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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0308400 |
| Transcript ID | LotjaGi2g1v0308400.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Hypersensitive-induced response protein 1; TAIR: AT5G62740.1 SPFH/Band 7/PHB domain-containing membrane-associated protein family; Swiss-Prot: sp|Q9FM19|HIR1_ARATH Hypersensitive-induced response protein 1; TrEMBL-Plants: tr|Q5KSB6|Q5KSB6_LOTJA Hypersensitive-induced response protein; Found in the gene: LotjaGi2g1v0308400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:78262019..78264337) extracted from Lotus japonicus Gifu genome v1.2.
ATAAATACCCTTCTTCTCTTCTTCTTCCCCATTCTCATTCATCATCATCATCTCTCAAATTTCCTTCATCTCTTCTCTGT GAAGCTTCCATGGGGCAGACATTGGGTTGTGTGCAGGTTGACCAGTCAAGCGTGGCAATCAAGGAGGTTTTCGGAAAGTA CGATGATGTTCTTCAGCCTGGTTGCCACTGTGTTCCCTGGTGTATTGGTAGTCAGATTTCTGGTTCCCTTTCTCTGCGTG TGAAGCAGCTTGATGTTCGTTGTGAAACCAAAACCAAGGTTTAGTTTAGTTTCTTTCACTCTTCAAATTGATTCCATTCT TTGTTGTTCTTGATTATCAAAATGATGTTGTTTTATTGCACCCCATTATTAGGACAATGTTTTTGTTACTGTGGTTGCTT CAATCCAGTATCGAGCACTGGCAGATAAGGCTGTGGATGCTTACTACAAGCTCAGTGATACCAAGGCACAGATTCAAGCT TATGTTTTTGATGGTGGGTCATTTCATTTGTCAATCTTCTTAGTAGTGTGTGTTTGCATTTAACAAAATTGATTATGGGT AGAATTGATTCTACTGAATTGCTTAGGGTAAACATGAGCTAAAATTATGTGATTTATGTCTTGATACCTTCATGAAAAAA GTGTTTTTTTAAGGGTAAAGTTATGAAAATCAGCTGCAAAATCTCAAAATTACTTATGTTTAACGCAAGAGGAACTATTT GACTAGTATAATTGATTATGCTTTCGTGGTACACCCAAATATCATTACCCGGTAGAATTTCACAGAATTGATTATGCTTT CCAAACACGCAACTAGAAAGAGTTCGGGTTTGTGAGTGTGAGCACTTGTAGTGCATTTTCAGTTGATTTTGGGTAGAATT GATTCTACTAAATTGCTTAGGGTAAATATGAGCTGAAATGATGCGATTTATTATGAGAAAAGTGTTTTTTTAAGGGTAAT GTTATGAAATTCAGTTGAGGAACTATTTGTTGTGACTAGTAGAATTGATTCTGTGGAATTGATTATGATTTTTTTCTGAT ACACCCAAGTATCATTTTAACTAGTTAGAATTGATTTTAGCCCAGTAGAGTTTTACAGAATTGATTATGTTTTCCAAACA TGCTATTAGAAAGAATTTGGGTTTGTGTGAGAGCTTGCAGTGCATTTTTCGGATTGAGAAACTGAGTTGTTTCTGTTGCT CTTTCAGTTATCAGGGCAAGTGTTCCGAAGATGGAGCTGGATTCTGCTTTTGAGCAGAAGAATGAAATTGCAAAGGCAGT TGAGGAAGAACTTGAAAAGGTCTTATTGCTTTTTTATGTTTATTTTTTTGTGTTGTGAATTAAGATAGTAGGAGTAGTGC ATCTATAATTTGTTTTCTTTCACTTTCTAGGCTATGTCAGCTTATGGCTATGAGATAGTTCAGACTCTTATTGTGGATAT TGAACCAGATGAGCGTGTCAAGAAAGCCATGAATGAGATCAATGCTGGTATGTATGTTTTCTAGGTGTGTGTATCTTTAA TTTATCTTCTACTAGCATGCAAACAATATCATTATTAATTCAGTTTTCTGCAGAGATTTTCTAGCTGAGAGTTCTTAATT TGAGAATTTTTTCGATTCCTTATCACTATTATATGATTACTTAGAGCTGTATTACCTTCATAACAAGTGCTACCCTATAC ATATAACATAGGAGACAAAAGCTTTGACTTTTCAGGGAGCTAACAAGTTTGAATAGTGAATTATTTTTCATCATAGAATA