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LotjaGi2g1v0304700.1

Overview

Field Value
Gene ID LotjaGi2g1v0304700
Transcript ID LotjaGi2g1v0304700.1
Lotus japonicus genome version Gifu v1.2
Description Origin recognition complex subunit 6; TAIR: AT1G26840.1 origin recognition complex protein 6; Swiss-Prot: sp|Q9ZVH3|ORC6_ARATH Origin of replication complex subunit 6; TrEMBL-Plants: tr|I1JE37|I1JE37_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0304700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:77812331..77815301) extracted from Lotus japonicus Gifu genome v1.2.

AGCGAAAAACCGCGGCATAAATGAAAAGTTGAAACCCAAAATTTGGGCGGCGAAGGAAGGCGCGAAACAAAAACTTTCCC GGCAAACCGCGCGCGCGTGCGACGCTCTTCAAAGCCCAAACATGGCCACTCCCTCCCTCCCTCTCCACTCTCCTCACGCC TTCAAAACGCAAATCTCAACTCTCTCACTCTCACCTTCTTCACAGAAATAAAACGCAAAATGGAGCTTTCATCGTTAGCC AAGAAGCTTGGACTCACCGATTCCAAACTCGTCATCCGAAAAGCCGCCGAACTCCGCCGCCTCGCCGACGTCCAGTTCGA TTCCTCCATCATCGGCGTTGTAAGTTCCATTTCAATCAAACAATCAATCAATCAATCTACACCGTTAACCATTCACAGAT CTGTAATCTAATCAGTTTAATGTAACCAACTTGCAGGGTGAGATCGCTAAAGCGGTTATCTGTTTGGAAATCGCCGCCAC CAAGCTCGGTGTCCTCTTCGATCGATCCTCTGCGGTTAGGCTCAGTGGAATGTCACAAGGAGCTTACATCAGATCCTACA ATTCTCTCCACAACGGGATCGGTGTCAAGTGCGTTGCGTTTCATTTTCCATTTTCCCTCTTTTCCCCTAAACCCTAAATC AATCACTCGATTCAATTGAATTAACAAGAACTGTTTGATTTGTGTTTGTAGGATGAGGCTTGATGTAAGAGAACTTGCAA TTCAGTTTGGTTGCGTTCGAATTATCCCTATGGTTCGTGACGGTCTCAAGAGGTGAGTTTCGTTTTTTGTTCACTTTTTT AGTTTGCACATAATCTGTTTGATGAAATGCCTATGAGAATAAATGGTTGCACTGTTTGATTGCAGTTATAAGGAGCGTTT TCTTGCATCGTTGCCGCCCTCTCGACGTGCCAGCGCTGATTTTACTCGGCCGGTGTTCACTGCTGTTGCTTTTTATCTAT GTGCCAAAAAACATAAGGTAATTTAGTGTGGCCAGCATTATCTGTATCTCACATACCCTTAGTCCTTAGATGAGATGTAA TGATATGCTTGTTTTTTGCAGCTGAAAGTTGACAAGATTAAGCTTATTGAACTATGCGGTACATCTGAATCTGAATTTTC TAGTGTAAGTGCTATGAGCATGCAAGCAAGTCAATGTCTACTAATGTGTGATGATTTTATTAGTTTTATGAGGAATGTTA ATTGTTTATAAATGGGTTTGGAACGTTGTTGCAGGTTTCTACTTCTATGAAGGATTTGTGCCATGATGTTTTTGGGATTG CTAAGGAAAAGAAAGATCCTAGAGAAGTAACCTCAAATCGAGGTAAATCCATTTTTCATTTAGCTCTTGATAATTGCTAT GCATATATTGCTAAAATACTAACATTATTTTCAGATTTTGTTATGTTTCTTCCCCCATCCTAATTTTGTATTAAGCAATT TCTTTTCTGCTTCCCTCTTTATTTGCACAGAATTGCTTGATGTGTTACCAAGTAAAAGGAAAGCTGAGGATGGTGGTTAT GTGTCTGATGATGGGGCTGAGGTACTCCCTACTCACCTTTCATCACAACTTACATAATTTTGCTGTTCTCTTTAATTCTG GGCTAAGTTAAGGGATGCACTCTCTAATTAGGCTTCCATATGATGCTCAACTTTAACCCCTTTTAGAGGGTCTTGAATAG ACCTTATGGATAAGATTTCTTCTTGGTTTTTCCTGGGTTTGATTGAACACATTAATCATAGTTGAATAACTTTCTGATAT AGTCCTCTGTTCTGTAATTTAGTAATAGAAAGTTAGGAACAGTAAAATTTGATTGTTTTGTAAGTTCCTCCTTGCTTTGA GCAATTTTTACTTCCAAATATAGACAAGGGCAATGTCCTATTTCTAGTAGCTTTATCATTATATTAATTAATAATGACTA CCAAGTTTCTGTGTAGTTTGAATTCAGCTTATATCAGAAAATAGTTTTACTTCTTCTTTGGTAGTATCATGCTTTTACAT GTTATTTATGAGTACGTTGCTCCTCTCTACTTTGCAAATAGTCATTATCAATTGATTAATAGAAAAGAAGATATTATTGA ATAAGTATAGGTCTAAATGTATGAATCTCTCTTCTTTTGTGCTCTAAAAATTAAATCTCCACAATCAATTCTCTATCTTT TATATTATTAAAAAAGATGTGATGGTGAATCAGAGTTAAGCAAGATATTCATGCCTTGCCTCTTGATCCCTCTAGAAATC