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LotjaGi2g1v0314300.1

Overview

Field Value
Gene ID LotjaGi2g1v0314300
Transcript ID LotjaGi2g1v0314300.1
Lotus japonicus genome version Gifu v1.2
Description RAN GTPase-activating 2-like protein; TAIR: AT1G10510.1 RNI-like superfamily protein; Swiss-Prot: sp|Q7RTR2|NLRC3_HUMAN Protein NLRC3; TrEMBL-Plants: tr|G7K465|G7K465_MEDTR LRR ribonuclease inhibitor domain protein; Found in the gene: LotjaGi2g1v0314300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:78951055..78958934) extracted from Lotus japonicus Gifu genome v1.2.

CACACAGCGAGCTTGCAGTCACACTTGATAGACGATGACGAAACAGAAGAGAGTAGAACCAAACCTTGGTCGCGCTCGCT TCCTTCTCTAGCATCCACAACTCTCTCTATCTCCGGCGAAACTGGCATGCCGGCGACGCCGTTCAATTCGTGATTGCTCC GTCTTCTCTCCGCCGTTCTATGCTCATCCATTGCTCATAAGCCATGTCCCTAACCTTCACTTCCACACTCTCTCTCTATC CTCACCGCCAAGTAAGTAACCAACTAACTAACCACCTTCTCCTCTCTCTCTCTCTCTTCAAACCCTAACGGTTTTTCTCT TTGGCTGCAGGCTCGCCTCCGGTACCGGCGGTTACAACCGTCGCCGCTATCTTCCGCAGAATTCGTCTGGCTTCCGTCTT TGAAGAGTCGGAGACCGCGTGTATTGAGAGCGCCATCAAGATGCTTTGTAGTTAGGGCATCTGCCGGCATCGGAGGAGGT ACTCACAGAGTGTATCGTCAGTCTCAGGCCACCGCGTCTCCGTCTATTGCCACCGTGAAACAGATTGCAAACACTGTTAC TCCCTTTGGCATATTCTTCGCACTCACTTTTGGTATCCACTGCACAATTCTGCTTTCTTGTTCTCATTCTGTATTTTTTT AGAATTCATGATTATGTAGTGTGAGTAGCGTTTCACTGCTAGTAATGTGTGTGTGCTTGTTGCAATCATGCTCATTTTGT TAAGTTTCATAATGGTGGTGATACTAATTTGTTTTCAGCTTACAGTTATCTGGAAAGTAGTGGAGAAGCTTCTTGTTCCA GCTCCAAAGCAATCTAAATCTTCAACCGCGGAAAGTCAACCGGCTTCACAAGGATTTAAATGGTCTGCTGGTACAAATCT GTTGTCGAGGCTCGGGGCGAAGATTGAGAGACAATCTAAACAGAAACTCAATGAGTTTGCTCGAGAATTGAGGTCATTTT CAAGTATTGATATGTCAGGTATGGTGGCTGGATTGATGTTTAAAAAAGATATTTATGTTTATCTGACATGCTTCTAACTC ATGAAATGAAGTTTCTTTGTAGAAATTTCTCTAAATAATGTTGATCCATACATATATGTTGATTTCGCAATCAAATTAAT TCAAGTCATAGCATAGTTAATTAATCGATTGCAAACTTGTCAGAGAATGCTTTCTTTATTGCTGTTAACTCTATTGACTT GATCAGTTTAAACTGTGGGAGCGAAGAAAGCATGGACATTCTGAAATAAGTAGCTGTGTCGGTCCAAACATGTATTTTTG TTAAGCACTTCATAGAAAGTTCTAATTGTCTTTTCCAATTTTTTACTTTTATTTTTTCAACTTACTTATCAAGATGGAAA TACAACAACAATTAGATTAAGATTAATGATAGCATTTCATTATGTCTACAATGACAATTCTAACTTCCAAAAATATCAAT