CTTACTGAATCCCCAATTTCATTAGGGGAACAATTTTTACAAGTTGACCAGAATAATGTGTCATTGTTGATGCCACCTCA AAGCACTCGCTTTCTTGAACTACTGACAACATTTTTAGCTAAAAAATTGTCTTGTTTGAGATGAAATTTGTTTAATGTTT TCTTTCCCCTGTTTTGTCTTTCAACCTTCACAAATAGCTGCAAGATTGAGGGTGGCTACAAAGGAGAAAGCTGAAGCAGA GAAGATACTGCAGATTAAGCGGGCAGAAGGTGATGCTGAATCAAAGTATCTTGCAGGGCTTGGAATAGCTCGTCAGCGCC AAGCCATAGTAGATGGGCTGAGGGACAGTGTGCTGGCTTTCTCTGAGAATGTGCCAGGCACATCATCAAAGGATATCATG GACATGGTTCTGGTGACCCAATATTTTGACACCATGAAGGAAATTGGTGCATCTGCAAAATCCAATGCTGTTTTCATTCC ACATGGACCTGGTGCTGTGAAAGATATTACTTCACAAATTAGGGATGGTCTTCTCCAAGGAAATGCAACAGAGTCTTAA
CDS sequence (LotjaGi2g1v0308400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGCAGACATTGGGTTGTGTGCAGGTTGACCAGTCAAGCGTGGCAATCAAGGAGGTTTTCGGAAAGTACGATGATGT TCTTCAGCCTGGTTGCCACTGTGTTCCCTGGTGTATTGGTAGTCAGATTTCTGGTTCCCTTTCTCTGCGTGTGAAGCAGC TTGATGTTCGTTGTGAAACCAAAACCAAGGACAATGTTTTTGTTACTGTGGTTGCTTCAATCCAGTATCGAGCACTGGCA GATAAGGCTGTGGATGCTTACTACAAGCTCAGTGATACCAAGGCACAGATTCAAGCTTATGTTTTTGATGTTATCAGGGC AAGTGTTCCGAAGATGGAGCTGGATTCTGCTTTTGAGCAGAAGAATGAAATTGCAAAGGCAGTTGAGGAAGAACTTGAAA AGGCTATGTCAGCTTATGGCTATGAGATAGTTCAGACTCTTATTGTGGATATTGAACCAGATGAGCGTGTCAAGAAAGCC ATGAATGAGATCAATGCTGCTGCAAGATTGAGGGTGGCTACAAAGGAGAAAGCTGAAGCAGAGAAGATACTGCAGATTAA GCGGGCAGAAGGTGATGCTGAATCAAAGTATCTTGCAGGGCTTGGAATAGCTCGTCAGCGCCAAGCCATAGTAGATGGGC TGAGGGACAGTGTGCTGGCTTTCTCTGAGAATGTGCCAGGCACATCATCAAAGGATATCATGGACATGGTTCTGGTGACC CAATATTTTGACACCATGAAGGAAATTGGTGCATCTGCAAAATCCAATGCTGTTTTCATTCCACATGGACCTGGTGCTGT GAAAGATATTACTTCACAAATTAGGGATGGTCTTCTCCAAGGAAATGCAACAGAGTCTTAA
Protein sequence (LotjaGi2g1v0308400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGQTLGCVQVDQSSVAIKEVFGKYDDVLQPGCHCVPWCIGSQISGSLSLRVKQLDVRCETKTKDNVFVTVVASIQYRALA DKAVDAYYKLSDTKAQIQAYVFDVIRASVPKMELDSAFEQKNEIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDERVKKA MNEINAAARLRVATKEKAEAEKILQIKRAEGDAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDIMDMVLVT QYFDTMKEIGASAKSNAVFIPHGPGAVKDITSQIRDGLLQGNATES
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 282 | 282 | 5.2E-178 | – | |
| PANTHER | 1 | 282 | 282 | 5.2E-178 | – | |
| SMART | 5 | 165 | 161 | 2.1E-33 | ||
| Pfam | 9 | 182 | 174 | 1.9E-27 | ||
| CDD | 10 | 278 | 269 | 4.68266E-162 | – | |
| Gene3D | 45 | 167 | 123 | 1.3E-15 | – | |
| SUPERFAMILY | 47 | 171 | 125 | 1.09E-24 | ||
| Coils | 118 | 138 | 21 | - | – | |
| Coils | 170 | 190 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0308400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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