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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0305700 |
| Transcript ID | LotjaGi2g1v0305700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | TCP family transcription factor; TAIR: AT3G47620.1 TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14; Swiss-Prot: sp|Q93Z00|TCP14_ARATH Transcription factor TCP14; TrEMBL-Plants: tr|V7CJV7|V7CJV7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0305700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:77903669..77908916) extracted from Lotus japonicus Gifu genome v1.2.
TATTTATGTTGCTTAAAGCTTGCCCTCCGCTCCCTTATCCTCTATCATTCATTCATTCCCTTTCTCTCTCTCTCTCTCTC TCCTGAGACAAAACAACTCAGCAGCTGCAAGCTCCCATCTGAATGGAATTTCATGCTCCACACAACACAACACAAACACA GAAAAAGCTAGACCCACTAGTCCACTAAAGTGAGGGTCACCTCATCACTTCACTTCCACCCCCACAAACACACACACACA CAACACAAAGATAGAGAGATAGAAGCAATTTGCAAATCCAAACCCAAACAAAAAAAAACACACACATCTAGTGGCAGTAC TACTACTACTACATCTATAGCTTCTAGCTAGCAAAAGAAAAGATTTTTTTATTTTTATTTTTATTTTTTAAATAAAGTCC ACCATTTTTTTCTTAAAAAAAAGGTGTGCTATCTTATAGAGAAGTTTCATTATATGAGATAACTTGATCATGGAATTGGA AGCTGCTGATCATCATCATCATCATCATCAAAATGGGATCCGAACCAGACCCAATTTCCCTCTTCAGCTCTTAGAGAAAA CAGACCTTGATCTAGAAGATGTCTCTGAACAACAACAACAACAACCTTGTTCCACAACAGCACACGACGGTGGTGGAGAC ATCGTGGCCACGGCAGACCAGGCCAAGAAGCAGCCACCCAAGCGGGCCTCCACCAAGGACCGCCACACCAAGGTGGACGG CCGCGGCCGCCGGATCCGCATGCCTGCTGCCTGCGCCGCCAGGGTGTTCCAGCTGACGCGTGAGCTAGGACACAAGTCCG ACGGTGAGACCATCGAGTGGCTCCTCCAGCAGGCTGAGCCAGCAGTCATCGCCGCCACCGGGACTGGGACCATTCCTGCC AACTTCACCTCGCTCAACATCTCACTCCGCAGCTCCGGCTCCTCCATGTCGGCGCCGTCACACTACTTCCGTGGCAACTA CTTCAGCCCCACCACCTTCTCCACCGCCGCCGCTTCTCAGCTTAGGAGCCGCGCCGAGTGGGACAGAAACATGAACATGA GCATGAGCAGTAACAACATGAATGAAGATTCTAGAAGGGTAACTATGTTGGAGAACCCTTCTTCTTCTCTCTCGTCGATT ATGAATTTCAACTCTGTTAGCAACGTGAATGCCATGCTACAAGCGAAGCACGAGCTCCGGGAAGAGGAAGCCGCCGCCTC CGGCAGTGGCGGAGGATTTGAGTTGGTGACCGCGGATTCTGACGGAAGCTTGGGGAGAAAGAGGAGGCCGGAGCAAGAAC TTTCACAGATGGGAAGTTACTTGTTACAATCCAACGTGGGGTCACTTCCGGCGAGCCACGCTTCCAATACGGCAGCGTTT TGGATGGTGGCGGGTAACGGCGGCAACCAAGGCGTGAGCGGTGGTGGTGGTGCTAGCAATGGCGATCCCATTTGGGCAAT TCCATCAGTTGGGAATAGTGGGGTGTATAGAGGAGCCGTCCCCGCCGCTGCCGGAGGGATTCATTTCATGAATTTTGCTT