GCTCTTTGGATTTAAGATTTATGCCTTATATTTATTTTAAGTCATGTTGGGTCCTGAAGCTTTTCAATTTGTCATGTCCC ATGTCCGTGTTGTCTCACATCCGTGTCCTGTTTGTCTCATATCCTTGTCCCATGTCATATTCATGTTTTATAGGGGGGTA ATATTGAAACAAATAGATAAATAAAAAGAAAAATTAATTTGTCATAATTTTATGTGGCAGGGCGCAACTTTGGAGATGAA GGATTGTTCTTTCTTGCTGAGAGCTTGGCGTTCAACCAGGTAACGACTATCCTTCATCTGTCATTGTTTTCATATTTTCT TGTGTATTTATTGGTTATAGATGATTAAATGTGCTGGTAGTTTTGAAGTTGTCATTAAATTTTTTGTTGTGATGTTGTTA CCTATGCAGGCATACACCTAAATTAGTTAAGTATTCATTGCTACAGTTACACGAGGAAGAAATCTTTTAAATTACTGAAT CAATTTTAACATCTTTGAAGCCAAAAAATAAGTGTCACTTTAGCTGATGTAACTAGCTTTTTTCTCTTTATATTTCATGA AATTAATGCAACAAAAGATTCATTTTGGTGTTATCTCTGTGTTTATTTGCTAAATATATTTGGTTATATGTAGACTGCAG AGGAAGTGAGTTTTGCTGCAAATGGAATAACAGCAGCTGGATTGAAAGCTTTTGATGGTGTTCTTCAATCGAACATGACA TTGAAGATACTTGATCTTTCAGGAAACCCTGTTGGAGATGAAGGAGCCAAGGTCATTTCTAAGTTTTTAGATTTATTACA TCTCTTAATTTGGGATAATGGTGTGAAAAGGACCTAATAATACTTTTTATGGATGATAAAAGTAATGTGTATGCCTACAC TTTGTCTACAACCAACCATCCTAAAAGTGTAAGATATTAAGTGAAAACTCAAGAAGGGCTTGTATCTAAAATGCCTCATT CTAGCTTATGCAAAAGCCATTTGGGCTTTAAAGTGAGACAATGTATATGCCCGCAATACCTCGTGTTGGTCTGTTGGATT TCAACTTTTGTCTAAAACAACGACAAGCAAATCCTAATCACTTAGTGAAGAGGCTTTGGTACCATGTTGAAATTATAAAG TTTTAGGTGAAGGATATTTGACGCACATATTTTCCTTTTTATGATGCCGATATCATCATTGCACAGTAAATTGAGATTGA CACATGTTTCCACAACCTAGTCTCAAGCCATGGCTAGGCTAAGTTAACCAAAGCATCACTTAACTTGGCAAGCAATACAA ATCTCTTCTAGTGTCTCTCTTGAGTCCCCTGACCAAGCATACGCTTGATTACCCCCATTCCTCAAATAAATACTCTTTGA TGGATACCCTGTTGCTGGGTTTAATGTGCCTCTAGTTCGGGTGTAATAAAGAAAGAAGAGGGTCAGAAATAATAAAGGCA GGATGGGAGTTAAGGTGCAGGACACTGTTAAGGACTATTGAAGAGCTTAATTGAATGGACAGGTGGCAACAAATTGGTGA TGAAGGGAGTATGGAGAACATGGGGAGTGGGGACTAAAATCACGCATTCCGGGAACTATAGAGATAAAAAAATGTAATTA ATCCTTTTCTTTACATTGTCAGTGTCAATTATTTTATTAGAGCTCGGTTGTTTAATAGGTTAGACGAATTTAAGTTACTA TGGATCCAGTGGTTAAATTAAACCCATTGTGTGTCTTTGTTATAAGTAATTGCGTTTACCGTTCTCTCAAGTGAAGATGA AGGGTACTGTGGTTCTTTAAACTCGACATGTATAGGTTTATTTGCTTACTGTTTGAGTCTGTGTGATTGTCCTCAATCCT AGATCAAGCATACATAGGATGACAGGAATAGAAATCATTTCATGTTCCTCAGTTGACACTTTATTTGCTAAAATATCTTC