGCTACCAGGGTTCAGGTTTCATCCAACTGATGAGGA ACTTGTTGGGTTCTACCTCAAGAGAAAGATTCAGCAGAGACCTCTTTCCATTGAGCTCATCAAGCAACTTGATATCTACA AATATGACCCTTGGGATCTTCCAAAGTTGGCCTCAACAGGAGAGAAAGAGTGGTATTTCTACTGTCCTAGGGACAGAAAA TACAGAAACAGTGCAAGGCCTAATAGGGTAACTGGAGCTGGGTTCTGGAAAGCTACAGGAACTGACAGACCCATCTACTC CTCAGAAGGTTCCAAGTGCATTGGCCTGAAGAAATCCCTAGTTTTTTACAAAGGCAGAGCTGCCAAAGGAGTCAAAACTG ACTGGATGATGCATGAGTTCAGGCTACCTTCTCTCACTGACCCAATGTCCCAAAAGAAGTACATAGATAAAACCATTCCA GCTAATGAATCTTGGGCAATCTGCAGGATATTTAAGAAAACCAACTCTACAGCACAGAGAGCTCTGTCTCACTCTTGGAT CTCTTCCCTACCTGAAACAAGAACCTCTGATATGCTAACTAAAGAACAAGAAAGCACCCAGTTTTATTCACCCAACATGC CACTGACAAAGAAAACTAGCTTATTAGCCAGTCAGTTTTGCACTAACAACAATGATGGCCAAGACTTAACCACTGCTAGT AGTACTTTTTGTCCTTTAGATAATGTTGCCTCTTATAAATCCCTTCTTAACCCTTTGATGCACAAAGCCTTTGACCATTT TCCCCTATCAAATGGAGATCTCAACACTGGCTTGATATTCTCATCATCTCCACTTGAAACAATATCTAATGCTAATGCCA AATCTTCAATGGATGTTTCTTCCATGTTGTTGAACATGTCATCCTCAGTGCTTGGAGATTTTAGCAACAACACTCCTCAT GAGGACACAACTACAAGCTTCAATGGTGGGTTGCAACTGCAAGACCACTGTCATGACTACCTAATGCAAGCCACATTTGG GAACCAATATGATAATAATGCATTAGTGAAGGTTCCTAATGTGAATATTGTGCCTCGTTTTGGTGACCAAGAGTTGGAGA CAGTACGATCCATTGGGTTCCCATTCAGTATTGGTGATGCATGGAAGTCAAATATGCTTTGGGATACTTCCTCTAATTGT CCTTGTGATGTTCCCTTGAGTCATTCCACAACCAAGTGCTATACTTAG
Protein sequence (LotjaGi2g1v0304100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEERNDHAEKLDEVLLPGFRFHPTDEELVGFYLKRKIQQRPLSIELIKQLDIYKYDPWDLPKLASTGEKEWYFYCPRDRK YRNSARPNRVTGAGFWKATGTDRPIYSSEGSKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRLPSLTDPMSQKKYIDKTIP ANESWAICRIFKKTNSTAQRALSHSWISSLPETRTSDMLTKEQESTQFYSPNMPLTKKTSLLASQFCTNNNDGQDLTTAS STFCPLDNVASYKSLLNPLMHKAFDHFPLSNGDLNTGLIFSSSPLETISNANAKSSMDVSSMLLNMSSSVLGDFSNNTPH EDTTTSFNGGLQLQDHCHDYLMQATFGNQYDNNALVKVPNVNIVPRFGDQELETVRSIGFPFSIGDAWKSNMLWDTSSNC PCDVPLSHSTTKCYT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 397 | 397 | 3.3E-186 | – | |
| PANTHER | 1 | 397 | 397 | 3.3E-186 | – | |
| SUPERFAMILY | 13 | 173 | 161 | 6.41E-58 | ||
| ProSiteProfiles | 15 | 173 | 159 | 57.406 | ||
| Pfam | 17 | 142 | 126 | 3.6E-37 | ||
| Gene3D | 24 | 179 | 156 | 5.7E-60 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi2g1v0304100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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