TATTTACTTCAACCATTATGTTTTGATTGTATAGACTATTGAGGCTGTTTTGCATGAATAGTGAACTCTTCCCTTTTACG TTGCTGAAGTTTTGGCTATGGAATTCCATTAACATTTTGCTCTTTATCCAGCTTCCATATTATAAAAAATGCAAGCAAAC GCAAAAACGTGATTATGAGAAGTGGAAATCTTCTGTGCTCGAGTCCAATAAACAAAACAAGACAGAAGGTATTGAGACAG CTCTTGATTTTTCTGATTCATGAAATGAGCCTCAGATCATTTAACCTTATTTTTTCTTCCCTTTTTTCAGTGCTTTGCAA GCGTACTACCCAGACTAGCCTTAGCCTTAACTTTCTCAAGAAAGCCCCTGAGAGTCAGAAGTTGGAAGCTACATGAGATG TTATTGCTTCATTTTGTGATGAATGATTATTTTGGAGGAAACTTAGTACATTATGCAAGTGATGAAGGAGGATGGCAAAT ATTGTAGCAGAAGATAATTGCATTAGTTGATTTATCTTACCAGCCTTCTCAATTTTGTTAATTTTACCAAGAGCATTTGT TCACAGCAAGAACTCTGTACAGACTGGCATATTTATATCTTCCATTGGTATTTGGTTTCAAATTGGATCTCAGTACAGTT ACAATTATGCATTTACATACAAGACAGTAAATGTATACATGTATATTTTTCTTCGTATATATTCAGTACTTTCTACTTGA CAGTAGGAGAC
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0304700.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGCTTTCATCGTTAGCCAAGAAGCTTGGACTCACCGATTCCAAACTCGTCATCCGAAAAGCCGCCGAACTCCGCCG CCTCGCCGACGTCCAGTTCGATTCCTCCATCATCGGCGTTGGTGAGATCGCTAAAGCGGTTATCTGTTTGGAAATCGCCG CCACCAAGCTCGGTGTCCTCTTCGATCGATCCTCTGCGGTTAGGCTCAGTGGAATGTCACAAGGAGCTTACATCAGATCC TACAATTCTCTCCACAACGGGATCGGTGTCAAGATGAGGCTTGATGTAAGAGAACTTGCAATTCAGTTTGGTTGCGTTCG AATTATCCCTATGGTTCGTGACGGTCTCAAGAGTTATAAGGAGCGTTTTCTTGCATCGTTGCCGCCCTCTCGACGTGCCA GCGCTGATTTTACTCGGCCGGTGTTCACTGCTGTTGCTTTTTATCTATGTGCCAAAAAACATAAGCTGAAAGTTGACAAG ATTAAGCTTATTGAACTATGCGGTACATCTGAATCTGAATTTTCTAGTGTTTCTACTTCTATGAAGGATTTGTGCCATGA TGTTTTTGGGATTGCTAAGGAAAAGAAAGATCCTAGAGAAGTAACCTCAAATCGAGAATTGCTTGATGTGTTACCAAGTA AAAGGAAAGCTGAGGATGGTGGTTATGTGTCTGATGATGGGGCTGAGCTTCCATATTATAAAAAATGCAAGCAAACGCAA AAACGTGATTATGAGAAGTGGAAATCTTCTGTGCTCGAGTCCAATAAACAAAACAAGACAGAAGTGCTTTGCAAGCGTAC TACCCAGACTAGCCTTAGCCTTAACTTTCTCAAGAAAGCCCCTGAGAGTCAGAAGTTGGAAGCTACATGA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0304700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MELSSLAKKLGLTDSKLVIRKAAELRRLADVQFDSSIIGVGEIAKAVICLEIAATKLGVLFDRSSAVRLSGMSQGAYIRS YNSLHNGIGVKMRLDVRELAIQFGCVRIIPMVRDGLKSYKERFLASLPPSRRASADFTRPVFTAVAFYLCAKKHKLKVDK IKLIELCGTSESEFSSVSTSMKDLCHDVFGIAKEKKDPREVTSNRELLDVLPSKRKAEDGGYVSDDGAELPYYKKCKQTQ KRDYEKWKSSVLESNKQNKTEVLCKRTTQTSLSLNFLKKAPESQKLEAT
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR13394
1 269 269 7.1E-108
IPR020529
Pfam
PF05460
3 90 88 6.7E-15
IPR008721
Gene3D
G3DSA:1.10.472.10
92 188 97 1.6E-27 –
CDD
cd11583
93 188 96 2.14198E-29 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0005664
Cellular component Nuclear origin of replication recognition complex A multisubunit complex that is located at the replication origins of a chromosome in the nucleus.
Subterm of
GO:0006260
Biological process DNA replication The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0304700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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