ATTTCTCTATGTTTTTAAGCATCTTGGACTAAAGATCAAGTGTCTTGTACTGTTGCTTACTTAACTAACCATGATAAATT GATAATTATTAGAGTTATATGTTTATTGCCACTTCCGCCCCTCAAAGATATAAAAGAAAATATGTTGGCAAGTATTGCTG ATCATTGTCATACAGTCTGGTTTTAACATTGTGTTGATATCTTTGTTCACAGAGCTTATGTGACATATTGGTAAATAACT CCAGCATTGAGAAGCTCCGGCTAAACAGTGCTGACTTGGGGGATGAGGTAAGCTTGGTGATAAGTATTATTCGTGAAATG CCTCCCACATTGCACTGAGAAATCCTTACTAAGTTATGCAGGGCGCGAAAGCTATTGCAGAAATGTTGAAGAAAAATTCA AGTTTGCGGGTTCTTGAACTTAACAACAACATGATTGAATATTCTGTAAGCGATTTACTAGAGCTTATTCTAAGACTTTA GAACCAGGAGTATCCAAATCTGATTTTAATTTGTTTCTTTGAAATGGAGGTAGGGATTTTCAAGTCTGGCTGGCGCACTT ATTGAGAATAGCAGCATAAGAAATATACATCTCAAGTAAGTAAGAATATTCATTTTATCTCTTCTCCCGGAAATTTTCCT CCTCGAATATTCCCTGTTGGAAATTCTGAGGGAATGAAATTTTATTTGTGCTAATGATGCTTTTGGTATTCTAAGGAACT TTTTCCTGAATAAAATTTTAACAGCTCATTACTTACTCTTTTCCTTCTTCGTATTGTACATCATTACTACTCAAGTGGCA ATTATGGTGGTGCATTGGGGGCTAATGCATTGGCCAAAGCACTTGATGGCAACAAGTCTTTAAGGGTACTACTCTTACTT ATTTTCTTTCTGATGAAATACCCTTACACCCGCATTCTTCATTAGTCCTGGGTTTAACTTTCACAATAGAAATTTTGCCC ATAACATGCGCCTTGTAGCACAAAATGATATTATGAATTTCCTGACAGAACATCTGAAATTCCAGATCATGCTTGTAAGA AGTTGAGCGCTAATCCTTCAATGCATAATCTCTTGTCATAACAAAAGATTGCTGCACTTGAAGAGCATCTGGCTATATGC TGCCTTTTTCAGGGGTCATGCTAGCTATATGCTTCTTTAAACAAGAATGATTTACTCTCAATATATGGGCAGGAACTGCA TTTGCATGGAAATTCTATTGGAGATGAAGGAATCCGTTCTTTGATGACAGGATTATCTTCATATAAAGGTAAATTTGTAC TAGTGTCTGATATTGACTGTGCTGCTTATGCTTCAATAATTCCACTTTAATATATCTATGTAATTGACAAGCAATATTTG TTCTTAAGGGAAACTTACACTTCTAGACATTGGCAATAACTCAATAACCGCTGATGGTGCTTTCCATGTTGCGGGGTATA TTAGGAAGAGCAAAAGCCTGTTATGGTTGAACCTTTACATGAATGACATCGGTGATAAGGTATTGTATCTCACAGTCATT CGCTATTTCTCATACTTAGAGTTAGATTATCTTATATCTTGTGAAAATTGCATTACATAGTGTGAGGATCCCTAAGAATT TTAGTTGTTAACATGTGATATTATAGATTTATGATATTAGTTTTTTTTTCTTTCTATATCTGTCCAATATAACTTGACTT GTATATTGTAAAAAACTGCAATCGTACGACATGTAAACTAGTTGTGTCATGTGTGCATCTGCAACATGGAAATTGAAAAG TACATTAATGTCTATACTGAAACATCAACATGTGCACTATCTCACATCCTCTCATGCAACTTCAACTAGTGGCAGCAAAG GATGGATAGCTGGTGGTTGTTGGTCCATATGGCCACTCTTGAGAAAAATTATGATTTCCCTTTGTCTTCGCAGTAATAAC TACTATAACAAAATTAATAGACCTGTAAAGCTAGATTTCCAAGGGGACAATGTGATTTCTGATTATGTAAATTTTCAGGG