CTCCGATGATGCCTTTTATGCCTGGAAGTCAATTAGGTTCAAGCCTAATGGGTAACGGTGGTGGCGGCAGCGGTGGTAGT GCATTTATGGGTGAAAGTAACTTAGGCATGCTTTCAGCCCTTAATGGCTATAGGCAGAATCCGGCCAACGGCCTTCCGGA GTCTCCGACCAGTGCCGGGCAACATCACGGTGGAGGAGGAGGAGATGATGGACATGATGACTCAACCAGTCAACATCCCT GAGGATCAAGTAATTACAAATGTATGATCTGATGCTAGCTTCTTAATTTTTCTTTTAATTACTCTACTATATAAATTAGC TAGTGTTCTTATTAATGGTTTCTAAATATTATAATTATATACATAATTATATATGCTATGTCAATTTGCAAAAACATGCA GCCTCAAGTTTGATTCCTTTGATACATGGAGTTCAATATTCGATTTTTGACCTTAATTTGGTGTGATTTTCCTAGGATCA TTTGTTAGGGTTTGAGAAGCTAAGAAGCATATAATATAGGTATATGTTTACATAGTTATTCCAATATATTTGATATGCTA GCTATGATCAAAGGTGTTTAGAATAGTGTTTAGTTTCCTATTAATCAAATCTTGCTTTAATGATCTGGGATTTTGCTTGG CATTGCACTATCACCTGTGATCATTTTGTTTGGTATAATTTACTAATTTTATAAATTTGATAGAGACGTACATGCTCTAT ATATTGGCTCTTGTATGAATAAACTAGTCTGGCTAATTTCAGAGAAAAAGTGGGTAGGTTTAACAAACGCATTATTAGTA TTATTATTGCCGTGGGGAAAAATGAATAAAGTAGCAAGCAATTTGATTTCTTATACTAGCTAGTGCATTGAGTTGAAAAG AAGATGCTGGTCTCTTCTGGTGAGTACTGCAAACACTGTCACATGCATGATGCATCCCTTATTGCTGCTGCAGCTATGAA TTATGTATATGTGTACTATATATATAGCTAGGGACCAATATCTACATGATAAATGCTTTTGTATGAAAGTGCCCTCTCTC CTAAATCATGATCTGGCTATTGAAGTGGCTCTTAAACTCAGGTGGTGACCAGTGTTATTGGCCTTTGATCTGCCTAAAAA TGCATACTCAGTCACTGGCTGAACACTGTTCAGCACCTTCATTCTTTCTCTTACCCAGCATAGAAGATCATAGATGCTAG CTAGCTTGTGGCATCATAGCTGGAGTTTATTTATTACAAGTGTATAGCACGTTGCAGGCATTAGCTAGTAGTAATCATCC ACTATAGGCTATGTATTCACTCACGGATCACATTAATTTGTACCCTTTGCCTTGAACTGTTGTTTTCACTAATTAAAAGG CTAGCTATACCAAAATTAGGTCTTCAGAGATCACAAACTAATCCTGTTTATGAGATCAGTTTCAGCCCCACATTATTATT TTCTAGTTTCTTTTTTGCTAGCAGCATATTTAATTTGTATCTACAATTGGTAGATAATTAAATTTCTTAAACATTTAATT GAGGGTTCGATTCATAGAAGGTGTGTAAGGAAAAATATTTGTTAAGAGAGGTCTACCCACTTAATACGAGTCTAACTTTG AGATGATTAGTCCCATCACTATCGGATGTAGAAATGACTTTACAATTTCTTTGATATAATTTGAGTTTGAGATAGTAAAA TATCAACACACTTCACATAAATGCAGTGGTATTAATCATCGTTAATCAATTTAGATGTACAGAGCAAAACAGCATTGTGG AGCCTAATTTAATTAATGCTTTTTCCATAAACGTTCAACTATTTGGATTGAATATTGTGTCAATATATACAAATGTGTTT GGTCTGGTTCTTACTAGAATTTCTTCATTAGTTCTAAAGTTATTTGAAAGTATACAGTGTAAGTTCATGTTGAGTTTATG TCAAATGGTGACGTCGAAATGATATCATCTCCTTCTCCAAAAAAAAATTATGTAAATAAAAAATGAAATCATATATAATT TTGGAGTATTGTGCTTCTATACAATAACAAATAACAAATTATCTTGTTGGTTATCCTTATATTGATTCTTCATCAATAAT