AGCAGAAAAAATTGCGGATGCTTTGAAGGATAATCGGTCAATAACTACATTAGACCTGGTAAAACGAGCTCCTTTGAATT TATTACCAGTGTAGTGTGTCTTCTATGTCCTCTGCTCTGATCTTACCGAAAGAAAAAAAAAATGCAAGAGCAATACTATT TCTTGGGACATGACTTGGTTAAGTTAATGTTACAGGGAGGAAATAACATTCACGCTGCTGGAGTTAGTGTTATTGCTAGA GTTTTGAAAGATAATTCAGTTATTAGCACTGTAAGTCTCAACAATTACTTTGTTTCTTGTCTTTGCTTCTGTTCATTTTT TGCATTCTCTGACACTGGTTTTATTTCTCATTCTCAGTTGGAACTTAGTTATAATCCCATTGGACCAGATGGAGCCAAAG CCTTGGCTGAAGTTATCAAGTTTCATGGGAGCGTAAAGACCCTCAAGCTTGGTTGGTGCCAGGTAACCTTTTCACCATGT GTTAAACCTGTAAATTTTTTGTTATAACTTATATTTGTGACACAGAATTCCTGTACAGATAGGAGCAAAGGGAGCAGAGT TCATTGCGGATGCTTTAAAATACAATACTACAATTTCAATTCTGGACTTACGAGCAAATGGACTAAGAGATGAAGTTTGT TTTCAGCATCTTGAGACATTTTCCCCTTTCATCTTTGTTTTATCAACTATTGGACTTACGAGCAAATGGACTAACTTATA TTATTTTATGAATCAACTATTGCAGGGTGCACTGTGCCTGGCTCGCAGCTTGAAAGTGGTTAATGAAGCTTTAACCTCTT TAGATTTAGGATTTAATGAAATAAGGGTATGAACATGATTTTCAGTTTCGGCTTGCAAAGAAATTATATTATATTATCTC TAATCTCATCTTTATCTGATTCCCAGGATGATGGAGCTTTTGCTATTGCTCAAGCACTCAAGTCTAATGATGATATAGCT GTCACATCCCTAAACATATCCAGTAACTTCCTTACAAAATTTGGGCAGGTAGTGTGTATTTTCTGGATTTGCTTTGCTTT TTCTTATGCTTTTGCCCAGTTTTACCTCCCATTTTATTTAATTTTATTTTCACGGATCTGAATATACTTTTCACATGCAG AGTGCTTTATCCGATGCAAGAGACCATGTCCTCGAGATGACTGAAAAGGAAATCAACATTTTTCTCTAGAAGACACTATT CCTCGCGATAATGTGTTGTTACATACCAGGAGATCTTTTTGGTTATTTTGCATATTAGCTGCCGGCAAGTTCTGGTAAGG GCTCGTTCACATCAATTTTCTGTGTTCTAACCATTCATTGAGGAAAGTATAGATATTTGAATTGATATATTGTAGCCTTA AATTTATAGGTCTTTTTGAATGGTTTACAACCGTTGCATATTCTATTGATCTCTTTGATGATATAGTTGACCCACGAGTG TCAGTGTATGATTATTAGCTTCATTCCTCGTATAATTTTCAAAGATACTGGAAGGAGATGTTACATGCAGTTTGTCTTTC CTCGCTCTTTTTCTCCTGCTAGGATGCTGTTTAAACAAGTACAAGTTACATTGATTACTGGATAGTGCTGGTAGCGGTGG ATGTTTTTTCTTTGGGTTTTAGTTACTAAGTGATTTAAGTGTCTGTTTGTTTTTAAGTTGAAAATTCTAAATTCCCATGG CCCCAACATGGAAGAAGCTCAGCGCCTCTGTTGACATTCACTTGGGGTCAATTGTAAAACAAACATGCTTTAGCATTGTC AAGCAGAGTCCTGGCGGTGTTTGGTTGTCTTCAGCACATAGGTATGAAGCGTAATAGTACTAAGAACGATGAGCTCCCTC CATTTTTTTTTTTGAACTCGAGCTCCCTCCATTTTACTTGTTAGTATGTACGGTTTAGACAGTGAAAATAAATAAGTCAC ATAAGCTCATAAGTCTAATTTTGATTGGTTAAAATTAGTGCAGGGAAAGTGTGCATCCAACATTTTTCCAAAGTAGTATT TTCACCGAATAAATGAGAGGACAGTTGTCAAGAAATAAACTAAATCAATATACTATAAAATAATACAATAGGAAAACAAA TAAATAACAAAAAATATTTGAGGTAATATTCTTCAGAAGAGAGGAGAGAATTATTTTCTTTATTCATAAATATGCTTTCT ATGTTTTGTTGGGGCTAAAGGAGATGACTTAAACTACGTCTGATCATCACATTAAGCTAATGAGCAAACCACAAGTGAGT TGATACATCTTTTACAAAAAACCTTAAGACATTAGGTGTATGAGTTTTTTCACTTTTAAACTGCTCAAAGTTATCCTTAT CTTGACTTATTTACACTTGATACCTAACATGTTTTAATTTTGAGTAAAGTACACTCACCCCCCTCAAGTTTTGTTAGAAT AACACTCCACCCCATTCTTATCTAAAATCTACACCCCACCCCATTTTATATAGAGGCAAATTTAGTGACGAAAAATATTC TTCATTACTAATTAGTTATTATTTAAATTGTTAATCAATA 

CDS sequence (LotjaGi2g1v0314300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCCCTAACCTTCACTTCCACACTCTCTCTCTATCCTCACCGCCAAGCTCGCCTCCGGTACCGGCGGTTACAACCGTC GCCGCTATCTTCCGCAGAATTCGTCTGGCTTCCGTCTTTGAAGAGTCGGAGACCGCGTGTATTGAGAGCGCCATCAAGAT GCTTTGTAGTTAGGGCATCTGCCGGCATCGGAGGAGGTACTCACAGAGTGTATCGTCAGTCTCAGGCCACCGCGTCTCCG TCTATTGCCACCGTGAAACAGATTGCAAACACTGTTACTCCCTTTGGCATATTCTTCGCACTCACTTTTGTTATCTGGAA AGTAGTGGAGAAGCTTCTTGTTCCAGCTCCAAAGCAATCTAAATCTTCAACCGCGGAAAGTCAACCGGCTTCACAAGGAT TTAAATGGTCTGCTGGTACAAATCTGTTGTCGAGGCTCGGGGCGAAGATTGAGAGACAATCTAAACAGAAACTCAATGAG TTTGCTCGAGAATTGAGGTCATTTTCAAGTATTGATATGTCAGGGCGCAACTTTGGAGATGAAGGATTGTTCTTTCTTGC TGAGAGCTTGGCGTTCAACCAGACTGCAGAGGAAGTGAGTTTTGCTGCAAATGGAATAACAGCAGCTGGATTGAAAGCTT TTGATGGTGTTCTTCAATCGAACATGACATTGAAGATACTTGATCTTTCAGGAAACCCTGTTGGAGATGAAGGAGCCAAG AGCTTATGTGACATATTGGTAAATAACTCCAGCATTGAGAAGCTCCGGCTAAACAGTGCTGACTTGGGGGATGAGGGCGC GAAAGCTATTGCAGAAATGTTGAAGAAAAATTCAAGTTTGCGGGTTCTTGAACTTAACAACAACATGATTGAATATTCTG GATTTTCAAGTCTGGCTGGCGCACTTATTGAGAATAGCAGCATAAGAAATATACATCTCAATGGCAATTATGGTGGTGCA TTGGGGGCTAATGCATTGGCCAAAGCACTTGATGGCAACAAGTCTTTAAGGGAACTGCATTTGCATGGAAATTCTATTGG AGATGAAGGAATCCGTTCTTTGATGACAGGATTATCTTCATATAAAGGGAAACTTACACTTCTAGACATTGGCAATAACT CAATAACCGCTGATGGTGCTTTCCATGTTGCGGGGTATATTAGGAAGAGCAAAAGCCTGTTATGGTTGAACCTTTACATG AATGACATCGGTGATAAGGGAGCAGAAAAAATTGCGGATGCTTTGAAGGATAATCGGTCAATAACTACATTAGACCTGGG AGGAAATAACATTCACGCTGCTGGAGTTAGTGTTATTGCTAGAGTTTTGAAAGATAATTCAGTTATTAGCACTTTGGAAC TTAGTTATAATCCCATTGGACCAGATGGAGCCAAAGCCTTGGCTGAAGTTATCAAGTTTCATGGGAGCGTAAAGACCCTC