CATGGACGACATAGCATGTGAATATATTTCTCCATTTTCATCTTCTATGAGCATATATACGGTTATTGTAAATGAAAAAT TTATTAACGAAAGATTATTGTTTGCATATATACAAAATTAATAATAGGACCTCAATTTGTCCATTCCGTTATTGTAGAAA GAGATTTATGTGCACGATCATGCATTAGTATAAGCAGTAAGCAGGGCATGGCGCAGTAGTAGGTGAGAAGCTAGGTAGGT GTGCAGACTGGGTACCTTGTTGAGCAGTGTTATCAGACTCGGACCGGTGATCGACTCGGTCGAGGTACTGGGTCAATGAG TCAATGGTTCAATCACTGGGTCACTGGTTGAACCGTTTAACTCGGTCGATACTAAAAAAAATTCATAATACCATAATAAA ATGTCACAAAATACCATACACACAAAAGCAATAAGGAATTTTTTACCACAACAAAATGTCACAACTCACAAATAACTAAA ATAAGTTTTAAACATCATCAAACAACATCGATTTTACGCTTTAATCACAACAAAAAGCGTATAAACAAGTTTAAAACAGA ATCCACAACTAAGATCTTGTACATCATAAGCTAACAAATGATATATACACATGAAACAACTTGTATATAATCCAGTTTCT GATTCATGCTAGCTAAAAGGATTATCAATTTTTCAATTTTTTACAACACCAAAGCTTGTTATTCATATTCTTTAATTTGT CCTCAAAGAAACGACAAGAAGACTTTGCAAAGAAATTATATATAACAACTTGACTCATTCTATATTAAAAAATTAAAAGA ATTAATAATACTAACTAACATTAATTAATAACTTCATAATAAAAACACACAAATAATTATTTTAACTTATTGTTAAATAA CGTTTTTGAAACAATTGTTAAATAACGTTAAGAAATAGTTATTGTTAAATTACTTAAATATATATATATAAGTAATTATT ATAATGGTTGGGTTGTGTTTTAGTTATTTTGTGTAACACTAATTTCGTTCAAAAAAAAAACTAATGTTTACTTGTCAAAG ATTTGTATAGTATTATTTTTGTTTATATAAATATAATTAATTGTAACCATTATATCAAAACACTTGTCTAGCCTAGTGGT AAGGTTCACAGCAATGAATCTTGAGGGAATGGGTTCGAATCCAAGCTAGACTCTTTTTCAAATTTTTTTCGCAACTAATA AATGCTAAGAAAAAAAAGGGCTCTGTTAAAAAAAAAATACAGGGGAAAAAAAAGGCCCGTTAATACAGGGAAAAAAAAGG CCCGTTCTAAGAAAAAAAAGGTAAAAAAAATACAGGCCCGTTCTAAGAAAAAAAAAGGTGCTCTGTTAAAAAAAAGGCCG GTTCAACCGAGACCGGCCGAGTCTCCGGTTTAATCATAAAAACCAGCCGAGTTGACCGGTTCACACCGGGCGGCTTGCAT GGCCGATCCAATGCTCGGCTCAAACCGGTCTAGGGTCCGATTCCCGGTTCAACCGGTCGAATCGGCCGGTTCGAGCCGAG TTTTATAACACTGTTGTTGAGTAAACGATGGGTCTCCACGAAAAAGAAAAAGGTTTATGCATGTACGAACTAAAAAACAA AGAAATATATAGGTATAGCCGTATAGGCTATGAGTGATGAGTCCCCAA
CDS sequence (LotjaGi2g1v0305700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAATTGGAAGCTGCTGATCATCATCATCATCATCATCAAAATGGGATCCGAACCAGACCCAATTTCCCTCTTCAGCT CTTAGAGAAAACAGACCTTGATCTAGAAGATGTCTCTGAACAACAACAACAACAACCTTGTTCCACAACAGCACACGACG GTGGTGGAGACATCGTGGCCACGGCAGACCAGGCCAAGAAGCAGCCACCCAAGCGGGCCTCCACCAAGGACCGCCACACC AAGGTGGACGGCCGCGGCCGCCGGATCCGCATGCCTGCTGCCTGCGCCGCCAGGGTGTTCCAGCTGACGCGTGAGCTAGG ACACAAGTCCGACGGTGAGACCATCGAGTGGCTCCTCCAGCAGGCTGAGCCAGCAGTCATCGCCGCCACCGGGACTGGGA