AAGCTTGGTTGGTGCCAGATAGGAGCAAAGGGAGCAGAGTTCATTGCGGATGCTTTAAAATACAATACTACAATTTCAAT TCTGGACTTACGAGCAAATGGACTAAGAGATGAAGGTGCACTGTGCCTGGCTCGCAGCTTGAAAGTGGTTAATGAAGCTT TAACCTCTTTAGATTTAGGATTTAATGAAATAAGGGATGATGGAGCTTTTGCTATTGCTCAAGCACTCAAGTCTAATGAT GATATAGCTGTCACATCCCTAAACATATCCAGTAACTTCCTTACAAAATTTGGGCAGAGTGCTTTATCCGATGCAAGAGA CCATGTCCTCGAGATGACTGAAAAGGAAATCAACATTTTTCTCTAG 

Protein sequence (LotjaGi2g1v0314300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSLTFTSTLSLYPHRQARLRYRRLQPSPLSSAEFVWLPSLKSRRPRVLRAPSRCFVVRASAGIGGGTHRVYRQSQATASP SIATVKQIANTVTPFGIFFALTFVIWKVVEKLLVPAPKQSKSSTAESQPASQGFKWSAGTNLLSRLGAKIERQSKQKLNE FARELRSFSSIDMSGRNFGDEGLFFLAESLAFNQTAEEVSFAANGITAAGLKAFDGVLQSNMTLKILDLSGNPVGDEGAK SLCDILVNNSSIEKLRLNSADLGDEGAKAIAEMLKKNSSLRVLELNNNMIEYSGFSSLAGALIENSSIRNIHLNGNYGGA LGANALAKALDGNKSLRELHLHGNSIGDEGIRSLMTGLSSYKGKLTLLDIGNNSITADGAFHVAGYIRKSKSLLWLNLYM NDIGDKGAEKIADALKDNRSITTLDLGGNNIHAAGVSVIARVLKDNSVISTLELSYNPIGPDGAKALAEVIKFHGSVKTL KLGWCQIGAKGAEFIADALKYNTTISILDLRANGLRDEGALCLARSLKVVNEALTSLDLGFNEIRDDGAFAIAQALKSND DIAVTSLNISSNFLTKFGQSALSDARDHVLEMTEKEINIFL 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 56 585 530 9.4E-104
PANTHER 56 585 530 9.4E-104
Gene3D 143 289 147 1.6E-31
SUPERFAMILY 149 360 212 2.51E-45
SMART 165 192 28 140.0
Pfam 220 243 24 3.1E-7
SMART 221 248 28 9.6E-5
Pfam 248 271 24 0.0015
SMART 249 276 28 7.7E-5
SMART 277 304 28 1.6
Gene3D 290 469 180 8.3E-46
SMART 305 332 28 2.7
SUPERFAMILY 321 589 269 3.45E-66
SMART 333 360 28 1.1E-5
Pfam 333 355 23 0.0012
SMART 362 389 28 28.0
SMART 390 417 28 2.3E-4
Pfam 393 412 20 0.06
SMART 418 445 28 2.7E-4
Pfam 418 440 23 0.0017
Pfam 446 468 23 0.002
SMART 446 473 28 4.5E-4
Gene3D 470 598 129 6.8E-28
SMART 474 501 28 4.6
Pfam 477 496 20 0.052
Pfam 501 524 24 0.0098
SMART 502 529 28 0.35
SMART 531 558 28 0.03
Pfam 534 553 20 2.7E-4

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0314300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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