CCATTCCTGCCAACTTCACCTCGCTCAACATCTCACTCCGCAGCTCCGGCTCCTCCATGTCGGCGCCGTCACACTACTTC CGTGGCAACTACTTCAGCCCCACCACCTTCTCCACCGCCGCCGCTTCTCAGCTTAGGAGCCGCGCCGAGTGGGACAGAAA CATGAACATGAGCATGAGCAGTAACAACATGAATGAAGATTCTAGAAGGGTAACTATGTTGGAGAACCCTTCTTCTTCTC TCTCGTCGATTATGAATTTCAACTCTGTTAGCAACGTGAATGCCATGCTACAAGCGAAGCACGAGCTCCGGGAAGAGGAA GCCGCCGCCTCCGGCAGTGGCGGAGGATTTGAGTTGGTGACCGCGGATTCTGACGGAAGCTTGGGGAGAAAGAGGAGGCC GGAGCAAGAACTTTCACAGATGGGAAGTTACTTGTTACAATCCAACGTGGGGTCACTTCCGGCGAGCCACGCTTCCAATA CGGCAGCGTTTTGGATGGTGGCGGGTAACGGCGGCAACCAAGGCGTGAGCGGTGGTGGTGGTGCTAGCAATGGCGATCCC ATTTGGGCAATTCCATCAGTTGGGAATAGTGGGGTGTATAGAGGAGCCGTCCCCGCCGCTGCCGGAGGGATTCATTTCAT GAATTTTGCTTCTCCGATGATGCCTTTTATGCCTGGAAGTCAATTAGGTTCAAGCCTAATGGGTAACGGTGGTGGCGGCA GCGGTGGTAGTGCATTTATGGGTGAAAGTAACTTAGGCATGCTTTCAGCCCTTAATGGCTATAGGCAGAATCCGGCCAAC GGCCTTCCGGAGTCTCCGACCAGTGCCGGGCAACATCACGGTGGAGGAGGAGGAGATGATGGACATGATGACTCAACCAG TCAACATCCCTGA
Protein sequence (LotjaGi2g1v0305700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MELEAADHHHHHHQNGIRTRPNFPLQLLEKTDLDLEDVSEQQQQQPCSTTAHDGGGDIVATADQAKKQPPKRASTKDRHT KVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSAPSHYF RGNYFSPTTFSTAAASQLRSRAEWDRNMNMSMSSNNMNEDSRRVTMLENPSSSLSSIMNFNSVSNVNAMLQAKHELREEE AAASGSGGGFELVTADSDGSLGRKRRPEQELSQMGSYLLQSNVGSLPASHASNTAAFWMVAGNGGNQGVSGGGGASNGDP IWAIPSVGNSGVYRGAVPAAAGGIHFMNFASPMMPFMPGSQLGSSLMGNGGGGSGGSAFMGESNLGMLSALNGYRQNPAN GLPESPTSAGQHHGGGGGDDGHDDSTSQHP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 23 | 23 | - | – | |
| PANTHER | 14 | 424 | 411 | 2.0E-130 | ||
| PANTHER | 14 | 424 | 411 | 2.0E-130 | – | |
| MobiDBLite | 36 | 83 | 48 | - | – | |
| MobiDBLite | 69 | 83 | 15 | - | – | |
| Pfam | 74 | 237 | 164 | 9.4E-40 | ||
| ProSiteProfiles | 75 | 129 | 55 | 27.683 | ||
| MobiDBLite | 242 | 272 | 31 | - | – | |
| MobiDBLite | 392 | 430 | 39 | - | – | |
| MobiDBLite | 392 | 407 | 16 | - | – | |
| MobiDBLite | 416 | 430 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. |
Expression pattern of LotjaGi2g1v0305700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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